{"id":"https://openalex.org/W3087622999","doi":"https://doi.org/10.1186/s12859-020-03648-6","title":"A computational framework for modeling and studying pertussis epidemiology and vaccination","display_name":"A computational framework for modeling and studying pertussis epidemiology and vaccination","publication_year":2020,"publication_date":"2020-09-01","ids":{"openalex":"https://openalex.org/W3087622999","doi":"https://doi.org/10.1186/s12859-020-03648-6","mag":"3087622999","pmid":"https://pubmed.ncbi.nlm.nih.gov/32938370"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03648-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03648-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03648-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03648-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064102252","display_name":"Paolo Castagno","orcid":"https://orcid.org/0000-0002-1349-1844"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Castagno","raw_affiliation_strings":["Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082219669","display_name":"Simone Pernice","orcid":"https://orcid.org/0000-0001-7124-4676"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simone Pernice","raw_affiliation_strings":["Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031162466","display_name":"Gianni Ghetti","orcid":"https://orcid.org/0000-0001-6809-5251"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gianni Ghetti","raw_affiliation_strings":["AdRes s.r.l, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AdRes s.r.l, Turin, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017189389","display_name":"Massimiliano Povero","orcid":"https://orcid.org/0000-0003-0666-066X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Massimiliano Povero","raw_affiliation_strings":["AdRes s.r.l, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AdRes s.r.l, Turin, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057388317","display_name":"Lorenzo Pradelli","orcid":"https://orcid.org/0000-0002-7648-8917"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lorenzo Pradelli","raw_affiliation_strings":["AdRes s.r.l, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AdRes s.r.l, Turin, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020744129","display_name":"Daniela Paolotti","orcid":"https://orcid.org/0000-0003-1356-3470"},"institutions":[{"id":"https://openalex.org/I134940468","display_name":"Institute for Scientific Interchange","ror":"https://ror.org/00te2x188","country_code":"IT","type":"facility","lineage":["https://openalex.org/I134940468"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniela Paolotti","raw_affiliation_strings":["Data Science for Social Impact and Sustainability, ISI Foundation, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Science for Social Impact and Sustainability, ISI Foundation, Turin, Italy","institution_ids":["https://openalex.org/I134940468"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056160729","display_name":"Gianfranco Balbo","orcid":"https://orcid.org/0000-0001-8719-9267"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianfranco Balbo","raw_affiliation_strings":["Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057340594","display_name":"Matteo Sereno","orcid":"https://orcid.org/0000-0002-5339-3456"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Matteo Sereno","raw_affiliation_strings":["Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002392135","display_name":"Marco Beccuti","orcid":"https://orcid.org/0000-0001-6125-9460"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Marco Beccuti","raw_affiliation_strings":["Department of Computer Science, University of Turin, Turin, Italy. beccuti@di.unito.it","Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":"https://orcid.org/0000-0001-6125-9460","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy. beccuti@di.unito.it","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002392135"],"corresponding_institution_ids":["https://openalex.org/I55143463"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.4429,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.69889834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"21","issue":"S8","first_page":"344","last_page":"344"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.34470000863075256,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.34470000863075256,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.1428000032901764,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.07810000330209732,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6916651725769043},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6108556985855103},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5326829552650452},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.4790288507938385},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.43801623582839966},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.35110703110694885},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.34373533725738525},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.20331025123596191},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1827336549758911}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6916651725769043},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6108556985855103},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5326829552650452},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.4790288507938385},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.43801623582839966},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.35110703110694885},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.34373533725738525},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.20331025123596191},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1827336549758911},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000293","descriptor_name":"Adolescent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000293","descriptor_name":"Adolescent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000293","descriptor_name":"Adolescent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014611","descriptor_name":"Vaccination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014611","descriptor_name":"Vaccination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014611","descriptor_name":"Vaccination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014917","descriptor_name":"Whooping Cough","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D014917","descriptor_name":"Whooping Cough","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D014917","descriptor_name":"Whooping Cough","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-020-03648-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03648-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03648-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32938370","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32938370","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:507104d11ad241ad8d1708e0ccb7a53c","is_oa":true,"landing_page_url":"https://doaj.org/article/507104d11ad241ad8d1708e0ccb7a53c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S8, Pp 1-32 (2020)","raw_type":"article"},{"id":"pmh:oai:iris.unito.it:2318/1759507","is_oa":true,"landing_page_url":"http://hdl.handle.net/2318/1759507","pdf_url":null,"source":{"id":"https://openalex.org/S4306400637","display_name":"Institutional Research Information System University of Turin (University of Turin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I55143463","host_organization_name":"University of Turin","host_organization_lineage":["https://openalex.org/I55143463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7492136","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7492136","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03648-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03648-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03648-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309723","display_name":"Fondazione CRT","ror":"https://ror.org/00fgmmg43"},{"id":"https://openalex.org/F4320315254","display_name":"Innovative Research Group Project of the National Natural Science Foundation of China","ror":null},{"id":"https://openalex.org/F4320324041","display_name":"Universit\u00e0 degli Studi di Torino","ror":"https://ror.org/048tbm396"},{"id":"https://openalex.org/F4320326081","display_name":"Regione Piemonte","ror":null},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3087622999.pdf","grobid_xml":"https://content.openalex.org/works/W3087622999.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1547663768","https://openalex.org/W1587026990","https://openalex.org/W1986755980","https://openalex.org/W2009036753","https://openalex.org/W2009676431","https://openalex.org/W2061595296","https://openalex.org/W2062259223","https://openalex.org/W2066405110","https://openalex.org/W2073017712","https://openalex.org/W2073758936","https://openalex.org/W2073997553","https://openalex.org/W2074401358","https://openalex.org/W2084924279","https://openalex.org/W2093453284","https://openalex.org/W2093901235","https://openalex.org/W2126393394","https://openalex.org/W2143400799","https://openalex.org/W2146432221","https://openalex.org/W2152803686","https://openalex.org/W2155418451","https://openalex.org/W2158985300","https://openalex.org/W2159301256","https://openalex.org/W2161728228","https://openalex.org/W2162236030","https://openalex.org/W2166022262","https://openalex.org/W2289304442","https://openalex.org/W2315528624","https://openalex.org/W2470063481","https://openalex.org/W2593505765","https://openalex.org/W2604622795","https://openalex.org/W2781853897","https://openalex.org/W2786029688","https://openalex.org/W2792069497","https://openalex.org/W2794639105","https://openalex.org/W2963343736","https://openalex.org/W2963503659","https://openalex.org/W2990683873","https://openalex.org/W2996373685","https://openalex.org/W4248081355","https://openalex.org/W4254687493","https://openalex.org/W4302331569","https://openalex.org/W6903697242"],"related_works":["https://openalex.org/W107105315","https://openalex.org/W1584537303","https://openalex.org/W1872724644","https://openalex.org/W2750549761","https://openalex.org/W4388155270","https://openalex.org/W28826848","https://openalex.org/W2122272819","https://openalex.org/W4367156293","https://openalex.org/W3207760230","https://openalex.org/W1496222301"],"abstract_inverted_index":{"BACKGROUND:":[0],"Emerging":[1],"and":[2,11,33,56,65,90,122,142,184,202,262,278,299],"re-emerging":[3],"infectious":[4,79],"diseases":[5,55,89],"such":[6],"as":[7],"Zika,":[8],"SARS,":[9],"ncovid19":[10],"Pertussis,":[12],"pose":[13],"a":[14,94,111,131,149,166,179,199,227,243,267],"compelling":[15],"challenge":[16],"for":[17,87,248],"epidemiologists":[18,44],"due":[19,97],"to":[20,47,57,69,98,107,136,152,169,205,208,265],"their":[21,91,211],"significant":[22],"impact":[23],"on":[24,59],"global":[25],"public":[26],"health.":[27],"In":[28,126],"this":[29,127,222],"context,":[30],"computational":[31,279],"models":[32,86],"computer":[34],"simulations":[35],"are":[36],"one":[37],"of":[38,53,77,84,110,148,161,182,190,221,229,251,304],"the":[39,50,75,78,82,99,108,146,154,159,171,176,188,196,216,219,235,249,282,287,302],"available":[40],"research":[41],"tools":[42],"that":[43,101],"can":[45],"exploit":[46],"better":[48],"understand":[49],"spreading":[51],"characteristics":[52],"these":[54,88],"decide":[58],"vaccination":[60],"policies,":[61],"human":[62],"interaction":[63],"controls,":[64],"other":[66],"social":[67],"measures":[68],"counter,":[70],"mitigate":[71],"or":[72],"simply":[73],"delay":[74],"spread":[76],"diseases.":[80],"Nevertheless,":[81],"construction":[83],"mathematical":[85,123,277],"solutions":[92],"remain":[93],"challenging":[95],"tasks":[96],"fact":[100],"little":[102],"effort":[103],"has":[104],"been":[105],"devoted":[106],"definition":[109],"general":[112,133,245],"framework":[113,135,223,247,283],"easily":[114,209,269],"accessible":[115,270],"even":[116,274],"by":[117,187,271,290],"researchers":[118],"without":[119,275],"advanced":[120,276],"modelling":[121],"skills.":[124,280],"RESULTS:":[125],"paper":[128],"we":[129,233],"describe":[130],"new":[132,244,305],"modeling":[134,246],"study":[137,230],"epidemiological":[138,252],"systems,":[139,253],"whose":[140],"novelties":[141],"strengths":[143],"are:":[144],"(1)":[145],"use":[147],"graphical":[150,258],"formalism":[151],"simplify":[153],"model":[155],"creation":[156],"phase;":[157],"(2)":[158],"implementation":[160],"an":[162],"R":[163,260],"package":[164],"providing":[165],"friendly":[167],"interface":[168],"access":[170],"analysis":[172,192,213,250,298],"techniques":[173,193],"implemented":[174,194,285],"in":[175,195,215,231,238],"framework;":[177,197],"(3)":[178],"high":[180],"level":[181],"portability":[183],"reproducibility":[185],"granted":[186],"containerization":[189,264],"all":[191],"(4)":[198],"well-defined":[200],"schema":[201],"related":[203],"infrastructure":[204],"allow":[206],"users":[207],"integrate":[210],"own":[212],"workflow":[214],"framework.":[217],"Then,":[218],"effectiveness":[220],"is":[224],"showed":[225],"through":[226],"case":[228],"which":[232,254],"investigate":[234],"pertussis":[236],"epidemiology":[237],"Italy.":[239],"CONCLUSIONS:":[240],"We":[241],"propose":[242],"exploits":[255],"Petri":[256],"Net":[257],"formalism,":[259],"environment,":[261],"Docker":[263],"derive":[266],"tool":[268],"any":[272],"researcher":[273],"Moreover,":[281],"was":[284],"following":[286],"guidelines":[288],"defined":[289],"Reproducible":[291],"Bioinformatics":[292],"Project":[293],"so":[294],"it":[295],"guarantees":[296],"reproducible":[297],"makes":[300],"simple":[301],"developed":[303],"user-defined":[306],"workflows.":[307]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
