{"id":"https://openalex.org/W3084726067","doi":"https://doi.org/10.1186/s12859-020-03680-6","title":"Spark-based parallel calculation of 3D fourier shell correlation for macromolecule structure local resolution estimation","display_name":"Spark-based parallel calculation of 3D fourier shell correlation for macromolecule structure local resolution estimation","publication_year":2020,"publication_date":"2020-09-01","ids":{"openalex":"https://openalex.org/W3084726067","doi":"https://doi.org/10.1186/s12859-020-03680-6","mag":"3084726067","pmid":"https://pubmed.ncbi.nlm.nih.gov/32938398"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03680-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03680-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03680-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03680-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083435019","display_name":"Yongchun L\u00fc","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yongchun L\u00fc","raw_affiliation_strings":["Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China. lvyongchun@ncic.ac.cn","University of Chinese Academy of Sciences, Beijing, China. lvyongchun@ncic.ac.cn","Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China. lvyongchun@ncic.ac.cn","institution_ids":["https://openalex.org/I4210090176"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, China. lvyongchun@ncic.ac.cn","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086172600","display_name":"Xiangrui Zeng","orcid":"https://orcid.org/0000-0002-8589-4474"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiangrui Zeng","raw_affiliation_strings":["Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102811848","display_name":"Xinhui Tian","orcid":"https://orcid.org/0000-0003-3687-7923"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinhui Tian","raw_affiliation_strings":["Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xiao Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Shi","raw_affiliation_strings":["Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044908439","display_name":"Hui Wang","orcid":"https://orcid.org/0000-0002-9922-7170"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Wang","raw_affiliation_strings":["Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101498509","display_name":"Xiaohui Zheng","orcid":"https://orcid.org/0000-0002-1307-1209"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaohui Zheng","raw_affiliation_strings":["Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China","University of Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100374781","display_name":"Xiaodong Liu","orcid":"https://orcid.org/0000-0002-3733-451X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaodong Liu","raw_affiliation_strings":["Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109472257","display_name":"Xiaofang Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofang Zhao","raw_affiliation_strings":["Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China","University of Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology of the Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xin Gao","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000807861","display_name":"Min Xu","orcid":"https://orcid.org/0000-0002-0881-5891"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Min Xu","raw_affiliation_strings":["Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, USA. mxu1@cs.cmu.edu","Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, USA. mxu1@cs.cmu.edu","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, USA","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5083435019"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176","https://openalex.org/I4210165038"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.9648,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.81475498,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"21","issue":"S13","first_page":"391","last_page":"391"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6890745162963867},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6109575033187866},{"id":"https://openalex.org/keywords/spark","display_name":"SPARK (programming language)","score":0.5304410457611084},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.47812238335609436},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4444272518157959},{"id":"https://openalex.org/keywords/computer-cluster","display_name":"Computer cluster","score":0.4364977180957794},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3709363341331482},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34157973527908325},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11613237857818604},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.08696883916854858}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6890745162963867},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6109575033187866},{"id":"https://openalex.org/C2781215313","wikidata":"https://www.wikidata.org/wiki/Q3493345","display_name":"SPARK (programming language)","level":2,"score":0.5304410457611084},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.47812238335609436},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4444272518157959},{"id":"https://openalex.org/C29140674","wikidata":"https://www.wikidata.org/wiki/Q206637","display_name":"Computer cluster","level":2,"score":0.4364977180957794},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3709363341331482},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34157973527908325},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11613237857818604},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.08696883916854858},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-020-03680-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03680-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03680-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32938398","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32938398","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:40ec31910d3842618ff41006438e9502","is_oa":true,"landing_page_url":"https://doaj.org/article/40ec31910d3842618ff41006438e9502","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S13, Pp 1-18 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7495889","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7495889","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/665343","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/665343","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03680-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03680-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03680-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1120352242","display_name":null,"funder_award_id":"URF/1/3007-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G3005901608","display_name":null,"funder_award_id":"P41 GM103712","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5188192957","display_name":null,"funder_award_id":"P41 GM103712","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5202937784","display_name":null,"funder_award_id":"61379082","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5207768667","display_name":null,"funder_award_id":"P41 GM103712","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5353306443","display_name":null,"funder_award_id":"URF/1/2602-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G5963489573","display_name":"\u4e91\u6570\u636e\u4e2d\u5fc3\u7f51\u7edc\u7684QoS\u4fdd\u969c\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61672499","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6380147298","display_name":null,"funder_award_id":"GM103712","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6827548176","display_name":null,"funder_award_id":"DBI-1949629","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G688837404","display_name":"IIBR Informatics: Reducing the training data annotation cost for learning-based macromolecule identification in cellular electron cryo-tomography","funder_award_id":"1949629","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310207","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337968","display_name":"Center for Machine Learning and Health, School of Computer Science, Carnegie Mellon University","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3084726067.pdf","grobid_xml":"https://content.openalex.org/works/W3084726067.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W36187607","https://openalex.org/W1819533518","https://openalex.org/W1989585427","https://openalex.org/W1990954873","https://openalex.org/W2034484189","https://openalex.org/W2042455841","https://openalex.org/W2061883458","https://openalex.org/W2075824676","https://openalex.org/W2086812659","https://openalex.org/W2089672648","https://openalex.org/W2094614903","https://openalex.org/W2115251427","https://openalex.org/W2117858075","https://openalex.org/W2126715624","https://openalex.org/W2132629607","https://openalex.org/W2160341948","https://openalex.org/W2173213060","https://openalex.org/W2189465200","https://openalex.org/W2315072896","https://openalex.org/W2532173746","https://openalex.org/W2558525431","https://openalex.org/W2753944516","https://openalex.org/W2761885575","https://openalex.org/W2786623728","https://openalex.org/W2809394400","https://openalex.org/W2894689411","https://openalex.org/W2931162162","https://openalex.org/W2970925136","https://openalex.org/W2972528761","https://openalex.org/W4242589337","https://openalex.org/W6752635217"],"related_works":["https://openalex.org/W4308507533","https://openalex.org/W2407107767","https://openalex.org/W2901787049","https://openalex.org/W2792181990","https://openalex.org/W4246264554","https://openalex.org/W2962431048","https://openalex.org/W3112375919","https://openalex.org/W4233648438","https://openalex.org/W2793083950","https://openalex.org/W2969378954"],"abstract_inverted_index":{"BACKGROUND:":[0],"Resolution":[1],"estimation":[2],"is":[3,111,163,315],"the":[4,9,16,30,57,60,80,115,160,182,207,233,238,241,288,306,309,318],"main":[5],"evaluation":[6,100,118,215],"criteria":[7],"for":[8,33,165,274,317],"reconstruction":[10,84],"of":[11,18,59,74,83,85,209,308,321],"macromolecular":[12,35,326],"3D":[13,31,140,153,166,192,212,221,263,272,277,282,310],"structure":[14,61],"in":[15,42,48,69,147,172,202,228,267],"field":[17],"cryoelectron":[19],"microscopy":[20],"(cryo-EM).":[21],"At":[22],"present,":[23],"there":[24],"are":[25,67,94,102,120,196],"many":[26],"methods":[27,93,101,119],"to":[28,78,155,269],"evaluate":[29],"resolution":[32,58,92,99,117,214,279,284,312],"reconstructed":[34,292,325],"structures":[36],"from":[37,293],"Single":[38],"Particle":[39],"Analysis":[40],"(SPA)":[41],"cryo-EM":[43],"and":[44,87,169,245,250,297],"subtomogram":[45,298],"averaging":[46],"(SA)":[47],"electron":[49],"cryotomography":[50],"(cryo-ET).":[51],"As":[52],"global":[53],"methods,":[54],"they":[55,66],"measure":[56],"as":[62],"a":[63,89,126,137,203,225,258,276],"whole,":[64],"but":[65],"inaccurate":[68],"detecting":[70],"subtle":[71,81,322],"local":[72,91,98,105,193,213,278,283,311],"changes":[73,82],"reconstruction.":[75],"In":[76,186,253],"order":[77],"detect":[79],"SPA":[86],"SA,":[88],"few":[90],"proposed.":[95],"The":[96],"mainstream":[97,234],"based":[103,121,217,261],"on":[104,122,125,218],"Fourier":[106],"shell":[107],"correlation":[108],"(FSC),":[109],"which":[110,314],"computationally":[112],"intensive.":[113],"However,":[114],"existing":[116],"multi-threading":[123],"implementation":[124],"single":[127,294],"computer":[128,204],"with":[129,232],"very":[130],"poor":[131],"scalability.":[132,251],"RESULTS:":[133],"This":[134],"paper":[135],"proposes":[136],"new":[138],"fine-grained":[139,220,262],"array":[141,167,222,264],"partition":[142,223,265],"method":[143,150,266,302],"by":[144],"key-value":[145,156],"format":[146,260],"Spark.":[148],"Our":[149,300],"first":[151],"converts":[152],"images":[154],"data":[157,162,170],"(K-V).":[158],"Then":[159],"K-V":[161,259],"used":[164],"partitioning":[168],"exchange":[171],"parallel.":[173],"So":[174],"Spark-based":[175],"distributed":[176,188],"parallel":[177,270],"computing":[178,189,229],"framework":[179],"can":[180,303],"solve":[181],"above":[183],"scalability":[184],"problem.":[185],"this":[187,254],"framework,":[190],"all":[191],"FSC":[194,235,273],"tasks":[195],"simultaneously":[197],"calculated":[198],"across":[199],"multiple":[200],"nodes":[201],"cluster.":[205],"Through":[206],"calculation":[208],"experimental":[210],"data,":[211],"algorithm":[216,236],"Spark":[219,268],"has":[224,246],"magnitude":[226],"change":[227],"speed":[230,307],"compared":[231],"under":[237],"condition":[239],"that":[240],"accuracy":[242],"remains":[243],"unchanged,":[244],"better":[247],"fault":[248],"tolerance":[249],"CONCLUSIONS:":[252],"paper,":[255],"we":[256],"proposed":[257,301],"calculating":[271],"getting":[275],"density":[280,285,290],"map.":[281],"map":[286],"evaluates":[287],"three-dimensional":[289],"maps":[291],"particle":[295],"analysis":[296],"averaging.":[299],"significantly":[304],"increase":[305],"evaluation,":[313],"important":[316],"efficient":[319],"detection":[320],"variations":[323],"among":[324],"structures.":[327]},"counts_by_year":[{"year":2021,"cited_by_count":8}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
