{"id":"https://openalex.org/W3080366061","doi":"https://doi.org/10.1186/s12859-020-03565-8","title":"ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community","display_name":"ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community","publication_year":2020,"publication_date":"2020-08-01","ids":{"openalex":"https://openalex.org/W3080366061","doi":"https://doi.org/10.1186/s12859-020-03565-8","mag":"3080366061","pmid":"https://pubmed.ncbi.nlm.nih.gov/32838759"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03565-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03565-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-020-03565-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-020-03565-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086235625","display_name":"Tiziana Castrignan\u00f2","orcid":"https://orcid.org/0000-0002-0689-6720"},"institutions":[{"id":"https://openalex.org/I138938424","display_name":"Universit\u00e0 degli Studi della Tuscia","ror":"https://ror.org/03svwq685","country_code":"IT","type":"education","lineage":["https://openalex.org/I138938424"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Tiziana Castrignan\u00f2","raw_affiliation_strings":["Department of Ecological and Biological Sciences (DEB), University of Tuscia, Viterbo, Italy. tiziana.castrignano@unitus.it","Department of Ecological and Biological Sciences (DEB), University of Tuscia, Viterbo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecological and Biological Sciences (DEB), University of Tuscia, Viterbo, Italy. tiziana.castrignano@unitus.it","institution_ids":["https://openalex.org/I138938424"]},{"raw_affiliation_string":"Department of Ecological and Biological Sciences (DEB), University of Tuscia, Viterbo, Italy","institution_ids":["https://openalex.org/I138938424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015232893","display_name":"Silvia Gioiosa","orcid":"https://orcid.org/0000-0003-1302-8320"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvia Gioiosa","raw_affiliation_strings":["CINECA, SuperComputing Applications and Innovation Department, Rome, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CINECA, SuperComputing Applications and Innovation Department, Rome, Italy","institution_ids":["https://openalex.org/I4210119786"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023632596","display_name":"Tiziano Flati","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tiziano Flati","raw_affiliation_strings":["CINECA, SuperComputing Applications and Innovation Department, Rome, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CINECA, SuperComputing Applications and Innovation Department, Rome, Italy","institution_ids":["https://openalex.org/I4210119786"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004690941","display_name":"Mirko Cestari","orcid":"https://orcid.org/0000-0002-6291-9720"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mirko Cestari","raw_affiliation_strings":["CINECA, SuperComputing Applications and Innovation Department, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CINECA, SuperComputing Applications and Innovation Department, Rome, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087315441","display_name":"Ernesto Picardi","orcid":"https://orcid.org/0000-0002-6549-0114"},"institutions":[{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ernesto Picardi","raw_affiliation_strings":["Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Bari, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Bari, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083679542","display_name":"Matteo Chiara","orcid":"https://orcid.org/0000-0003-3983-4961"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Matteo Chiara","raw_affiliation_strings":["Department of Biosciences, University of Milan, Milan, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosciences, University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039138842","display_name":"Maddalena Fratelli","orcid":"https://orcid.org/0000-0002-1769-3427"},"institutions":[{"id":"https://openalex.org/I19630809","display_name":"Mario Negri Institute for Pharmacological Research","ror":"https://ror.org/05aspc753","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I19630809","https://openalex.org/I4210110338","https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Maddalena Fratelli","raw_affiliation_strings":["IRCCS-Istituto di Ricerche Farmacologiche \"Mario Negri\", Milano, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRCCS-Istituto di Ricerche Farmacologiche \"Mario Negri\", Milano, Milan, Italy","institution_ids":["https://openalex.org/I19630809"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066052028","display_name":"Stefano Amente","orcid":"https://orcid.org/0000-0003-0612-6096"},"institutions":[{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Amente","raw_affiliation_strings":["Department of Molecular Medicine and Medical Biotechnologies, University of Naples 'Federico II', Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Medicine and Medical Biotechnologies, University of Naples 'Federico II', Naples, Italy","institution_ids":["https://openalex.org/I71267560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036700968","display_name":"Marco Cirilli","orcid":"https://orcid.org/0000-0003-2158-4773"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Cirilli","raw_affiliation_strings":["Department of Agricultural and Environmental Sciences - Production, Landscape, Agroenergy (DISAA), University of Milan, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agricultural and Environmental Sciences - Production, Landscape, Agroenergy (DISAA), University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013315777","display_name":"M. A. Tangaro","orcid":"https://orcid.org/0000-0003-3923-2266"},"institutions":[{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Antonio Tangaro","raw_affiliation_strings":["Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053356041","display_name":"Giovanni Chillemi","orcid":"https://orcid.org/0000-0003-3901-6926"},"institutions":[{"id":"https://openalex.org/I138938424","display_name":"Universit\u00e0 degli Studi della Tuscia","ror":"https://ror.org/03svwq685","country_code":"IT","type":"education","lineage":["https://openalex.org/I138938424"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Chillemi","raw_affiliation_strings":["Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), University of Tuscia, Viterbo, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department for Innovation in Biological, Agro-food and Forest systems (DIBAF), University of Tuscia, Viterbo, Italy","institution_ids":["https://openalex.org/I138938424"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005312066","display_name":"Graziano Pesole","orcid":"https://orcid.org/0000-0003-3663-0859"},"institutions":[{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Graziano Pesole","raw_affiliation_strings":["Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Bari, Italy. graziano.pesole@uniba.it","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy. graziano.pesole@uniba.it","Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Bari, Italy. graziano.pesole@uniba.it","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy. graziano.pesole@uniba.it","institution_ids":["https://openalex.org/I4210148743"]},{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Bari, Italy","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046629951","display_name":"Federico Zambelli","orcid":"https://orcid.org/0000-0003-3487-4331"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Federico Zambelli","raw_affiliation_strings":["Department of Biosciences, University of Milan, Milan, Italy. federico.zambelli@unimi.it","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy. federico.zambelli@unimi.it","Department of Biosciences, University of Milan, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosciences, University of Milan, Milan, Italy. federico.zambelli@unimi.it","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (IBIOM-CNR), Bari, Italy. federico.zambelli@unimi.it","institution_ids":["https://openalex.org/I4210148743"]},{"raw_affiliation_string":"Department of Biosciences, University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5086235625"],"corresponding_institution_ids":["https://openalex.org/I138938424"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.2506,"has_fulltext":true,"cited_by_count":56,"citation_normalized_percentile":{"value":0.8885878,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"21","issue":"S10","first_page":"352","last_page":"352"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.37959998846054077,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.37959998846054077,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.2793999910354614,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.14740000665187836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.7752878069877625},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7140284180641174},{"id":"https://openalex.org/keywords/elixir","display_name":"Elixir (programming language)","score":0.698441743850708},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6927554607391357},{"id":"https://openalex.org/keywords/provisioning","display_name":"Provisioning","score":0.5459139347076416},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5179933309555054},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5072936415672302},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4139710068702698},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34582164883613586},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3310067653656006},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.29849839210510254},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20837783813476562},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13197892904281616}],"concepts":[{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.7752878069877625},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7140284180641174},{"id":"https://openalex.org/C103472402","wikidata":"https://www.wikidata.org/wiki/Q5362035","display_name":"Elixir (programming language)","level":2,"score":0.698441743850708},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6927554607391357},{"id":"https://openalex.org/C172191483","wikidata":"https://www.wikidata.org/wiki/Q1071806","display_name":"Provisioning","level":2,"score":0.5459139347076416},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5179933309555054},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5072936415672302},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4139710068702698},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34582164883613586},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3310067653656006},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.29849839210510254},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20837783813476562},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13197892904281616},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000068239","descriptor_name":"Prunus persica","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000068239","descriptor_name":"Prunus persica","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000068239","descriptor_name":"Prunus persica","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046388","descriptor_name":"Swallows","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046388","descriptor_name":"Swallows","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046388","descriptor_name":"Swallows","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-020-03565-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03565-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-020-03565-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32838759","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32838759","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:art.torvergata.it:2108/397451","is_oa":true,"landing_page_url":"https://hdl.handle.net/2108/397451","pdf_url":null,"source":{"id":"https://openalex.org/S4306400993","display_name":"Cineca Institutional Research Information System (Tor Vergata University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I116067653","host_organization_name":"University of Rome Tor Vergata","host_organization_lineage":["https://openalex.org/I116067653"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7446135","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7446135","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:air.unimi.it:2434/759904","is_oa":true,"landing_page_url":"http://hdl.handle.net/2434/759904","pdf_url":null,"source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:fade78556bc14076b90853414e73b7e7","is_oa":true,"landing_page_url":"https://doaj.org/article/fade78556bc14076b90853414e73b7e7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S10, Pp 1-17 (2020)","raw_type":"article"},{"id":"pmh:oai:ricerca.uniba.it:11586/351743","is_oa":true,"landing_page_url":"https://hdl.handle.net/11586/351743","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03565-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03565-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-020-03565-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5199999809265137,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G468277736","display_name":null,"funder_award_id":"824087","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G5040315192","display_name":null,"funder_award_id":"676559","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G5933564417","display_name":null,"funder_award_id":"824087","funder_id":"https://openalex.org/F4320319638","funder_display_name":"EOSC-Life"},{"id":"https://openalex.org/G6315092050","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G8654708881","display_name":null,"funder_award_id":"857650","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320317295","display_name":"Dipartimenti di Eccellenza","ror":null},{"id":"https://openalex.org/F4320319638","display_name":"EOSC-Life","ror":null},{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334377","display_name":"Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali, Universit\u00e0 degli Studi della Tuscia","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3080366061.pdf","grobid_xml":"https://content.openalex.org/works/W3080366061.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1575937113","https://openalex.org/W1921457844","https://openalex.org/W1969219020","https://openalex.org/W1981509058","https://openalex.org/W2001032894","https://openalex.org/W2011985542","https://openalex.org/W2050109119","https://openalex.org/W2081930221","https://openalex.org/W2102231480","https://openalex.org/W2104846587","https://openalex.org/W2116041602","https://openalex.org/W2137786443","https://openalex.org/W2140126848","https://openalex.org/W2147736027","https://openalex.org/W2149573463","https://openalex.org/W2153498291","https://openalex.org/W2305228807","https://openalex.org/W2396849069","https://openalex.org/W2462797272","https://openalex.org/W2474208661","https://openalex.org/W2760921293","https://openalex.org/W2768618120","https://openalex.org/W2771813992","https://openalex.org/W2795930404","https://openalex.org/W2805689942","https://openalex.org/W2901196346","https://openalex.org/W2949542000"],"related_works":["https://openalex.org/W3160690796","https://openalex.org/W2945781956","https://openalex.org/W2966875286","https://openalex.org/W2900692317","https://openalex.org/W3003405015","https://openalex.org/W4383176220","https://openalex.org/W2749889710","https://openalex.org/W2922162671","https://openalex.org/W2808982106","https://openalex.org/W4285041552"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"advent":[2],"of":[3,21,42,61,91,180,203,207,216,222,231,263,292,311,314,333,346,359],"Next":[4],"Generation":[5],"Sequencing":[6],"(NGS)":[7],"technologies":[8],"and":[9,36,39,109,185,218,246,287,316,336,357],"the":[10,40,51,58,88,98,112,145,165,176,196,229,232,242,256,264,275,312,324,331,354,360,364],"concomitant":[11],"reduction":[12],"in":[13,24,94,270,283,330,367,384],"sequencing":[14],"costs":[15],"allows":[16,161],"unprecedented":[17],"high":[18],"throughput":[19],"profiling":[20],"biological":[22,29,45],"systems":[23,149,335],"a":[25,151,169,200],"cost-efficient":[26],"manner.":[27],"Modern":[28],"experiments":[30],"are":[31,126],"increasingly":[32],"becoming":[33,68],"both":[34],"data":[35,46,158,211],"computationally":[37],"intensive":[38],"wealth":[41,313],"publicly":[43,181],"available":[44,128,178,182],"is":[47,67],"introducing":[48],"bioinformatics":[49,157,244],"into":[50],"\"Big":[52],"Data\"":[53],"era.":[54],"For":[55],"these":[56],"reasons,":[57],"effective":[59,355],"application":[60],"High":[62,146],"Performance":[63,147],"Computing":[64,148],"(HPC)":[65],"architectures":[66],"progressively":[69],"more":[70],"recognized":[71],"also":[72],"by":[73,87,140,308,320,363],"bioinformaticians.":[74],"Here":[75],"we":[76,236,372],"describe":[77],"HPC":[78,121,334],"resources":[79,122,361],"provisioning":[80],"pilot":[81,113],"programs":[82,345],"dedicated":[83,134],"to":[84,120,133,144,162,164,195,255,261,277,288,305,326,340,342],"bioinformaticians,":[85],"run":[86],"Italian":[89,100,243,251],"Node":[90],"ELIXIR":[92],"(ELIXIR-IT)":[93],"collaboration":[95],"with":[96,175],"CINECA,":[97,321],"main":[99],"supercomputing":[101,268],"center.":[102],"RESULTS:":[103],"Starting":[104],"from":[105],"April":[106],"2016,":[107],"CINECA":[108,138],"ELIXIR-IT":[110,233],"launched":[111],"Call":[114],"\"ELIXIR-IT":[115],"HPC@CINECA\",":[116],"offering":[117],"streamlined":[118],"access":[119,143,194,260],"for":[123,156,199,210],"bioinformatics.":[124],"Resources":[125],"made":[127],"either":[129],"through":[130,150],"web":[131],"front-ends":[132],"workflows":[135],"developed":[136],"at":[137],"or":[139,303],"providing":[141],"direct":[142],"standard":[152],"command-line":[153],"interface":[154],"tailored":[155],"analysis.":[159],"This":[160],"offer":[163],"biomedical":[166],"research":[167,190,285,295,369],"community":[168,245],"production":[170],"scale":[171],"environment,":[172],"continuously":[173],"updated":[174],"latest":[177],"versions":[179],"reference":[183],"datasets":[184],"bioinformatic":[186],"tools.":[187],"Currently,":[188],"63":[189],"projects":[191,286],"have":[192,258,299,379],"gained":[193,259],"HPC@CINECA":[197,234],"program,":[198,235],"total":[201],"handout":[202],"~":[204,213,219],"8":[205],"Millions":[206],"CPU/hours":[208],"and,":[209],"storage,":[212],"100":[214],"TB":[215,221],"permanent":[217],"300":[220],"temporary":[223],"space.":[224],"CONCLUSIONS:":[225],"Three":[226],"years":[227],"after":[228],"beginning":[230],"can":[237],"appreciate":[238],"its":[239],"impact":[240,358],"over":[241],"draw":[247],"some":[248],"considerations.":[249],"Several":[250],"researchers":[252],"who":[253],"applied":[254],"program":[257,365],"one":[262],"top-ranking":[265],"public":[266],"scientific":[267],"facilities":[269],"Europe.":[271],"Those":[272],"investigators":[273],"had":[274,323],"opportunity":[276,325],"sensibly":[278],"reduce":[279],"computational":[280],"turnaround":[281],"times":[282],"their":[284,328,382],"process":[289],"massive":[290],"amounts":[291],"data,":[293],"pursuing":[294],"approaches":[296],"that":[297],"would":[298],"been":[300],"otherwise":[301],"difficult":[302],"impossible":[304],"undertake.":[306],"Moreover,":[307],"taking":[309],"advantage":[310],"documentation":[315],"training":[317],"material":[318],"provided":[319],"participants":[322],"improve":[327],"skills":[329],"usage":[332,356],"be":[337],"better":[338],"positioned":[339],"apply":[341],"similar":[343],"EU":[344],"greater":[347],"scale,":[348],"such":[349],"as":[350],"PRACE.":[351],"To":[352],"illustrate":[353],"awarded":[362],"-":[366,371],"different":[368],"applications":[370],"report":[373],"five":[374],"successful":[375],"use":[376],"cases,":[377],"which":[378],"already":[380],"published":[381],"findings":[383],"peer-reviewed":[385],"journals.":[386]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2}],"updated_date":"2026-06-02T09:04:35.204637","created_date":"2025-10-10T00:00:00"}
