{"id":"https://openalex.org/W3032982805","doi":"https://doi.org/10.1186/s12859-020-03568-5","title":"PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures","display_name":"PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures","publication_year":2020,"publication_date":"2020-06-05","ids":{"openalex":"https://openalex.org/W3032982805","doi":"https://doi.org/10.1186/s12859-020-03568-5","mag":"3032982805","pmid":"https://pubmed.ncbi.nlm.nih.gov/32503412"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03568-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03568-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03568-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03568-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112649073","display_name":"Mohammad Asif Emon","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Mohammad Asif Emon","raw_affiliation_strings":["Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53117, Bonn, Germany. mohammad.asif.emon@scai.fraunhofer.de","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany. mohammad.asif.emon@scai.fraunhofer.de","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9820-6925","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53117, Bonn, Germany. mohammad.asif.emon@scai.fraunhofer.de","institution_ids":["https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany. mohammad.asif.emon@scai.fraunhofer.de","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043459521","display_name":"Daniel Domingo\u2010Fern\u00e1nd\u00e9z","orcid":"https://orcid.org/0000-0002-2046-6145"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Domingo-Fern\u00e1ndez","raw_affiliation_strings":["Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53117, Bonn, Germany. daniel.domingo.fernandez@scai.fraunhofer.de","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany. daniel.domingo.fernandez@scai.fraunhofer.de","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53117, Bonn, Germany. daniel.domingo.fernandez@scai.fraunhofer.de","institution_ids":["https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany. daniel.domingo.fernandez@scai.fraunhofer.de","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065488553","display_name":"Charles Tapley Hoyt","orcid":"https://orcid.org/0000-0003-4423-4370"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Charles Tapley Hoyt","raw_affiliation_strings":["Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53117, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53117, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53117, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, 53117, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI), 53757, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5112649073"],"corresponding_institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.8946,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.71552512,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"21","issue":"1","first_page":"231","last_page":"231"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8296999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8296999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.05009999871253967,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.03319999948143959,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8781638145446777},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.7352105975151062},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6296420693397522},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.598567008972168},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5112836360931396},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.49708107113838196},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4635813236236572},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.4556272029876709},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34684911370277405},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34545302391052246},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.3176482617855072},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.30628204345703125},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.24043357372283936},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.17123138904571533},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10392066836357117},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10053354501724243},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.09614214301109314},{"id":"https://openalex.org/keywords/process-management","display_name":"Process management","score":0.09483137726783752}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8781638145446777},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.7352105975151062},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6296420693397522},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.598567008972168},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5112836360931396},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.49708107113838196},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4635813236236572},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.4556272029876709},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34684911370277405},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34545302391052246},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.3176482617855072},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30628204345703125},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24043357372283936},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.17123138904571533},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10392066836357117},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10053354501724243},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.09614214301109314},{"id":"https://openalex.org/C195094911","wikidata":"https://www.wikidata.org/wiki/Q14167904","display_name":"Process management","level":1,"score":0.09483137726783752},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-020-03568-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03568-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03568-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32503412","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32503412","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:ded9828f2cff4230b1baec5932ae64cf","is_oa":true,"landing_page_url":"https://doaj.org/article/ded9828f2cff4230b1baec5932ae64cf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-21 (2020)","raw_type":"article"},{"id":"pmh:oai:fraunhofer.de:N-592791","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-592791.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/262949","is_oa":true,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/262949","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7275349","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7275349","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:zenodo.org:3884366","is_oa":true,"landing_page_url":"https://zenodo.org/record/3884366","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics 21(1) 231","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03568-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03568-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03568-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3130801505","display_name":"Aetionomy \u2013 Organising Mechanistic Knowledge about Neurodegenerative Diseases for the Improvement of Drug Development and Therapy","funder_award_id":"115568","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6002116566","display_name":null,"funder_award_id":"115568","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G7364720146","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G816334174","display_name":null,"funder_award_id":"115568","funder_id":"https://openalex.org/F4320333065","funder_display_name":"Seventh Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320314178","display_name":"European Federation of Pharmaceutical Industries and Associations","ror":"https://ror.org/00g1x4v36"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321773","display_name":"Fraunhofer-Gesellschaft","ror":"https://ror.org/05hkkdn48"},{"id":"https://openalex.org/F4320333065","display_name":"Seventh Framework Programme","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3032982805.pdf","grobid_xml":"https://content.openalex.org/works/W3032982805.grobid-xml"},"referenced_works_count":103,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W435782705","https://openalex.org/W756073522","https://openalex.org/W1647671624","https://openalex.org/W1663154925","https://openalex.org/W1945773664","https://openalex.org/W1966165057","https://openalex.org/W1968928299","https://openalex.org/W1969208427","https://openalex.org/W1976502930","https://openalex.org/W1979188008","https://openalex.org/W1979834293","https://openalex.org/W1982945330","https://openalex.org/W1984789788","https://openalex.org/W1988098374","https://openalex.org/W1989277387","https://openalex.org/W1998284148","https://openalex.org/W2001502878","https://openalex.org/W2002820387","https://openalex.org/W2002889122","https://openalex.org/W2003738638","https://openalex.org/W2009080781","https://openalex.org/W2012660986","https://openalex.org/W2015808257","https://openalex.org/W2020132970","https://openalex.org/W2023553115","https://openalex.org/W2029442595","https://openalex.org/W2030603632","https://openalex.org/W2037653131","https://openalex.org/W2041934303","https://openalex.org/W2044424923","https://openalex.org/W2046711070","https://openalex.org/W2050130956","https://openalex.org/W2050574248","https://openalex.org/W2051158121","https://openalex.org/W2055619057","https://openalex.org/W2077318478","https://openalex.org/W2079158266","https://openalex.org/W2079554604","https://openalex.org/W2080946103","https://openalex.org/W2085484758","https://openalex.org/W2090808827","https://openalex.org/W2093313266","https://openalex.org/W2094791588","https://openalex.org/W2095032620","https://openalex.org/W2098967508","https://openalex.org/W2101357408","https://openalex.org/W2103335577","https://openalex.org/W2103368657","https://openalex.org/W2104697581","https://openalex.org/W2105014520","https://openalex.org/W2106248311","https://openalex.org/W2110065044","https://openalex.org/W2110687686","https://openalex.org/W2113897637","https://openalex.org/W2116868464","https://openalex.org/W2117007075","https://openalex.org/W2121001769","https://openalex.org/W2121485819","https://openalex.org/W2121604817","https://openalex.org/W2125808190","https://openalex.org/W2129370330","https://openalex.org/W2130410032","https://openalex.org/W2137632714","https://openalex.org/W2138512826","https://openalex.org/W2142260323","https://openalex.org/W2142879323","https://openalex.org/W2143251418","https://openalex.org/W2145825942","https://openalex.org/W2147018385","https://openalex.org/W2147241078","https://openalex.org/W2149808918","https://openalex.org/W2151357092","https://openalex.org/W2155157373","https://openalex.org/W2162408376","https://openalex.org/W2163037808","https://openalex.org/W2187351898","https://openalex.org/W2189251458","https://openalex.org/W2264877802","https://openalex.org/W2288271162","https://openalex.org/W2316959322","https://openalex.org/W2462053388","https://openalex.org/W2463737032","https://openalex.org/W2470708296","https://openalex.org/W2524066112","https://openalex.org/W2526969304","https://openalex.org/W2553642816","https://openalex.org/W2557530941","https://openalex.org/W2559588208","https://openalex.org/W2590029227","https://openalex.org/W2610653037","https://openalex.org/W2637847957","https://openalex.org/W2736912049","https://openalex.org/W2749491127","https://openalex.org/W2767891136","https://openalex.org/W2767914218","https://openalex.org/W2807625293","https://openalex.org/W2898977037","https://openalex.org/W2977393556","https://openalex.org/W3006508031","https://openalex.org/W4233698560","https://openalex.org/W4242404314","https://openalex.org/W6676962950"],"related_works":["https://openalex.org/W2506292322","https://openalex.org/W4283209547","https://openalex.org/W4281673370","https://openalex.org/W2006667691","https://openalex.org/W2886266969","https://openalex.org/W4367627632","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W3010058077","https://openalex.org/W2951512731"],"abstract_inverted_index":{"BACKGROUND:":[0],"During":[1],"the":[2,21,31,161,171,179],"last":[3],"decade,":[4],"there":[5,56],"has":[6],"been":[7],"a":[8,58,82],"surge":[9],"towards":[10],"computational":[11],"drug":[12,76,106,117,245],"repositioning":[13,203,248],"owing":[14],"to":[15,36,44,115,221,229],"constantly":[16],"increasing":[17],"-omics":[18],"data":[19,35,72,91,98,129,168],"in":[20,147,160,178],"biomedical":[22],"research":[23],"field.":[24],"While":[25],"numerous":[26],"existing":[27],"methods":[28,65],"focus":[29],"on":[30],"integration":[32,70,159],"of":[33,51,71,139,167,181],"heterogeneous":[34],"propose":[37],"candidate":[38,53],"drugs,":[39],"it":[40],"is":[41,57,262],"still":[42],"challenging":[43],"substantiate":[45],"their":[46,234],"results":[47],"with":[48,193],"mechanistic":[49,157],"insights":[50],"these":[52],"drugs.":[54,188],"Therefore,":[55],"need":[59],"for":[60,75,119,134,156,184,202,233,237,247],"more":[61],"innovative":[62],"and":[63,73,99,105,124,130,137,169,186,204],"efficient":[64],"which":[66,86],"can":[67,199,214],"enable":[68],"better":[69],"knowledge":[74,112,158],"repositioning.":[77,120],"RESULTS:":[78],"Here,":[79],"we":[80],"present":[81],"customizable":[83],"workflow":[84,172,224],"(PS4DR)":[85],"not":[87],"only":[88],"integrates":[89],"high-throughput":[90],"such":[92],"as":[93,208,210],"genome-wide":[94],"association":[95],"study":[96],"(GWAS)":[97],"gene":[100,131],"expression":[101,132],"signatures":[102,133,175],"from":[103,257],"disease":[104,216],"perturbations":[107],"but":[108],"also":[109],"takes":[110],"pathway":[111,152,174],"into":[113],"consideration":[114],"predict":[116,230],"candidates":[118,246],"We":[121,190,218],"have":[122],"collected":[123],"integrated":[125],"publicly":[126],"available":[127,264],"GWAS":[128],"several":[135,238],"diseases":[136],"hundreds":[138],"FDA-approved":[140,231],"drugs":[141,207,212,232],"or":[142],"those":[143],"under":[144],"clinical":[145],"trial":[146],"this":[148,164,197],"study.":[149],"Additionally,":[150],"different":[151],"databases":[153],"were":[154,219,250],"used":[155,201],"workflow.":[162],"Using":[163],"systematic":[165],"consolidation":[166],"knowledge,":[170],"computes":[173],"that":[176,213,249],"assist":[177],"prediction":[180],"new":[182,206],"indications":[183,236],"approved":[185],"investigational":[187],"CONCLUSION:":[189],"showcase":[191],"PS4DR":[192,241],"applications":[194],"demonstrating":[195,226],"how":[196],"tool":[198],"be":[200],"identifying":[205],"well":[209],"proposing":[211],"simulate":[215],"dysregulations.":[217],"able":[220],"validate":[222],"our":[223],"by":[225,253],"its":[227],"capability":[228],"known":[235],"diseases.":[239],"Further,":[240],"returned":[242],"many":[243],"potential":[244],"backed":[251],"up":[252],"epidemiological":[254],"evidence":[255],"extracted":[256],"scientific":[258],"literature.":[259],"Source":[260],"code":[261],"freely":[263],"at":[265],"https://github.com/ps4dr/ps4dr.":[266]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
