{"id":"https://openalex.org/W2987887160","doi":"https://doi.org/10.1186/s12859-019-3147-0","title":"Annot: a Django-based sample, reagent, and experiment metadata tracking system","display_name":"Annot: a Django-based sample, reagent, and experiment metadata tracking system","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W2987887160","doi":"https://doi.org/10.1186/s12859-019-3147-0","mag":"2987887160","pmid":"https://pubmed.ncbi.nlm.nih.gov/31675914"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3147-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3147-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3147-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3147-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007033122","display_name":"Elmar Bucher","orcid":"https://orcid.org/0000-0002-2929-2460"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Elmar Bucher","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023262910","display_name":"Cheryl Claunch","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cheryl J. Claunch","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055525569","display_name":"Derrick Hee","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Derrick Hee","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084892113","display_name":"Rebecca Smith","orcid":"https://orcid.org/0000-0002-3087-5639"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rebecca L. Smith","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048433402","display_name":"Kaylyn L. Devlin","orcid":"https://orcid.org/0000-0001-5842-0591"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kaylyn Devlin","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042879883","display_name":"Wallace Thompson","orcid":"https://orcid.org/0000-0002-5179-6307"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wallace Thompson","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038157510","display_name":"James E. Korkola","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James E. Korkola","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084824340","display_name":"Laura M. Heiser","orcid":"https://orcid.org/0000-0003-3330-0950"},"institutions":[{"id":"https://openalex.org/I4210143859","display_name":"Oregon Health and Science University Hospital","ror":"https://ror.org/0488bnd65","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210143859"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Laura M. Heiser","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA. heiserl@ohsu.edu","Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA"],"raw_orcid":"https://orcid.org/0000-0003-3330-0950","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA. heiserl@ohsu.edu","institution_ids":["https://openalex.org/I4210143859"]},{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, OHSU, Portland, OR, 97201, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5084824340"],"corresponding_institution_ids":["https://openalex.org/I4210143859"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.171,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.53818199,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"20","issue":"1","first_page":"542","last_page":"542"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7045999765396118,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7045999765396118,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.09629999846220016,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.05700000002980232,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7815882563591003},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7659614086151123},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.7268065810203552},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.5342981219291687},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4974713623523712},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.44120529294013977},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.4383545517921448},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.422860711812973},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.4104557931423187},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4096928536891937},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.25730007886886597},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2170061469078064},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11922228336334229}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7815882563591003},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7659614086151123},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.7268065810203552},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.5342981219291687},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4974713623523712},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.44120529294013977},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.4383545517921448},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.422860711812973},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.4104557931423187},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4096928536891937},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.25730007886886597},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2170061469078064},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11922228336334229},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007202","descriptor_name":"Indicators and Reagents","qualifier_ui":"Q000600","qualifier_name":"supply & distribution","is_major_topic":false},{"descriptor_ui":"D007202","descriptor_name":"Indicators and Reagents","qualifier_ui":"Q000600","qualifier_name":"supply & distribution","is_major_topic":false},{"descriptor_ui":"D007202","descriptor_name":"Indicators and Reagents","qualifier_ui":"Q000600","qualifier_name":"supply & distribution","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-3147-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3147-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3147-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31675914","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31675914","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:cdcb85309cc34645ae28035af8c9253b","is_oa":true,"landing_page_url":"https://doaj.org/article/cdcb85309cc34645ae28035af8c9253b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-6 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5800014","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6824123","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3147-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3147-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3147-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2295909439","display_name":null,"funder_award_id":"U54 HG008100","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2387229158","display_name":null,"funder_award_id":"U54HG008100","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4277206828","display_name":null,"funder_award_id":"U54 CA209988","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G956508459","display_name":null,"funder_award_id":"1U54CA209988","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2987887160.pdf","grobid_xml":"https://content.openalex.org/works/W2987887160.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W2043398720","https://openalex.org/W2046607138","https://openalex.org/W2050554833","https://openalex.org/W2096340575","https://openalex.org/W2099467659","https://openalex.org/W2103419012","https://openalex.org/W2113142309","https://openalex.org/W2119676748","https://openalex.org/W2123152121","https://openalex.org/W2130430745","https://openalex.org/W2141297584","https://openalex.org/W2158485828","https://openalex.org/W2168166653","https://openalex.org/W2171804472","https://openalex.org/W2302501749","https://openalex.org/W2768977980","https://openalex.org/W2773787581","https://openalex.org/W2793638865","https://openalex.org/W2795989238","https://openalex.org/W2946509261","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1552553528","https://openalex.org/W2183628870","https://openalex.org/W3023161639","https://openalex.org/W2008531296","https://openalex.org/W2782431616","https://openalex.org/W2394393789","https://openalex.org/W2374379029","https://openalex.org/W1503116306","https://openalex.org/W4299935056","https://openalex.org/W2768577102"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"biological":[2,100],"experiments,":[3],"comprehensive":[4],"experimental":[5,173],"metadata":[6,94,193,219],"tracking":[7,220],"-":[8,22],"which":[9,90,228],"comprises":[10],"experiment,":[11],"reagent,":[12],"and":[13,68,76,142,150,157,172,191,197,199,211],"protocol":[14,77],"annotation":[15,70],"with":[16,232],"controlled":[17,64],"vocabulary":[18,65],"from":[19],"established":[20,176],"ontologies":[21],"remains":[23],"a":[24,45,52,85,165,187,233],"challenge,":[25],"especially":[26],"when":[27],"the":[28,39,61,144,223],"experiment":[29],"involves":[30],"multiple":[31,179],"laboratory":[32,180],"scientists":[33,181],"who":[34],"execute":[35],"different":[36,206],"steps":[37],"of":[38,63,81,98,216,225],"protocol.":[40],"Here":[41],"we":[42,229],"describe":[43],"Annot,":[44],"novel":[46],"web":[47,146],"application":[48],"designed":[49],"to":[50,168,189,218],"provide":[51],"flexible":[53],"solution":[54,167,217],"for":[55,66,95,175,194],"this":[56,105],"task.":[57],"RESULTS:":[58],"Annot":[59,137,163],"enforces":[60],"use":[62],"sample":[67],"reagent":[69],"while":[71],"enabling":[72],"robust":[73,166],"investigation,":[74],"study,":[75],"tracking.":[78],"The":[79],"cornerstone":[80],"Annot's":[82],"implementation":[83],"is":[84,138,153],"json":[86,106],"syntax-compatible":[87],"file":[88,107],"format,":[89],"can":[91,109,120,208,221],"capture":[92],"detailed":[93],"all":[96,159],"aspects":[97],"complex":[99],"experiments.":[101],"Data":[102],"stored":[103],"in":[104,140,205],"format":[108],"easily":[110],"be":[111,121,209],"ported":[112],"into":[113,123],"spreadsheet":[114],"or":[115,128],"data":[116,131,195,203],"frame":[117],"files":[118],"that":[119,202],"loaded":[122],"R":[124],"(":[125,134],"https://www.r-project.org/":[126],")":[127],"Pandas,":[129],"Python's":[130],"analysis":[132,196],"library":[133],"https://pandas.pydata.org/":[135],").":[136],"implemented":[139],"Python3":[141],"utilizes":[143],"Django":[145],"framework,":[147],"Postgresql,":[148],"Nginx,":[149],"Debian.":[151],"It":[152],"deployed":[154],"via":[155],"Docker":[156],"supports":[158],"major":[160],"browsers.":[161],"CONCLUSIONS:":[162],"offers":[164],"annotate":[169],"samples,":[170],"reagents,":[171],"protocols":[174],"assays":[177],"where":[178],"are":[182],"involved.":[183],"Further,":[184],"it":[185],"provides":[186],"framework":[188],"store":[190],"retrieve":[192],"integration,":[198],"therefore":[200],"ensures":[201],"generated":[204],"experiments":[207],"integrated":[210],"jointly":[212],"analyzed.":[213],"This":[214],"type":[215],"enhance":[222],"utility":[224],"large-scale":[226,234],"datasets,":[227],"demonstrate":[230],"here":[231],"microenvironment":[235],"microarray":[236],"study.":[237]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
