{"id":"https://openalex.org/W2982544799","doi":"https://doi.org/10.1186/s12859-019-3157-y","title":"PPR-SSM: personalized PageRank and semantic similarity measures for entity linking","display_name":"PPR-SSM: personalized PageRank and semantic similarity measures for entity linking","publication_year":2019,"publication_date":"2019-10-29","ids":{"openalex":"https://openalex.org/W2982544799","doi":"https://doi.org/10.1186/s12859-019-3157-y","mag":"2982544799","pmid":"https://pubmed.ncbi.nlm.nih.gov/31664891"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3157-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3157-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3157-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3157-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024583659","display_name":"Andr\u00e9 Lam\u00farias","orcid":"https://orcid.org/0000-0001-7965-6536"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Andre Lamurias","raw_affiliation_strings":["LASIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, 749-016, Portugal. alamurias@lasige.di.fc.ul.pt","LASIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, 749-016, Portugal"],"raw_orcid":"https://orcid.org/0000-0001-7965-6536","affiliations":[{"raw_affiliation_string":"LASIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, 749-016, Portugal. alamurias@lasige.di.fc.ul.pt","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LASIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, 749-016, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081030878","display_name":"Pedro Ruas","orcid":"https://orcid.org/0000-0002-1293-4199"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Pedro Ruas","raw_affiliation_strings":["LASIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, 749-016, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LASIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, 749-016, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014333753","display_name":"Francisco M. Couto","orcid":"https://orcid.org/0000-0003-0627-1496"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Francisco M. Couto","raw_affiliation_strings":["LASIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, 749-016, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LASIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, 749-016, Portugal","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5024583659"],"corresponding_institution_ids":["https://openalex.org/I141596103"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.1962,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.79172381,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"534","last_page":"534"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9064000248908997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9064000248908997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.048900000751018524,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.007699999958276749,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8215481042861938},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6747094988822937},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.5792439579963684},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.5259409546852112},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.507752537727356},{"id":"https://openalex.org/keywords/ambiguity","display_name":"Ambiguity","score":0.5043028593063354},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.49992966651916504},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.4935051202774048},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.4542083144187927},{"id":"https://openalex.org/keywords/pagerank","display_name":"PageRank","score":0.44125068187713623},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30683809518814087}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8215481042861938},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6747094988822937},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.5792439579963684},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.5259409546852112},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.507752537727356},{"id":"https://openalex.org/C2780522230","wikidata":"https://www.wikidata.org/wiki/Q1140419","display_name":"Ambiguity","level":2,"score":0.5043028593063354},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.49992966651916504},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.4935051202774048},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4542083144187927},{"id":"https://openalex.org/C2779172887","wikidata":"https://www.wikidata.org/wiki/Q184316","display_name":"PageRank","level":2,"score":0.44125068187713623},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30683809518814087},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-3157-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3157-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3157-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31664891","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31664891","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:077e66f545fe412ab3fcc63d34c10820","is_oa":true,"landing_page_url":"https://doaj.org/article/077e66f545fe412ab3fcc63d34c10820","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-12 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6819326","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6819326","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3157-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3157-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3157-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4384961418","display_name":null,"funder_award_id":"PTDC/CCI-BIO/28685/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5454278309","display_name":null,"funder_award_id":"/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5935811819","display_name":null,"funder_award_id":"UID/CEC/00408/2019","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W11298561","https://openalex.org/W1172683740","https://openalex.org/W1502957213","https://openalex.org/W1504725289","https://openalex.org/W1511328045","https://openalex.org/W1516184288","https://openalex.org/W1539585011","https://openalex.org/W1541742946","https://openalex.org/W1547612978","https://openalex.org/W1548663377","https://openalex.org/W1550457191","https://openalex.org/W1554540371","https://openalex.org/W1647729745","https://openalex.org/W1935434993","https://openalex.org/W1964189668","https://openalex.org/W2040298461","https://openalex.org/W2051689038","https://openalex.org/W2066636486","https://openalex.org/W2074640468","https://openalex.org/W2096718637","https://openalex.org/W2100935296","https://openalex.org/W2101680936","https://openalex.org/W2119347607","https://openalex.org/W2119737821","https://openalex.org/W2120719430","https://openalex.org/W2128809169","https://openalex.org/W2129113459","https://openalex.org/W2130903762","https://openalex.org/W2140611297","https://openalex.org/W2151048449","https://openalex.org/W2151428465","https://openalex.org/W2154142897","https://openalex.org/W2165306248","https://openalex.org/W2171472464","https://openalex.org/W2243453704","https://openalex.org/W2245248321","https://openalex.org/W2250869925","https://openalex.org/W2295227292","https://openalex.org/W2415021352","https://openalex.org/W2557385283","https://openalex.org/W2610394652","https://openalex.org/W2767470330","https://openalex.org/W2768673657","https://openalex.org/W2774333084","https://openalex.org/W2775160451","https://openalex.org/W2790457751","https://openalex.org/W2792330846","https://openalex.org/W2804784869","https://openalex.org/W2938140497","https://openalex.org/W2950225692","https://openalex.org/W2953332543","https://openalex.org/W4242744113","https://openalex.org/W4256361765","https://openalex.org/W6636975626"],"related_works":["https://openalex.org/W1541691357","https://openalex.org/W2090135255","https://openalex.org/W2168409722","https://openalex.org/W2782437235","https://openalex.org/W2548972888","https://openalex.org/W2026505290","https://openalex.org/W1993715838","https://openalex.org/W2359088421","https://openalex.org/W2328532631","https://openalex.org/W2181629536"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biomedical":[1],"literature":[2,28,62],"concerns":[3],"a":[4,14,50,66,106,122,152,168,179,256,280],"wide":[5],"range":[6],"of":[7,95,102,116,147,154,178,181,187,246,272],"concepts,":[8,183],"requiring":[9],"controlled":[10],"vocabularies":[11],"to":[12,31,63,125,131,150,174,211,216,279],"maintain":[13],"consistent":[15],"terminology":[16],"across":[17],"different":[18],"research":[19],"groups.":[20],"However,":[21],"as":[22],"new":[23],"concepts":[24,64,132,156,198],"are":[25,37],"introduced,":[26],"biomedical":[27,217],"is":[29,49,138,255],"prone":[30],"ambiguity,":[32],"specifically":[33],"in":[34,60,65,105,129,167,238,251],"fields":[35],"that":[36,54,78,231,259,282],"advancing":[38],"more":[39],"rapidly,":[40],"for":[41,157],"example,":[42,70],"drug":[43],"design":[44],"and":[45,83,98,223,226],"development.":[46],"Entity":[47],"linking":[48,57,72,236,270],"text":[51],"mining":[52],"task":[53],"aims":[55],"at":[56],"entities":[58,104,127,215],"mentioned":[59,159],"the":[61,80,92,99,114,117,145,148,158,164,176,185,194,247,268],"knowledge":[67,165],"base.":[68],"For":[69],"entity":[71,97,188,235,269],"can":[73,171,208],"help":[74],"finding":[75],"all":[76,103],"documents":[77,130],"mention":[79],"same":[81],"concept":[82],"improve":[84],"relation":[85],"extraction":[86],"methods.":[87],"Existing":[88],"approaches":[89],"focus":[90],"on":[91,140],"local":[93],"similarity":[94,201],"each":[96],"global":[100],"coherence":[101,177],"document,":[107],"but":[108],"do":[109],"not":[110,261,284],"take":[111],"into":[112],"account":[113],"semantics":[115],"domain.":[118],"RESULTS:":[119],"We":[120,161,204,229],"propose":[121],"method,":[123],"PPR-SSM,":[124],"link":[126,213],"found":[128],"from":[133],"domain-specific":[134,169],"ontologies.":[135,252],"Our":[136,265],"method":[137,258,266,281],"based":[139],"Personalized":[141],"PageRank":[142],"(PPR),":[143],"using":[144,199],"relations":[146],"ontology":[149,170],"generate":[151],"graph":[153],"candidate":[155,182,197],"entities.":[160],"demonstrate":[162],"how":[163,206],"encoded":[166],"be":[172,209],"used":[173,210],"calculate":[175],"set":[180],"improving":[184],"accuracy":[186,271],"linking.":[189],"Furthermore,":[190],"we":[191],"explore":[192],"weighting":[193],"edges":[195],"between":[196],"semantic":[200,248],"measures":[202],"(SSM).":[203],"show":[205],"PPR-SSM":[207,232,254],"effectively":[212],"named":[214],"ontologies,":[218],"namely":[219],"chemical":[220,273],"compounds,":[221],"phenotypes,":[222],"gene-product":[224],"localization":[225],"processes.":[227],"CONCLUSIONS:":[228],"demonstrated":[230],"outperforms":[233],"state-of-the-art":[234],"methods":[237],"four":[239],"distinct":[240],"gold":[241],"standards,":[242],"by":[243,275],"taking":[244],"advantage":[245],"information":[249],"contained":[250],"Moreover,":[253],"graph-based":[257],"does":[260,283],"require":[262],"training":[263],"data.":[264],"improved":[267],"compounds":[274],"0.1385":[276],"when":[277],"compared":[278],"use":[285],"SSMs.":[286]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
