{"id":"https://openalex.org/W3111949584","doi":"https://doi.org/10.1186/s12859-019-3184-8","title":"Linear space string correction algorithm using the Damerau-Levenshtein distance","display_name":"Linear space string correction algorithm using the Damerau-Levenshtein distance","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3111949584","doi":"https://doi.org/10.1186/s12859-019-3184-8","mag":"3111949584","pmid":"https://pubmed.ncbi.nlm.nih.gov/33297940"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3184-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3184-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3184-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3184-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102022157","display_name":"Chunchun Zhao","orcid":"https://orcid.org/0000-0002-6698-727X"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chunchun Zhao","raw_affiliation_strings":["Department of Computer and Information Science and Engineering, University of Florida, Gainesville, 32611, FL, USA. zhaochunchun@gmail.com","Department of Computer and Information Science and Engineering, University of Florida, Gainesville, 32611, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, 32611, FL, USA. zhaochunchun@gmail.com","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, 32611, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070824596","display_name":"Sartaj Sahni","orcid":"https://orcid.org/0000-0002-8129-1676"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sartaj Sahni","raw_affiliation_strings":["Department of Computer and Information Science and Engineering, University of Florida, Gainesville, 32611, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, 32611, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5102022157"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2744,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.65919171,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"21","issue":"S1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/edit-distance","display_name":"Edit distance","score":0.8656136393547058},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.7086701393127441},{"id":"https://openalex.org/keywords/levenshtein-distance","display_name":"Levenshtein distance","score":0.666147768497467},{"id":"https://openalex.org/keywords/linear-space","display_name":"Linear space","score":0.6184793710708618},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6048922538757324},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.522554337978363},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.49247345328330994},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4784505367279053},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.4756600260734558},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.39051374793052673},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.31619709730148315}],"concepts":[{"id":"https://openalex.org/C44359876","wikidata":"https://www.wikidata.org/wiki/Q5338467","display_name":"Edit distance","level":2,"score":0.8656136393547058},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.7086701393127441},{"id":"https://openalex.org/C2777515626","wikidata":"https://www.wikidata.org/wiki/Q496939","display_name":"Levenshtein distance","level":2,"score":0.666147768497467},{"id":"https://openalex.org/C176370821","wikidata":"https://www.wikidata.org/wiki/Q1826459","display_name":"Linear space","level":2,"score":0.6184793710708618},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6048922538757324},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.522554337978363},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.49247345328330994},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4784505367279053},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.4756600260734558},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.39051374793052673},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.31619709730148315},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-3184-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3184-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3184-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33297940","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33297940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:9fb28f94cb894b81abc80a903555ed71","is_oa":true,"landing_page_url":"https://doaj.org/article/9fb28f94cb894b81abc80a903555ed71","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S1, Pp 1-21 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7724867","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7724867","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3184-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3184-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3184-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3111949584.pdf","grobid_xml":"https://content.openalex.org/works/W3111949584.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W108740571","https://openalex.org/W561833833","https://openalex.org/W1526715104","https://openalex.org/W1599547597","https://openalex.org/W1647671624","https://openalex.org/W1970026646","https://openalex.org/W1989549941","https://openalex.org/W1990071908","https://openalex.org/W2034190452","https://openalex.org/W2039262760","https://openalex.org/W2057900969","https://openalex.org/W2129271949","https://openalex.org/W2165654401","https://openalex.org/W2170085959","https://openalex.org/W2495107680","https://openalex.org/W2508744904","https://openalex.org/W2556418181","https://openalex.org/W2560155428","https://openalex.org/W2620138912","https://openalex.org/W2769372735","https://openalex.org/W2948115951","https://openalex.org/W4246774680"],"related_works":["https://openalex.org/W2461708070","https://openalex.org/W2003932770","https://openalex.org/W1531307672","https://openalex.org/W4362583275","https://openalex.org/W2575897682","https://openalex.org/W4321609555","https://openalex.org/W2844405045","https://openalex.org/W3111949584","https://openalex.org/W2900772149","https://openalex.org/W2769042438"],"abstract_inverted_index":{"Besides":[0],"using":[1],"less":[2],"space":[3],"than":[4],"the":[5,45,61,70],"previously":[6,72],"known":[7,73],"algorithms,significant":[8],"run-time":[9],"improvement":[10],"was":[11],"seen":[12],"for":[13],"our":[14,21,27],"new":[15],"algorithms":[16,30,59],"on":[17],"all":[18,25],"three":[19],"of":[20],"experimental":[22],"platforms.":[23],"On":[24],"platforms,":[26],"linear-space":[28],"cache-efficient":[29],"reduced":[31,60],"run":[32,62],"time":[33,63],"by":[34,64],"as":[35,37],"much":[36],"56.4%":[38],"and":[39,48],"57.4%":[40],"in":[41],"respect":[42],"to":[43,54,66,69],"compute":[44],"DL":[46],"distance":[47],"an":[49],"optimal":[50],"edit":[51],"sequences":[52],"compared":[53,68],"previous":[55],"algorithms.":[56,75],"Our":[57],"multi-core":[58,74],"up":[65],"59.3%":[67],"best":[71]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
