{"id":"https://openalex.org/W3003315801","doi":"https://doi.org/10.1186/s12859-019-3296-1","title":"Evolving knowledge graph similarity for supervised learning in complex biomedical domains","display_name":"Evolving knowledge graph similarity for supervised learning in complex biomedical domains","publication_year":2020,"publication_date":"2020-01-03","ids":{"openalex":"https://openalex.org/W3003315801","doi":"https://doi.org/10.1186/s12859-019-3296-1","mag":"3003315801","pmid":"https://pubmed.ncbi.nlm.nih.gov/31900127"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3296-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3296-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3296-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3296-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063408223","display_name":"Rita T. Sousa","orcid":"https://orcid.org/0000-0002-7241-8970"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Rita T. Sousa","raw_affiliation_strings":["LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal. risousa@ciencias.ulisboa.pt","LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-7241-8970","affiliations":[{"raw_affiliation_string":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal. risousa@ciencias.ulisboa.pt","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100694882","display_name":"Sara Silva","orcid":"https://orcid.org/0000-0001-8223-4799"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Sara Silva","raw_affiliation_strings":["LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034898355","display_name":"C\u00e1tia Pesquita","orcid":"https://orcid.org/0000-0002-1847-9393"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Catia Pesquita","raw_affiliation_strings":["LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5063408223"],"corresponding_institution_ids":["https://openalex.org/I141596103"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.6676,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.90801601,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"6","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7523999810218811,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7523999810218811,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.10599999874830246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.04230000078678131,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7811399102210999},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.7676352262496948},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5896484851837158},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5644949674606323},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5354426503181458},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5061199069023132},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48258745670318604},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.42242786288261414},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.38778677582740784},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36204755306243896},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.15505945682525635}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7811399102210999},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.7676352262496948},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5896484851837158},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5644949674606323},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5354426503181458},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5061199069023132},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48258745670318604},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.42242786288261414},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.38778677582740784},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36204755306243896},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.15505945682525635},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-3296-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3296-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3296-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31900127","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31900127","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:5ee522cbbc864d78a4d28690ea1ffccc","is_oa":false,"landing_page_url":"https://doaj.org/article/5ee522cbbc864d78a4d28690ea1ffccc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-19 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6942314","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6942314","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3296-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3296-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3296-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G290693955","display_name":null,"funder_award_id":"PTDC/EMS-SIS/0642/2014","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5454278309","display_name":null,"funder_award_id":"/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5935811819","display_name":null,"funder_award_id":"UID/CEC/00408/2019","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6069306475","display_name":null,"funder_award_id":"SFRH/BD/145377/2019","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G679666962","display_name":"Personalized therapy for RhEumatic DIseases via machine learning","funder_award_id":"PTDC/CCI-CIF/29877/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6926593413","display_name":null,"funder_award_id":"PTDC/CCI-INF/29168/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3003315801.pdf","grobid_xml":"https://content.openalex.org/works/W3003315801.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W140982117","https://openalex.org/W1495712943","https://openalex.org/W1512383952","https://openalex.org/W1517294127","https://openalex.org/W1576818901","https://openalex.org/W1589720045","https://openalex.org/W1668989518","https://openalex.org/W1683397350","https://openalex.org/W1818881584","https://openalex.org/W1842847600","https://openalex.org/W1918164078","https://openalex.org/W1918391659","https://openalex.org/W1920052317","https://openalex.org/W1958717431","https://openalex.org/W1978196155","https://openalex.org/W1980160222","https://openalex.org/W1989034333","https://openalex.org/W2008081023","https://openalex.org/W2012361142","https://openalex.org/W2028704597","https://openalex.org/W2035894445","https://openalex.org/W2037343293","https://openalex.org/W2042301222","https://openalex.org/W2070448217","https://openalex.org/W2078990125","https://openalex.org/W2079708060","https://openalex.org/W2084168100","https://openalex.org/W2087159174","https://openalex.org/W2099364528","https://openalex.org/W2099862356","https://openalex.org/W2100827857","https://openalex.org/W2101234009","https://openalex.org/W2103017472","https://openalex.org/W2105813018","https://openalex.org/W2108181223","https://openalex.org/W2108984616","https://openalex.org/W2120770540","https://openalex.org/W2121105117","https://openalex.org/W2123047239","https://openalex.org/W2133109597","https://openalex.org/W2134197776","https://openalex.org/W2136410628","https://openalex.org/W2140141795","https://openalex.org/W2146495783","https://openalex.org/W2158934641","https://openalex.org/W2164289561","https://openalex.org/W2164290176","https://openalex.org/W2174598314","https://openalex.org/W2233554446","https://openalex.org/W2275841169","https://openalex.org/W2337686908","https://openalex.org/W2338910273","https://openalex.org/W2346933546","https://openalex.org/W2395714611","https://openalex.org/W2417863416","https://openalex.org/W2497951974","https://openalex.org/W2523679382","https://openalex.org/W2572147858","https://openalex.org/W2763934033","https://openalex.org/W2769427361","https://openalex.org/W2786757148","https://openalex.org/W2887809899","https://openalex.org/W2890200636","https://openalex.org/W2950225692","https://openalex.org/W4285719527","https://openalex.org/W4293249558","https://openalex.org/W6629043682","https://openalex.org/W6773842061"],"related_works":["https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W2012019886","https://openalex.org/W2388928357","https://openalex.org/W2166090428","https://openalex.org/W2380654781","https://openalex.org/W2114797768","https://openalex.org/W2176214140","https://openalex.org/W2516873349","https://openalex.org/W1990601549"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"recent":[2],"years,":[3],"biomedical":[4],"ontologies":[5,60],"have":[6,28,104],"become":[7],"important":[8],"for":[9,68,79,89,135,149,193,205,237],"describing":[10],"existing":[11],"biological":[12],"knowledge":[13,18,26,159,220],"in":[14,219],"the":[15,42,82,128,132,154,158,199,217,225,251],"form":[16],"of":[17,85,117,127,174,191,201,216],"graphs.":[19],"Data":[20],"mining":[21],"approaches":[22,53],"that":[23,38,54,110],"work":[24],"with":[25,188,207],"graphs":[27],"been":[29],"proposed,":[30],"but":[31],"they":[32],"are":[33],"based":[34,122],"on":[35,99,123,145],"vector":[36],"representations":[37],"do":[39],"not":[40,94],"capture":[41],"full":[43],"underlying":[44],"semantics.":[45],"An":[46],"alternative":[47],"is":[48,93],"to":[49,74,77,130,161,184,227,244,253],"use":[50],"machine":[51],"learning":[52,71,91,139],"explore":[55],"semantic":[56,65,86,118,125,163,175,222],"similarity.":[57],"However,":[58],"since":[59],"can":[61,213],"model":[62],"multiple":[63],"perspectives,":[64],"similarity":[66,87,119,223],"computations":[67],"a":[69,106,115,124,136,238],"given":[70,137,239],"task":[72,92],"need":[73,226],"be":[75,233],"fine-tuned":[76],"account":[78,236],"this.":[80],"Obtaining":[81],"best":[83,133],"combination":[84,134],"aspects":[88,176,231],"each":[90,121],"trivial":[95],"and":[96,165,195],"typically":[97],"depends":[98],"expert":[100,178],"knowledge.":[101,179],"RESULTS:":[102],"We":[103],"developed":[105],"novel":[107],"approach,":[108],"evoKGsim,":[109],"applies":[111],"Genetic":[112],"Programming":[113],"over":[114],"set":[116],"features,":[120],"aspect":[126],"data,":[129],"obtain":[131],"supervised":[138],"task.":[140],"The":[141],"approach":[142],"was":[143,181],"evaluated":[144],"several":[146],"benchmark":[147],"datasets":[148],"protein-protein":[150,203,245],"interaction":[151,246],"prediction":[152,247],"using":[153],"Gene":[155],"Ontology":[156],"as":[157],"graph":[160],"support":[162],"similarity,":[164],"it":[166],"outperformed":[167],"competing":[168],"strategies,":[169],"including":[170],"manually":[171],"selected":[172],"combinations":[173,190],"emulating":[177],"evoKGsim":[180,212],"also":[182],"able":[183],"learn":[185],"species-agnostic":[186],"models":[187],"different":[189],"species":[192,206],"training":[194],"testing,":[196],"effectively":[197],"addressing":[198],"limitations":[200,218],"predicting":[202],"interactions":[204],"fewer":[208],"known":[209],"interactions.":[210],"CONCLUSIONS:":[211],"overcome":[214],"one":[215],"graph-based":[221],"applications:":[224],"expertly":[228],"select":[229],"which":[230],"should":[232],"taken":[234],"into":[235],"application.":[240],"Applying":[241],"this":[242],"methodology":[243],"proved":[248],"successful,":[249],"paving":[250],"way":[252],"broader":[254],"applications.":[255]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":8}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
