{"id":"https://openalex.org/W2998197489","doi":"https://doi.org/10.1186/s12859-019-3327-y","title":"Antimicrobial peptide identification using multi-scale convolutional network","display_name":"Antimicrobial peptide identification using multi-scale convolutional network","publication_year":2019,"publication_date":"2019-12-01","ids":{"openalex":"https://openalex.org/W2998197489","doi":"https://doi.org/10.1186/s12859-019-3327-y","mag":"2998197489","pmid":"https://pubmed.ncbi.nlm.nih.gov/31870282"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3327-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3327-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3327-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3327-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008059019","display_name":"Xin Su","orcid":null},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xin Su","raw_affiliation_strings":["College of Artificial Intelligence, Nankai University, Tongyan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nankai University, Tongyan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042066408","display_name":"Jing Xu","orcid":"https://orcid.org/0000-0001-8532-2241"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Xu","raw_affiliation_strings":["College of Computer Science, Nankai University, Tongyan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science, Nankai University, Tongyan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090843422","display_name":"Yanbin Yin","orcid":"https://orcid.org/0000-0001-7667-881X"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanbin Yin","raw_affiliation_strings":["Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, 1400 R Street, Lincoln, NE, 68588, USA"],"affiliations":[{"raw_affiliation_string":"Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, 1400 R Street, Lincoln, NE, 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082071336","display_name":"Xiongwen Quan","orcid":"https://orcid.org/0000-0003-4138-4365"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiongwen Quan","raw_affiliation_strings":["College of Artificial Intelligence, Nankai University, Tongyan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nankai University, Tongyan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100399265","display_name":"Han Zhang","orcid":"https://orcid.org/0000-0001-8498-3451"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Zhang","raw_affiliation_strings":["College of Artificial Intelligence, Nankai University, Tongyan Road, Tianjin, 300350, China. zhanghan@nankai.edu.cn","College of Artificial Intelligence, Nankai University, Tongyan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence, Nankai University, Tongyan Road, Tianjin, 300350, China. zhanghan@nankai.edu.cn","institution_ids":["https://openalex.org/I205237279"]},{"raw_affiliation_string":"College of Artificial Intelligence, Nankai University, Tongyan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I205237279"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008059019"],"corresponding_institution_ids":["https://openalex.org/I205237279"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.1057,"has_fulltext":true,"cited_by_count":81,"citation_normalized_percentile":{"value":0.96349979,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"20","issue":"1","first_page":"730","last_page":"730"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6919559240341187},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6441035270690918},{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.49173977971076965},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48018231987953186},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.4631573259830475},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.460247665643692},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4477241635322571},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35750508308410645},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.2529258728027344},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13964241743087769},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0860852301120758},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.07902568578720093},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.07121530175209045},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.06081634759902954}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6919559240341187},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6441035270690918},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.49173977971076965},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48018231987953186},{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.4631573259830475},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.460247665643692},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4477241635322571},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35750508308410645},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.2529258728027344},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13964241743087769},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0860852301120758},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.07902568578720093},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.07121530175209045},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.06081634759902954},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-019-3327-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3327-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3327-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31870282","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31870282","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digitalcommons.unl.edu:foodsciefacpub-1363","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/foodsciefacpub/363","pdf_url":null,"source":{"id":"https://openalex.org/S4306513441","display_name":"Insecta mundi","issn_l":"0749-6737","issn":["0749-6737","1942-1354","1942-1362"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310316217","host_organization_name":"Center for Systematic Entomology","host_organization_lineage":["https://openalex.org/P4310316217"],"host_organization_lineage_names":["Center for Systematic Entomology"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Department of Food Science and Technology: Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:37b5b697b7e641af9b62dac818147e08","is_oa":true,"landing_page_url":"https://doaj.org/article/37b5b697b7e641af9b62dac818147e08","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-10 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6929291","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6929291","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3327-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3327-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3327-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3556308910","display_name":null,"funder_award_id":"61973174","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6047315943","display_name":null,"funder_award_id":"61973174","funder_id":"https://openalex.org/F4320323021","funder_display_name":"Nankai University"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323021","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2998197489.pdf","grobid_xml":"https://content.openalex.org/works/W2998197489.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W46659105","https://openalex.org/W1501531009","https://openalex.org/W1596947964","https://openalex.org/W1665214252","https://openalex.org/W1964655247","https://openalex.org/W1978444624","https://openalex.org/W1981705708","https://openalex.org/W1985258458","https://openalex.org/W1998064689","https://openalex.org/W2006850010","https://openalex.org/W2057198053","https://openalex.org/W2064675550","https://openalex.org/W2067402644","https://openalex.org/W2083416546","https://openalex.org/W2097834518","https://openalex.org/W2112862199","https://openalex.org/W2117767830","https://openalex.org/W2128495797","https://openalex.org/W2129115651","https://openalex.org/W2130253098","https://openalex.org/W2142920810","https://openalex.org/W2163316049","https://openalex.org/W2175270296","https://openalex.org/W2248620004","https://openalex.org/W2250539671","https://openalex.org/W2302517508","https://openalex.org/W2489487449","https://openalex.org/W2525580669","https://openalex.org/W2577513693","https://openalex.org/W2588463038","https://openalex.org/W2588467130","https://openalex.org/W2620760558","https://openalex.org/W2765651856","https://openalex.org/W2791848964","https://openalex.org/W2794956775","https://openalex.org/W2919115771","https://openalex.org/W2930957955","https://openalex.org/W2950577311","https://openalex.org/W2953384591","https://openalex.org/W2982118748","https://openalex.org/W2996489182","https://openalex.org/W3122775348","https://openalex.org/W6713134421"],"related_works":["https://openalex.org/W2358368915","https://openalex.org/W2380741856","https://openalex.org/W2348658803","https://openalex.org/W1973192249","https://openalex.org/W2354039930","https://openalex.org/W4375855538","https://openalex.org/W3087020980","https://openalex.org/W2107525095","https://openalex.org/W4211241221","https://openalex.org/W2511368942"],"abstract_inverted_index":{"Multi-scale":[0],"convolutional":[1],"network":[2,11],"is":[3],"a":[4],"novel":[5],"addition":[6],"to":[7],"existing":[8],"deep":[9],"neural":[10],"(DNN)":[12],"models.":[13],"The":[14,31],"proposed":[15],"DNN":[16],"model":[17,22],"and":[18,34],"the":[19,24],"modified":[20],"fusion":[21],"outperform":[23],"state-of-the-art":[25],"models":[26],"for":[27],"new":[28],"AMP":[29],"discovery.":[30],"source":[32],"code":[33],"data":[35],"are":[36],"available":[37],"at":[38],"https://github.com/zhanglabNKU/APIN.":[39]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":17}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
