{"id":"https://openalex.org/W2998233925","doi":"https://doi.org/10.1186/s12859-019-3226-2","title":"VariFAST: a variant filter by automated scoring based on tagged-signatures","display_name":"VariFAST: a variant filter by automated scoring based on tagged-signatures","publication_year":2019,"publication_date":"2019-12-01","ids":{"openalex":"https://openalex.org/W2998233925","doi":"https://doi.org/10.1186/s12859-019-3226-2","mag":"2998233925","pmid":"https://pubmed.ncbi.nlm.nih.gov/31888441"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3226-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3226-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3226-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3226-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100438442","display_name":"Hang Zhang","orcid":"https://orcid.org/0000-0001-9573-1372"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210114506","display_name":"Ministry of Education","ror":"https://ror.org/01p262204","country_code":"KR","type":"government","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210114506"]}],"countries":["CN","KR"],"is_corresponding":false,"raw_author_name":"Hang Zhang","raw_affiliation_strings":["Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210114506"]},{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100360165","display_name":"Ke Wang","orcid":"https://orcid.org/0009-0003-7466-7115"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210114506","display_name":"Ministry of Education","ror":"https://ror.org/01p262204","country_code":"KR","type":"government","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210114506"]}],"countries":["CN","KR"],"is_corresponding":false,"raw_author_name":"Ke Wang","raw_affiliation_strings":["Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210114506"]},{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100737051","display_name":"Juan Zhou","orcid":"https://orcid.org/0000-0003-1588-2168"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210114506","display_name":"Ministry of Education","ror":"https://ror.org/01p262204","country_code":"KR","type":"government","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210114506"]}],"countries":["CN","KR"],"is_corresponding":false,"raw_author_name":"Juan Zhou","raw_affiliation_strings":["Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210114506"]},{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100385453","display_name":"Jianhua Chen","orcid":"https://orcid.org/0000-0003-0326-3124"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I2802690428","display_name":"Shanghai Mental Health Center","ror":"https://ror.org/05bd2wa15","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802690428"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianhua Chen","raw_affiliation_strings":["Shanghai Key Laboratory of Psychotic Disorders, Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, 200030, People's Republic of China","Shanghai Key Laboratory of Psychotic Disorders, Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Psychotic Disorders, Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, 200030, People's Republic of China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I2802690428"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Psychotic Disorders, Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, People\u2019s Republic of China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I2802690428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101541532","display_name":"Yizhou Xu","orcid":"https://orcid.org/0000-0003-0158-0345"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210114506","display_name":"Ministry of Education","ror":"https://ror.org/01p262204","country_code":"KR","type":"government","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210114506"]}],"countries":["CN","KR"],"is_corresponding":false,"raw_author_name":"Yizhou Xu","raw_affiliation_strings":["Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210114506"]},{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100391562","display_name":"Dong Wang","orcid":"https://orcid.org/0000-0003-4872-4860"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210114506","display_name":"Ministry of Education","ror":"https://ror.org/01p262204","country_code":"KR","type":"government","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210114506"]}],"countries":["CN","KR"],"is_corresponding":false,"raw_author_name":"Dong Wang","raw_affiliation_strings":["Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210114506"]},{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100634700","display_name":"Xiaoqi Li","orcid":"https://orcid.org/0000-0002-4125-5726"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210114506","display_name":"Ministry of Education","ror":"https://ror.org/01p262204","country_code":"KR","type":"government","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210114506"]},{"id":"https://openalex.org/I4210159344","display_name":"Viva Biotech (China)","ror":"https://ror.org/05p50vw42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210159344"]}],"countries":["CN","KR"],"is_corresponding":false,"raw_author_name":"Xiaoqi Li","raw_affiliation_strings":["Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","DYnastyGene Biotech Co. Ltd., Building 25, No.10688 Bei Qing Road, Qingpu District, Shanghai, 201700, People's Republic of China","Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","DYnastyGene Biotech Co. Ltd., Shanghai, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210114506"]},{"raw_affiliation_string":"DYnastyGene Biotech Co. Ltd., Building 25, No.10688 Bei Qing Road, Qingpu District, Shanghai, 201700, People's Republic of China","institution_ids":["https://openalex.org/I4210159344"]},{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"DYnastyGene Biotech Co. Ltd., Shanghai, People\u2019s Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111089828","display_name":"Renliang Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210114506","display_name":"Ministry of Education","ror":"https://ror.org/01p262204","country_code":"KR","type":"government","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210114506"]}],"countries":["CN","KR"],"is_corresponding":false,"raw_author_name":"Renliang Sun","raw_affiliation_strings":["Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210114506"]},{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052730531","display_name":"Mancang Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159344","display_name":"Viva Biotech (China)","ror":"https://ror.org/05p50vw42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210159344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mancang Zhang","raw_affiliation_strings":["DYnastyGene Biotech Co. Ltd., Building 25, No.10688 Bei Qing Road, Qingpu District, Shanghai, 201700, People's Republic of China","DYnastyGene Biotech Co. Ltd., Shanghai, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DYnastyGene Biotech Co. Ltd., Building 25, No.10688 Bei Qing Road, Qingpu District, Shanghai, 201700, People's Republic of China","institution_ids":["https://openalex.org/I4210159344"]},{"raw_affiliation_string":"DYnastyGene Biotech Co. Ltd., Shanghai, People\u2019s Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100446599","display_name":"Zhuo Wang","orcid":"https://orcid.org/0000-0002-9482-4486"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210110997","display_name":"Ministry of Education","ror":"https://ror.org/01xexqx38","country_code":"ME","type":"government","lineage":["https://openalex.org/I4210110997"]}],"countries":["CN","ME"],"is_corresponding":true,"raw_author_name":"Zhuo Wang","raw_affiliation_strings":["Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China. zhuowang@sjtu.edu.cn","Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China. zhuowang@sjtu.edu.cn","institution_ids":["https://openalex.org/I4210110997"]},{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004254273","display_name":"Yongyong Shi","orcid":"https://orcid.org/0000-0003-1710-1505"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210114506","display_name":"Ministry of Education","ror":"https://ror.org/01p262204","country_code":"KR","type":"government","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210114506"]}],"countries":["CN","KR"],"is_corresponding":true,"raw_author_name":"Yongyong Shi","raw_affiliation_strings":["Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China. shiyongyong@gmail.com","Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, 200030, China. shiyongyong@gmail.com","institution_ids":["https://openalex.org/I4210114506"]},{"raw_affiliation_string":"Bio-X Institutes, Key laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004254273","https://openalex.org/A5100446599"],"corresponding_institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210110997","https://openalex.org/I4210114506"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.4831,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.7117583,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"20","issue":"S22","first_page":"713","last_page":"713"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.5907999873161316,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.5907999873161316,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.1826000064611435,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.13130000233650208,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6940113306045532},{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.6708275079727173},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.529539942741394},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5007727146148682},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.4604282081127167},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.4533705711364746},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.45105424523353577},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43780189752578735},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41825202107429504},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3421292304992676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2810862064361572},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20609495043754578},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.19060996174812317},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.13118061423301697},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0958310067653656}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6940113306045532},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.6708275079727173},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.529539942741394},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5007727146148682},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.4604282081127167},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.4533705711364746},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.45105424523353577},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43780189752578735},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41825202107429504},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3421292304992676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2810862064361572},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20609495043754578},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.19060996174812317},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.13118061423301697},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0958310067653656},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-3226-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3226-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3226-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31888441","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31888441","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6652e4639e284dff916a5e59bd244127","is_oa":false,"landing_page_url":"https://doaj.org/article/6652e4639e284dff916a5e59bd244127","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss S22, Pp 1-13 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6936113","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6936113","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3226-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3226-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3226-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.7200000286102295}],"awards":[{"id":"https://openalex.org/G1024903948","display_name":null,"funder_award_id":"17JC1402900,17490712200","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G1474675359","display_name":null,"funder_award_id":"81701321, 31571012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1828425977","display_name":null,"funder_award_id":"973 program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3284321855","display_name":null,"funder_award_id":"81421061","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3565828970","display_name":null,"funder_award_id":"(17JC1402900","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G3634298269","display_name":null,"funder_award_id":"2017YFC0908105","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3741732424","display_name":null,"funder_award_id":"31571012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3979995325","display_name":null,"funder_award_id":"81501154","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G420490682","display_name":null,"funder_award_id":"2017YFC0908105","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G4344742215","display_name":null,"funder_award_id":"13dz2260500","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G4411928347","display_name":null,"funder_award_id":"13dz2260500","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G472161901","display_name":null,"funder_award_id":"17490712200)","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G5160697145","display_name":null,"funder_award_id":"13dz2260500","funder_id":"https://openalex.org/F4320325338","funder_display_name":"Shanghai Hospital Development Center"},{"id":"https://openalex.org/G585442216","display_name":null,"funder_award_id":"2016YFC1306903","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5910208080","display_name":null,"funder_award_id":"2015CB559100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G598336005","display_name":null,"funder_award_id":"2017SHZDZX01","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G6044760167","display_name":null,"funder_award_id":"2017SHZDZX01","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7271263264","display_name":null,"funder_award_id":"2017SHZDZX01","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7484500766","display_name":null,"funder_award_id":"2017YFC0908105","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7785759594","display_name":null,"funder_award_id":"SHDC12016115","funder_id":"https://openalex.org/F4320325338","funder_display_name":"Shanghai Hospital Development Center"},{"id":"https://openalex.org/G7840565354","display_name":null,"funder_award_id":"81701321","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8084082022","display_name":null,"funder_award_id":"13dz2260500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8204268266","display_name":null,"funder_award_id":"81421061","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8327411647","display_name":null,"funder_award_id":"ZK2015B01, 201540114","funder_id":"https://openalex.org/F4320317789","funder_display_name":"Shanghai Municipal Health Commission"},{"id":"https://openalex.org/G8627991261","display_name":null,"funder_award_id":"15XD1502200","funder_id":"https://openalex.org/F4320327516","funder_display_name":"Program of Shanghai Subject Chief Scientist"}],"funders":[{"id":"https://openalex.org/F4320317789","display_name":"Shanghai Municipal Health Commission","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320325338","display_name":"Shanghai Hospital Development Center","ror":"https://ror.org/02zrtve16"},{"id":"https://openalex.org/F4320327516","display_name":"Program of Shanghai Subject Chief Scientist","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320336648","display_name":"National Program for Support of Top-notch Young Professionals","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2998233925.pdf","grobid_xml":"https://content.openalex.org/works/W2998233925.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1485718738","https://openalex.org/W1967239133","https://openalex.org/W2068917703","https://openalex.org/W2087464200","https://openalex.org/W2095680943","https://openalex.org/W2103441770","https://openalex.org/W2117131162","https://openalex.org/W2119180969","https://openalex.org/W2138601221","https://openalex.org/W2146290346","https://openalex.org/W2147733682","https://openalex.org/W2151794156","https://openalex.org/W2155943701","https://openalex.org/W2525902479","https://openalex.org/W2765185461","https://openalex.org/W2780624097","https://openalex.org/W2791837701","https://openalex.org/W2889664156","https://openalex.org/W2895452915","https://openalex.org/W2952870794","https://openalex.org/W3098304617","https://openalex.org/W3102476541","https://openalex.org/W4295830359","https://openalex.org/W4394666350","https://openalex.org/W6600291067"],"related_works":["https://openalex.org/W2158336776","https://openalex.org/W2415856862","https://openalex.org/W2049997041","https://openalex.org/W2885467579","https://openalex.org/W2785281344","https://openalex.org/W3115467191","https://openalex.org/W3197187837","https://openalex.org/W2952870794","https://openalex.org/W3122347852","https://openalex.org/W1976905615"],"abstract_inverted_index":{"BACKGROUND:":[0],"Variant":[1,67],"calling":[2],"and":[3,25,43,45,50,76,103,119,152,165,188,206,217,228],"refinement":[4],"from":[5,97,150],"whole":[6],"genome/exome":[7],"sequencing":[8,24,148,159],"data":[9,149,160,222],"is":[10,31],"a":[11,63,79,108,173],"fundamental":[12],"task":[13],"for":[14,33,66,92,132,141,154,180],"genomics":[15],"studies.":[16],"Due":[17],"to":[18,208],"the":[19,56,101,123,137,146,191,210,229],"limited":[20],"accuracy":[21],"of":[22,58,112,125,139,161],"NGS":[23,221],"variant":[26,37,143,156,198],"callers,":[27],"IGV-based":[28],"manual":[29,59,130],"review":[30],"required":[32],"further":[34],"false":[35,116,211],"positive":[36,117,212],"filtering,":[38],"which":[39,87,184],"costs":[40],"massive":[41],"labor":[42],"time,":[44],"results":[46],"in":[47,122,196,220],"high":[48,93,127],"inter-":[49],"intra-lab":[51],"variability.":[52],"RESULTS:":[53],"To":[54],"overcome":[55],"limitation":[57],"review,":[60,131],"we":[61],"developed":[62],"novel":[64],"approach":[65],"Filter":[68],"by":[69,110,177],"Automated":[70],"Scoring":[71],"based":[72],"on":[73],"Tagged-signature":[74],"(VariFAST),":[75],"also":[77,153,171],"provided":[78],"pipeline":[80,230],"integrating":[81,231],"GATK":[82,233],"Best":[83,234],"Practices":[84,235],"with":[85,129,232],"VariFAST,":[86],"can":[88,202],"be":[89],"easily":[90],"used":[91],"quality":[94],"variants":[95,182],"detection":[96],"raw":[98],"data.":[99],"Using":[100],"bam":[102],"vcf":[104],"files,":[105],"VariFAST":[106,140,170,201,225],"calculates":[107],"v-score":[109],"sum":[111],"weighted":[113],"metrics":[114],"causing":[115],"variations,":[118],"marks":[120],"tags":[121],"manner":[124],"keeping":[126],"consistency":[128],"each":[133],"variant.":[134],"We":[135],"validated":[136],"performance":[138],"germline":[142,181,216],"filtering":[144,157],"using":[145,158],"benchmark":[147],"GIAB,":[151],"somatic":[155,218],"both":[162,215],"malignant":[163],"carcinoma":[164],"benign":[166],"adenomas":[167],"as":[168],"well.":[169],"includes":[172],"predictive":[174],"model":[175],"trained":[176],"XGBOOST":[178],"algorithm":[179],"refinement,":[183],"reveals":[185],"better":[186],"MCC":[187],"AUC":[189],"than":[190],"state-of-the-art":[192],"VQSR,":[193],"especially":[194],"outcompete":[195],"INDEL":[197],"filtering.":[199],"CONCLUSION:":[200],"assist":[203],"researchers":[204],"efficiently":[205],"conveniently":[207],"filter":[209],"variants,":[213],"including":[214],"ones,":[219],"analysis.":[223],"The":[224],"source":[226],"code":[227],"are":[236],"available":[237],"at":[238],"https://github.com/bioxsjtu/VariFAST.":[239]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":3}],"updated_date":"2026-08-02T14:50:37.381335","created_date":"2025-10-10T00:00:00"}
