{"id":"https://openalex.org/W2998581384","doi":"https://doi.org/10.1186/s12859-019-3268-5","title":"Using discriminative vector machine model with 2DPCA to predict interactions among proteins","display_name":"Using discriminative vector machine model with 2DPCA to predict interactions among proteins","publication_year":2019,"publication_date":"2019-12-01","ids":{"openalex":"https://openalex.org/W2998581384","doi":"https://doi.org/10.1186/s12859-019-3268-5","mag":"2998581384","pmid":"https://pubmed.ncbi.nlm.nih.gov/31874626"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3268-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3268-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3268-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3268-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100734156","display_name":"Zhengwei Li","orcid":"https://orcid.org/0000-0003-1644-1006"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]},{"id":"https://openalex.org/I4210102873","display_name":"Kunshan Govisionox Optoelectronic (China)","ror":"https://ror.org/01bqq8340","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210102873"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengwei Li","raw_affiliation_strings":["Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Shanghai, 201804, China","KUNPAND Communications (Kunshan) Co., Ltd., Suzhou, 215300, China","Mine Digitization Engineering Research Center of Ministry of Education, China University of Mining and Technology, Xuzhou, 221116, China","School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, 221116, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Shanghai, 201804, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"KUNPAND Communications (Kunshan) Co., Ltd., Suzhou, 215300, China","institution_ids":["https://openalex.org/I4210102873"]},{"raw_affiliation_string":"Mine Digitization Engineering Research Center of Ministry of Education, China University of Mining and Technology, Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101948619","display_name":"Ru Nie","orcid":"https://orcid.org/0000-0003-4729-167X"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ru Nie","raw_affiliation_strings":["Mine Digitization Engineering Research Center of Ministry of Education, China University of Mining and Technology, Xuzhou, 221116, China. ivancumt@126.com","School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, 221116, China. ivancumt@126.com","School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, 221116, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mine Digitization Engineering Research Center of Ministry of Education, China University of Mining and Technology, Xuzhou, 221116, China. ivancumt@126.com","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, 221116, China. ivancumt@126.com","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuhong You","raw_affiliation_strings":["Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, Urumqi, 830011, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, Urumqi, 830011, China","institution_ids":["https://openalex.org/I4210106108"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100611825","display_name":"Chen Cao","orcid":"https://orcid.org/0000-0001-5343-808X"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]},{"id":"https://openalex.org/I2802127220","display_name":"Alberta Children's Hospital","ror":"https://ror.org/00sx29x36","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2802127220"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chen Cao","raw_affiliation_strings":["Departments of Biochemistry & Molecular Biology and Medical Genetics, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, T2N 4N1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Biochemistry & Molecular Biology and Medical Genetics, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, T2N 4N1, Canada","institution_ids":["https://openalex.org/I168635309","https://openalex.org/I2802127220"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070359684","display_name":"Jiashu Li","orcid":"https://orcid.org/0009-0009-6686-3857"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiashu Li","raw_affiliation_strings":["Mine Digitization Engineering Research Center of Ministry of Education, China University of Mining and Technology, Xuzhou, 221116, China. lijiashu7646@163.com","Mine Digitization Engineering Research Center of Ministry of Education, China University of Mining and Technology, Xuzhou, 221116, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mine Digitization Engineering Research Center of Ministry of Education, China University of Mining and Technology, Xuzhou, 221116, China. lijiashu7646@163.com","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"Mine Digitization Engineering Research Center of Ministry of Education, China University of Mining and Technology, Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070359684","https://openalex.org/A5101948619"],"corresponding_institution_ids":["https://openalex.org/I25757504"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.531,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.63926126,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"20","issue":"S25","first_page":"694","last_page":"694"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8762999773025513,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8762999773025513,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.09319999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.007899999618530273,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.8250006437301636},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.617834210395813},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5783753991127014},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5296043157577515},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49435925483703613},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4580281376838684},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.44355759024620056},{"id":"https://openalex.org/keywords/vector","display_name":"Vector (molecular biology)","score":0.43249380588531494},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.36797332763671875},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.334482878446579},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3114612400531769},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2056477665901184},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11206138134002686}],"concepts":[{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.8250006437301636},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.617834210395813},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5783753991127014},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5296043157577515},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49435925483703613},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4580281376838684},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.44355759024620056},{"id":"https://openalex.org/C92087593","wikidata":"https://www.wikidata.org/wiki/Q427389","display_name":"Vector (molecular biology)","level":4,"score":0.43249380588531494},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.36797332763671875},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.334482878446579},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3114612400531769},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2056477665901184},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11206138134002686},{"id":"https://openalex.org/C40767141","wikidata":"https://www.wikidata.org/wiki/Q285697","display_name":"Recombinant DNA","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016480","descriptor_name":"Helicobacter pylori","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-019-3268-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3268-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3268-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31874626","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31874626","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:doi:10.11575/prism/44763","is_oa":false,"landing_page_url":"http://hdl.handle.net/1880/111391","pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:35045953affc4d17a2919a11f5d7a130","is_oa":false,"landing_page_url":"https://doaj.org/article/35045953affc4d17a2919a11f5d7a130","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss S25, Pp 1-9 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6929273","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6929273","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3268-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3268-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3268-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.7099999785423279,"id":"https://metadata.un.org/sdg/10"}],"awards":[{"id":"https://openalex.org/G1851553357","display_name":null,"funder_award_id":"61873270","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G74711194","display_name":"\u57fa\u56e0\u7ec4\u975e\u7f16\u7801\u533a\u53d8\u5f02\u4e0e\u8f6c\u5f55\u56e0\u5b50\u8c03\u63a7\u5173\u7cfb\u7684\u8ba1\u7b97\u5206\u6790\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61732012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2998581384.pdf","grobid_xml":"https://content.openalex.org/works/W2998581384.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1193984273","https://openalex.org/W1884509322","https://openalex.org/W1963916671","https://openalex.org/W1975305782","https://openalex.org/W1982267716","https://openalex.org/W2037036397","https://openalex.org/W2040941311","https://openalex.org/W2057885377","https://openalex.org/W2075582876","https://openalex.org/W2089026157","https://openalex.org/W2099426927","https://openalex.org/W2102544846","https://openalex.org/W2108211735","https://openalex.org/W2109248504","https://openalex.org/W2110336366","https://openalex.org/W2113019448","https://openalex.org/W2116089841","https://openalex.org/W2119583098","https://openalex.org/W2132582966","https://openalex.org/W2135160607","https://openalex.org/W2137823674","https://openalex.org/W2140960822","https://openalex.org/W2146312020","https://openalex.org/W2149676146","https://openalex.org/W2150452800","https://openalex.org/W2152705149","https://openalex.org/W2155004936","https://openalex.org/W2158714788","https://openalex.org/W2162392441","https://openalex.org/W2165145683","https://openalex.org/W2167869241","https://openalex.org/W2213532196","https://openalex.org/W2344144945","https://openalex.org/W2398350456","https://openalex.org/W2513180055","https://openalex.org/W2547150868","https://openalex.org/W2590039752","https://openalex.org/W2612377862","https://openalex.org/W4233751197","https://openalex.org/W4252706339"],"related_works":["https://openalex.org/W2965546495","https://openalex.org/W4389116644","https://openalex.org/W2153315159","https://openalex.org/W3103844505","https://openalex.org/W259157601","https://openalex.org/W4205463238","https://openalex.org/W2110523656","https://openalex.org/W1482209366","https://openalex.org/W2521627374","https://openalex.org/W2981954115"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,42],"interactions":[2,20,53],"among":[3,54],"proteins":[4],"act":[5],"as":[6,163,165,247],"crucial":[7],"roles":[8],"in":[9,45,65,254],"most":[10],"cellular":[11],"processes.":[12],"Despite":[13],"enormous":[14],"effort":[15],"put":[16],"for":[17,51,219,240],"identifying":[18,220,241],"protein-protein":[19],"(PPIs)":[21],"from":[22,119],"a":[23,60,73,89,109,134,173,248],"large":[24],"number":[25],"of":[26,44,63,80,124,131,152,166,209],"organisms,":[27],"existing":[28],"firsthand":[29],"biological":[30],"experimental":[31,231],"methods":[32,47],"are":[33],"high":[34,39,164],"cost,":[35],"low":[36],"efficiency,":[37],"and":[38,56,88,136,154,168,190,244],"false-positive":[40],"rate.":[41],"application":[43],"silico":[46],"opens":[48],"new":[49],"doors":[50],"predicting":[52],"proteins,":[55],"has":[57],"been":[58],"attracted":[59],"great":[61],"deal":[62],"attention":[64],"the":[66,78,129,206,230],"last":[67],"decades.":[68],"RESULTS:":[69],"Here":[70],"we":[71,181,213],"present":[72],"novelty":[74],"computational":[75],"model":[76,87,158,189,196],"with":[77,194],"adoption":[79],"our":[81,157,195,210,235],"proposed":[82,211],"Discriminative":[83],"Vector":[84,184],"Machine":[85],"(DVM)":[86],"2-Dimensional":[90],"Principal":[91],"Component":[92],"Analysis":[93],"(2DPCA)":[94],"descriptor":[95,111],"to":[96,114,142,203,251],"identify":[97],"candidate":[98],"PPIs":[99,222,243],"only":[100],"based":[101,187],"on":[102,147,197,223],"protein":[103],"sequences.":[104],"To":[105],"be":[106],"more":[107],"specific,":[108],"2DPCA":[110],"is":[112,140,237],"employed":[113,141],"capture":[115],"discriminative":[116],"feature":[117],"information":[118],"Position-Specific":[120],"Scoring":[121],"Matrix":[122],"(PSSM)":[123],"amino":[125],"acid":[126],"sequences":[127],"by":[128],"tool":[130],"PSI-BLAST.":[132],"Then,":[133],"robust":[135],"powerful":[137],"DVM":[138],"classifier":[139],"infer":[143],"PPIs.":[144],"When":[145],"applied":[146],"both":[148],"gold":[149],"benchmark":[150,199],"datasets":[151],"Yeast":[153],"H.":[155],"pylori,":[156],"obtained":[159],"mean":[160],"prediction":[161],"accuracies":[162],"97.06":[167],"92.89%,":[169],"respectively,":[170],"which":[171],"demonstrates":[172],"noticeable":[174],"improvement":[175],"than":[176],"some":[177],"state-of-the-art":[178],"methods.":[179],"Moreover,":[180],"constructed":[182],"Support":[183],"Machines":[185],"(SVM)":[186],"predictive":[188,207],"made":[191],"comparison":[192],"it":[193],"Human":[198],"dataset.":[200],"In":[201],"addition,":[202],"further":[204],"demonstrate":[205],"reliability":[208],"method,":[212],"also":[214],"carried":[215],"out":[216],"extensive":[217],"experiments":[218],"cross-species":[221],"five":[224],"other":[225],"species":[226],"datasets.":[227],"CONCLUSIONS:":[228],"All":[229],"results":[232],"indicate":[233],"that":[234],"method":[236],"very":[238],"effective":[239],"potential":[242],"could":[245],"serve":[246],"practical":[249],"approach":[250],"aid":[252],"bioexperiment":[253],"proteomics":[255],"research.":[256]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
