{"id":"https://openalex.org/W3046109898","doi":"https://doi.org/10.1186/s12859-020-03667-3","title":"Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets","display_name":"Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets","publication_year":2020,"publication_date":"2020-07-28","ids":{"openalex":"https://openalex.org/W3046109898","doi":"https://doi.org/10.1186/s12859-020-03667-3","mag":"3046109898","pmid":"https://pubmed.ncbi.nlm.nih.gov/32723290"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03667-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03667-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03667-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03667-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101526924","display_name":"Yi Yue","orcid":"https://orcid.org/0000-0002-6520-7171"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yi Yue","raw_affiliation_strings":["Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China. yyyue@ahau.edu.cn","School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China. yyyue@ahau.edu.cn","School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. yyyue@ahau.edu.cn","Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":"https://orcid.org/0000-0002-6520-7171","affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China. yyyue@ahau.edu.cn","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China. yyyue@ahau.edu.cn","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. yyyue@ahau.edu.cn","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033189118","display_name":"Hao Huang","orcid":"https://orcid.org/0000-0001-6803-3210"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Huang","raw_affiliation_strings":["Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China","School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":"https://orcid.org/0000-0001-6803-3210","affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052565646","display_name":"Qi Zhao","orcid":"https://orcid.org/0000-0001-9713-1864"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhao Qi","raw_affiliation_strings":["Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080126877","display_name":"Huimin Dou","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui-Min Dou","raw_affiliation_strings":["School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100395666","display_name":"Xinyi Liu","orcid":"https://orcid.org/0000-0003-0241-5499"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin-Yi Liu","raw_affiliation_strings":["School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052734317","display_name":"Tian-Fei Han","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tian-Fei Han","raw_affiliation_strings":["Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100454804","display_name":"Yue Chen","orcid":"https://orcid.org/0000-0001-9649-5236"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Chen","raw_affiliation_strings":["Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056756214","display_name":"Xiangjun Song","orcid":"https://orcid.org/0000-0002-8044-9961"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiang-Jun Song","raw_affiliation_strings":["Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110908058","display_name":"Youhua Zhang","orcid":"https://orcid.org/0009-0006-5744-7374"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"You-Hua Zhang","raw_affiliation_strings":["Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China. zhangyh@ahau.edu.cn","School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China. zhangyh@ahau.edu.cn","School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. zhangyh@ahau.edu.cn","School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China. zhangyh@ahau.edu.cn","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China. zhangyh@ahau.edu.cn","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. zhangyh@ahau.edu.cn","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103861684","display_name":"Jian Tu","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Tu","raw_affiliation_strings":["Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China. tujian1980@126.com","School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China. tujian1980@126.com","School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China. tujian1980@126.com","School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, Anhui Agricultural University, Hefei, 230036, China. tujian1980@126.com","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, China. tujian1980@126.com","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China. tujian1980@126.com","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information & Computer, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5101526924"],"corresponding_institution_ids":["https://openalex.org/I140221134"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.1235,"has_fulltext":true,"cited_by_count":110,"citation_normalized_percentile":{"value":0.96659588,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"21","issue":"1","first_page":"334","last_page":"334"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6154000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6154000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.2687999904155731,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.019300000742077827,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8953591585159302},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8334805965423584},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5589536428451538},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5551700592041016},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.46410712599754333},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4494110345840454},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.44939500093460083},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4467596411705017},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4035152196884155},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32999029755592346},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22684502601623535},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16274327039718628}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8953591585159302},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8334805965423584},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5589536428451538},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5551700592041016},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.46410712599754333},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4494110345840454},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.44939500093460083},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4467596411705017},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4035152196884155},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32999029755592346},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22684502601623535},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16274327039718628},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069558","descriptor_name":"Unsupervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069558","descriptor_name":"Unsupervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069558","descriptor_name":"Unsupervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-020-03667-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03667-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03667-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32723290","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32723290","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:396d684e14414c3c8cdae6b63737f6bd","is_oa":true,"landing_page_url":"https://doaj.org/article/396d684e14414c3c8cdae6b63737f6bd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-15 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7469296","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7469296","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03667-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03667-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03667-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5178282263","display_name":null,"funder_award_id":"31772707","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5725465289","display_name":null,"funder_award_id":"31972642","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6256444366","display_name":null,"funder_award_id":"COVID-19","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1528357204","https://openalex.org/W1539550196","https://openalex.org/W1878521557","https://openalex.org/W1979006961","https://openalex.org/W2043457856","https://openalex.org/W2055043387","https://openalex.org/W2070826422","https://openalex.org/W2103441770","https://openalex.org/W2103901746","https://openalex.org/W2108718991","https://openalex.org/W2110300022","https://openalex.org/W2112364185","https://openalex.org/W2124351063","https://openalex.org/W2124985265","https://openalex.org/W2127415562","https://openalex.org/W2131988453","https://openalex.org/W2134375163","https://openalex.org/W2134751812","https://openalex.org/W2139360719","https://openalex.org/W2140211206","https://openalex.org/W2141202455","https://openalex.org/W2155628349","https://openalex.org/W2163166295","https://openalex.org/W2294353708","https://openalex.org/W2337508844","https://openalex.org/W2341329218","https://openalex.org/W2341364667","https://openalex.org/W2401404581","https://openalex.org/W2559838906","https://openalex.org/W2587321626","https://openalex.org/W2599417231","https://openalex.org/W2743255823","https://openalex.org/W2754579667","https://openalex.org/W2766358903","https://openalex.org/W2771008898","https://openalex.org/W2773939681","https://openalex.org/W2775152143","https://openalex.org/W2778318416","https://openalex.org/W2789843538","https://openalex.org/W2810538097","https://openalex.org/W2902769857","https://openalex.org/W2904625720","https://openalex.org/W2932165618","https://openalex.org/W2938828179","https://openalex.org/W2938868597","https://openalex.org/W2944548763","https://openalex.org/W2949629831","https://openalex.org/W2950464960","https://openalex.org/W2950489962","https://openalex.org/W2950513687","https://openalex.org/W2950785362","https://openalex.org/W2951676949","https://openalex.org/W2951912016","https://openalex.org/W2963276645","https://openalex.org/W2968450569","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2055448750","https://openalex.org/W3134563641","https://openalex.org/W1986608492","https://openalex.org/W4210830088","https://openalex.org/W3165667290","https://openalex.org/W2028002954","https://openalex.org/W54719527","https://openalex.org/W4283384467","https://openalex.org/W2327661880","https://openalex.org/W2154701173"],"abstract_inverted_index":{"BACKGROUND:":[0],"Shotgun":[1],"metagenomics":[2,259],"based":[3],"on":[4,130],"untargeted":[5],"sequencing":[6],"can":[7],"explore":[8],"the":[9,13,22,38,77,125,136,163,169,179,191,218,283],"taxonomic":[10],"profile":[11],"and":[12,20,41,50,118,135,152,160,189,210,263,282],"function":[14],"of":[15,24,79,87,98,127,166,255,276,285],"unknown":[16],"microorganisms":[17],"in":[18,45,58],"samples,":[19],"complement":[21],"shortage":[23],"amplicon":[25],"sequencing.":[26],"Binning":[27],"assembled":[28],"sequences":[29],"into":[30,68],"individual":[31,69],"groups,":[32],"which":[33],"represent":[34],"microbial":[35],"genomes,":[36],"is":[37,97,240],"key":[39],"step":[40],"a":[42,85,241,253,265],"major":[43],"challenge":[44,139,243],"metagenomic":[46,133,145,271],"research.":[47,103],"Both":[48],"supervised":[49],"unsupervised":[51,64],"machine":[52,73],"learning":[53,74],"methods":[54,75],"have":[55,91],"been":[56],"employed":[57],"binning.":[59],"Genome":[60,213],"binning":[61,89,111,116,121,164,261,272,294],"belonging":[62],"to":[63,101],"method":[65],"clusters":[66],"contigs":[67],"genome":[70,88,95,110,148,172,194,198,221,228,246],"bins":[71,195,222],"by":[72,123,273],"without":[76],"assistance":[78],"any":[80],"reference":[81],"databases.":[82],"So":[83],"far":[84],"lot":[86],"tools":[90,96,112,117,122,129,262,269],"emerged.":[92],"Evaluating":[93],"these":[94,128],"great":[99],"significance":[100],"microbiological":[102],"In":[104,249],"this":[105],"study,":[106],"we":[107,251],"evaluate":[108],"15":[109],"containing":[113],"12":[114],"original":[115,147,158,197],"3":[119],"refining":[120,214],"comparing":[124,274],"performance":[126,206],"chicken":[131,143],"gut":[132,144],"datasets":[134],"first":[137],"CAMI":[138,175],"datasets.":[140],"RESULTS:":[141],"For":[142,174],"datasets,":[146,176],"binner":[149,229],"MetaBat,":[150],"Groopm2":[151,177],"Autometa":[153],"performed":[154,230],"better":[155],"than":[156],"other":[157],"binner,":[159],"MetaWrap":[161],"combined":[162],"results":[165],"them":[167],"generated":[168],"most":[170,192,219],"high-quality":[171,193,220,286],"bins.":[173,288],"achieved":[178],"highest":[180],"purity":[181],"(>":[182,187],"0.9)":[183],"with":[184,201,207],"good":[185],"completeness":[186,209],"0.8),":[188],"reconstructed":[190,287],"among":[196,223],"binners.":[199,226],"Compared":[200],"Groopm2,":[202],"MetaBat2":[203],"had":[204],"similar":[205],"higher":[208],"lower":[211],"purity.":[212],"binners":[215],"DASTool":[216],"predicated":[217],"all":[224,245],"genomes":[225],"Most":[227],"well":[231],"for":[232,244,267,270,292],"unique":[233],"strains.":[234],"Nonetheless,":[235],"reconstructing":[236],"common":[237],"strains":[238],"still":[239],"substantial":[242],"binner.":[247],"CONCLUSIONS:":[248],"conclusion,":[250],"tested":[252],"set":[254],"currently":[256],"available,":[257],"state-of-the-art":[258],"hybrid":[260],"provided":[264],"guide":[266],"selecting":[268],"range":[275],"purity,":[277],"completeness,":[278],"adjusted":[279],"rand":[280],"index,":[281],"number":[284],"Furthermore,":[289],"available":[290],"information":[291],"future":[293],"strategy":[295],"were":[296],"concluded.":[297]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":29},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-03T08:13:44.112507","created_date":"2025-10-10T00:00:00"}
