{"id":"https://openalex.org/W3087201089","doi":"https://doi.org/10.1186/s12859-020-03600-8","title":"The CASP13-CAPRI targets as case studies to illustrate a novel scoring pipeline integrating CONSRANK with clustering and interface analyses","display_name":"The CASP13-CAPRI targets as case studies to illustrate a novel scoring pipeline integrating CONSRANK with clustering and interface analyses","publication_year":2020,"publication_date":"2020-09-01","ids":{"openalex":"https://openalex.org/W3087201089","doi":"https://doi.org/10.1186/s12859-020-03600-8","mag":"3087201089","pmid":"https://pubmed.ncbi.nlm.nih.gov/32938371"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03600-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03600-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03600-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03600-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023132821","display_name":"Didier Barradas\u2010Bautista","orcid":"https://orcid.org/0000-0002-6464-6607"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Didier Barradas-Bautista","raw_affiliation_strings":["KAUST Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KAUST Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007213740","display_name":"Zhen Cao","orcid":"https://orcid.org/0000-0002-9341-3634"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Zhen Cao","raw_affiliation_strings":["KAUST Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KAUST Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053222658","display_name":"Luigi Cavallo","orcid":"https://orcid.org/0000-0002-1398-338X"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Luigi Cavallo","raw_affiliation_strings":["KAUST Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KAUST Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071471999","display_name":"Romina Oliva","orcid":"https://orcid.org/0000-0002-6156-6249"},"institutions":[{"id":"https://openalex.org/I183638586","display_name":"Parthenope University of Naples","ror":"https://ror.org/05pcv4v03","country_code":"IT","type":"education","lineage":["https://openalex.org/I183638586"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Romina Oliva","raw_affiliation_strings":["Department of Sciences and Technologies, University of Naples \"Parthenope\", Centro Direzionale - Isola C4, 80143, Naples, Italy. romina.oliva@uniparthenope.it","Department of Sciences and Technologies, University of Naples \"Parthenope\", Centro Direzionale - Isola C4, 80143, Naples, Italy"],"raw_orcid":"https://orcid.org/0000-0002-6156-6249","affiliations":[{"raw_affiliation_string":"Department of Sciences and Technologies, University of Naples \"Parthenope\", Centro Direzionale - Isola C4, 80143, Naples, Italy. romina.oliva@uniparthenope.it","institution_ids":["https://openalex.org/I183638586"]},{"raw_affiliation_string":"Department of Sciences and Technologies, University of Naples \"Parthenope\", Centro Direzionale - Isola C4, 80143, Naples, Italy","institution_ids":["https://openalex.org/I183638586"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5071471999"],"corresponding_institution_ids":["https://openalex.org/I183638586"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.5219,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.61513499,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"21","issue":"S8","first_page":"262","last_page":"262"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.35839998722076416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.35839998722076416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.21199999749660492,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.049800001084804535,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6410269737243652},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6250311732292175},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6093255281448364},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5877307653427124},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4118475914001465},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38468119502067566},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2493617832660675},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.206022709608078},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.081179678440094}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6410269737243652},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6250311732292175},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6093255281448364},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5877307653427124},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4118475914001465},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38468119502067566},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2493617832660675},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.206022709608078},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.081179678440094},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-020-03600-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03600-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03600-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32938371","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32938371","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:a4be45632fa44c6f8950f3b75e3337c9","is_oa":true,"landing_page_url":"https://doaj.org/article/a4be45632fa44c6f8950f3b75e3337c9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S8, Pp 1-18 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7493188","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7493188","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/665269","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/665269","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:ricerca.uniparthenope.it:11367/86253","is_oa":false,"landing_page_url":"http://hdl.handle.net/11367/86253","pdf_url":null,"source":{"id":"https://openalex.org/S4377196432","display_name":"CINECA IRIS Institutial research information system (Parthenope University of Naples)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183638586","host_organization_name":"Parthenope University of Naples","host_organization_lineage":["https://openalex.org/I183638586"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03600-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03600-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03600-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3087201089.pdf","grobid_xml":"https://content.openalex.org/works/W3087201089.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1194601030","https://openalex.org/W1644470444","https://openalex.org/W1843273176","https://openalex.org/W2009405916","https://openalex.org/W2015934148","https://openalex.org/W2016385245","https://openalex.org/W2024911966","https://openalex.org/W2027045099","https://openalex.org/W2027403155","https://openalex.org/W2048643046","https://openalex.org/W2054118816","https://openalex.org/W2054394841","https://openalex.org/W2076710572","https://openalex.org/W2081320767","https://openalex.org/W2083734879","https://openalex.org/W2091634201","https://openalex.org/W2096134087","https://openalex.org/W2100025509","https://openalex.org/W2101288419","https://openalex.org/W2114027069","https://openalex.org/W2126081368","https://openalex.org/W2129562311","https://openalex.org/W2130479394","https://openalex.org/W2133312664","https://openalex.org/W2137004773","https://openalex.org/W2137167381","https://openalex.org/W2160868144","https://openalex.org/W2171268876","https://openalex.org/W2343238565","https://openalex.org/W2554109484","https://openalex.org/W2557083319","https://openalex.org/W2611400920","https://openalex.org/W2767509030","https://openalex.org/W2774178591","https://openalex.org/W2980678340","https://openalex.org/W3201413583","https://openalex.org/W4230638849"],"related_works":["https://openalex.org/W3037187668","https://openalex.org/W2804364458","https://openalex.org/W4298130764","https://openalex.org/W2132641928","https://openalex.org/W4310225030","https://openalex.org/W2090259340","https://openalex.org/W2083665254","https://openalex.org/W2393816671","https://openalex.org/W1534720161","https://openalex.org/W1926736923"],"abstract_inverted_index":{"BACKGROUND:":[0],"Properly":[1],"scoring":[2,96,119,138,292],"protein-protein":[3],"docking":[4,30,53],"models":[5,54,111,153,200],"to":[6,62,87,247,309,324],"single":[7],"out":[8,212],"the":[9,35,40,64,79,91,110,117,122,151,159,162,174,182,189,193,203,207,214,220,224,234,238,244,248,255,260,271,280,290,296,299,325],"correct":[10],"ones":[11],"is":[12,317],"an":[13,56,103],"open":[14],"challenge,":[15],"also":[16,219],"object":[17],"of":[18,24,109,116,150,161,173,181,209,213,250],"assessment":[19],"in":[20,34,55,69,77,192,223,237,269,279],"CAPRI":[21,81,311],"(Critical":[22],"Assessment":[23],"PRedicted":[25],"Interactions),":[26],"a":[27,48,106,113,132,179,228],"community-wide":[28],"blind":[29],"experiment.":[31],"We":[32,71,217],"introduced":[33],"field":[36],"CONSRANK":[37,51,76,118,140],"(CONSensus":[38],"RANKing),":[39],"first":[41,190,221],"pure":[42],"consensus":[43],"method.":[44],"Also":[45],"available":[46,323],"as":[47,112,129,263,286,288,307],"web":[49],"server,":[50],"ranks":[52],"ensemble":[57],"based":[58,319],"on":[59,227,295,320],"their":[60,166],"ability":[61],"match":[63],"most":[65],"frequent":[66],"inter-residue":[67],"contacts":[68],"it.":[70],"have":[72],"been":[73],"blindly":[74],"testing":[75],"all":[78,254],"latest":[80,123],"rounds,":[82],"where":[83],"we":[84,100,127,185,242,266,273,315],"showed":[85],"it":[86],"perform":[88],"competitively":[89],"with":[90,131,143,230],"state-of-the-art":[92],"energy":[93],"and":[94,141,165,233,257,284,327],"knowledge-based":[95],"functions.":[97],"More":[98],"recently,":[99],"developed":[101],"Clust-CONSRANK,":[102,142],"algorithm":[104],"introducing":[105],"contact-based":[107],"clustering":[108],"preliminary":[114],"step":[115],"process.":[120],"In":[121],"CASP13-CAPRI":[124,194,261],"joint":[125],"experiment,":[126],"participated":[128],"scorers":[130,256],"novel":[133],"pipeline,":[134],"combining":[135],"both":[136],"our":[137,144,303],"tools,":[139],"interface":[145,175],"analysis":[146],"tool":[147],"COCOMAPS.":[148],"Selection":[149],"10":[152],"for":[154,206,302],"submission":[155],"was":[156,169],"guided":[157],"by":[158,171,187,332],"strength":[160],"emerging":[163],"consensus,":[164],"final":[167,281],"ranking":[168,245],"assisted":[170],"results":[172],"analysis.":[176],"RESULTS:":[177],"As":[178],"result":[180],"above":[183],"approach,":[184],"were":[186,218,298],"far":[188],"scorer":[191,222,236],"top-1":[195,204],"ranking,":[196,226,285],"having":[197],"high/medium":[198],"quality":[199],"ranked":[201],"at":[202],"position":[205],"majority":[208],"targets":[210,262,297],"(11":[211],"total":[215],"19).":[216],"top-10":[225],"par":[229],"another":[231],"group,":[232],"second":[235],"top-5":[239],"ranking.":[240],"Further,":[241],"topped":[243],"relative":[246],"prediction":[249],"binding":[251],"interfaces,":[252],"among":[253],"predictors.":[258],"Using":[259],"case":[264],"studies,":[265],"illustrate":[267],"here":[268],"detail":[270],"approach":[272,293,314],"adopted.":[274],"CONCLUSIONS:":[275],"Introducing":[276],"some":[277],"flexibility":[278],"model":[282],"selection":[283],"well":[287],"differentiating":[289],"adopted":[291],"depending":[294],"key":[300],"assets":[301],"highly":[304],"successful":[305],"performance,":[306],"compared":[308],"previous":[310],"rounds.":[312],"The":[313],"propose":[316],"entirely":[318],"methods":[321],"made":[322],"community":[326],"could":[328],"thus":[329],"be":[330],"reproduced":[331],"any":[333],"user.":[334]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
