{"id":"https://openalex.org/W2982706470","doi":"https://doi.org/10.1186/s12859-019-3114-9","title":"SLR: a scaffolding algorithm based on long reads and contig classification","display_name":"SLR: a scaffolding algorithm based on long reads and contig classification","publication_year":2019,"publication_date":"2019-10-30","ids":{"openalex":"https://openalex.org/W2982706470","doi":"https://doi.org/10.1186/s12859-019-3114-9","mag":"2982706470","pmid":"https://pubmed.ncbi.nlm.nih.gov/31666010"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3114-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3114-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3114-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3114-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100422484","display_name":"Junwei Luo","orcid":"https://orcid.org/0000-0001-6841-9893"},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Junwei Luo","raw_affiliation_strings":["College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China. luojunwei@hpu.edu.cn","College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China. luojunwei@hpu.edu.cn","institution_ids":["https://openalex.org/I4210166499"]},{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024836640","display_name":"Mengna Lyu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengna Lyu","raw_affiliation_strings":["College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030122057","display_name":"Ranran Chen","orcid":"https://orcid.org/0000-0002-6743-9216"},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ranran Chen","raw_affiliation_strings":["College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100330128","display_name":"Xiaohong Zhang","orcid":"https://orcid.org/0000-0003-4720-4775"},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaohong Zhang","raw_affiliation_strings":["College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, 454000, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012174743","display_name":"Huimin Luo","orcid":"https://orcid.org/0000-0002-5066-5372"},"institutions":[{"id":"https://openalex.org/I173899330","display_name":"Henan University","ror":"https://ror.org/003xyzq10","country_code":"CN","type":"education","lineage":["https://openalex.org/I173899330"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huimin Luo","raw_affiliation_strings":["School of Computer and Information Engineering, Henan University, Kaifeng, 475001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Information Engineering, Henan University, Kaifeng, 475001, China","institution_ids":["https://openalex.org/I173899330"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101773794","display_name":"Chaokun Yan","orcid":"https://orcid.org/0000-0002-6246-7242"},"institutions":[{"id":"https://openalex.org/I173899330","display_name":"Henan University","ror":"https://ror.org/003xyzq10","country_code":"CN","type":"education","lineage":["https://openalex.org/I173899330"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaokun Yan","raw_affiliation_strings":["School of Computer and Information Engineering, Henan University, Kaifeng, 475001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Information Engineering, Henan University, Kaifeng, 475001, China","institution_ids":["https://openalex.org/I173899330"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100422484"],"corresponding_institution_ids":["https://openalex.org/I4210166499"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.7368,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.90527542,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"20","issue":"1","first_page":"539","last_page":"539"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.4672999978065491,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.4672999978065491,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.36480000615119934,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.04490000009536743,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.9637223482131958},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.664008378982544},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.61622154712677},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6126256585121155},{"id":"https://openalex.org/keywords/scaffold","display_name":"Scaffold","score":0.5903202891349792},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4969048798084259},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38282305002212524},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3295891284942627},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23098447918891907},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18655383586883545},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16740745306015015},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09756883978843689}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.9637223482131958},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.664008378982544},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.61622154712677},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6126256585121155},{"id":"https://openalex.org/C89429830","wikidata":"https://www.wikidata.org/wiki/Q735710","display_name":"Scaffold","level":2,"score":0.5903202891349792},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4969048798084259},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38282305002212524},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3295891284942627},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23098447918891907},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18655383586883545},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16740745306015015},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09756883978843689},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-3114-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3114-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3114-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31666010","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31666010","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c87677d0cfa9439b8269ce31a3ef1f16","is_oa":true,"landing_page_url":"https://doaj.org/article/c87677d0cfa9439b8269ce31a3ef1f16","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-11 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5796422","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6820941","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3114-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3114-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3114-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.7400000095367432}],"awards":[{"id":"https://openalex.org/G1187543282","display_name":null,"funder_award_id":"61772557","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4178204042","display_name":null,"funder_award_id":"19IRTSTHN012","funder_id":"https://openalex.org/F4320322878","funder_display_name":"Henan University"},{"id":"https://openalex.org/G4466869695","display_name":null,"funder_award_id":"No.61772557","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4890233407","display_name":null,"funder_award_id":"61602156","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5152608506","display_name":null,"funder_award_id":"61802113","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G620702340","display_name":null,"funder_award_id":"184100510009","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6667854063","display_name":null,"funder_award_id":"192102210118","funder_id":"https://openalex.org/F4320327051","funder_display_name":"Science and Technology Department of Henan Province"},{"id":"https://openalex.org/G78415896","display_name":"\u57fa\u4e8e\u957f\u77ed\u8bfb\u6570\u7ed3\u5408\u7684\u7ed3\u6784\u53d8\u5f02\u68c0\u6d4b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61972134","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8208698404","display_name":null,"funder_award_id":"61433012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321954","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885"},{"id":"https://openalex.org/F4320322878","display_name":"Henan University","ror":"https://ror.org/003xyzq10"},{"id":"https://openalex.org/F4320327051","display_name":"Science and Technology Department of Henan Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2982706470.pdf","grobid_xml":"https://content.openalex.org/works/W2982706470.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1510244790","https://openalex.org/W1975398519","https://openalex.org/W2008826985","https://openalex.org/W2076163156","https://openalex.org/W2095680943","https://openalex.org/W2107282968","https://openalex.org/W2107772251","https://openalex.org/W2110145781","https://openalex.org/W2124827052","https://openalex.org/W2129744420","https://openalex.org/W2131682733","https://openalex.org/W2131813051","https://openalex.org/W2137759177","https://openalex.org/W2142027180","https://openalex.org/W2147841875","https://openalex.org/W2165795500","https://openalex.org/W2167757586","https://openalex.org/W2171475724","https://openalex.org/W2178309410","https://openalex.org/W2180318265","https://openalex.org/W2189047836","https://openalex.org/W2428569935","https://openalex.org/W2520464109","https://openalex.org/W2554441009","https://openalex.org/W2767132092","https://openalex.org/W2772782734","https://openalex.org/W2794879929","https://openalex.org/W2905576637","https://openalex.org/W2906461738","https://openalex.org/W2950682063","https://openalex.org/W2952474440","https://openalex.org/W2953311464"],"related_works":["https://openalex.org/W2020006618","https://openalex.org/W2952788979","https://openalex.org/W3167837387","https://openalex.org/W2949198880","https://openalex.org/W2763726643","https://openalex.org/W1519765314","https://openalex.org/W3124129973","https://openalex.org/W4381279187","https://openalex.org/W3005683565","https://openalex.org/W4387503895"],"abstract_inverted_index":{"BACKGROUND:":[0],"Scaffolding":[1],"is":[2,211,223],"an":[3],"important":[4],"step":[5],"in":[6,21,72,200],"genome":[7,240],"assembly":[8],"that":[9,194,233],"orders":[10],"and":[11,59,114,125,134,164,186,204],"orients":[12],"the":[13,33,46,97,119,129,139,157,161,166,237],"contigs":[14,22,130,133,136,149,159,227],"produced":[15],"by":[16,53,177],"assemblers.":[17],"However,":[18],"repetitive":[19,36,70,142],"regions":[20,37,71],"usually":[23],"prevent":[24],"scaffolding":[25,77,86,108,175],"from":[26],"producing":[27],"accurate":[28],"results.":[29],"How":[30],"to":[31,65,92,150,172,225],"solve":[32],"problem":[34,140],"of":[35,43,96,99,122,141,202,209,239],"has":[38],"received":[39],"a":[40,89,106],"great":[41],"deal":[42],"attention.":[44],"In":[45,216],"past":[47],"few":[48],"years,":[49],"long":[50,81,100,112,123,179,229],"reads":[51,82,113,124],"sequenced":[52,182],"third-generation":[54],"sequencing":[55,69],"technologies":[56],"(Pacific":[57],"Biosciences":[58,185],"Oxford":[60,187],"Nanopore)":[61],"have":[62,83],"been":[63,84],"demonstrated":[64],"be":[66],"useful":[67],"for":[68,137],"genomes.":[73],"Although":[74],"some":[75],"stand-alone":[76],"algorithms":[78],"based":[79,110],"on":[80,111],"presented,":[85],"still":[87],"requires":[88],"new":[90,107],"strategy":[91],"take":[93],"full":[94],"advantage":[95],"characteristics":[98],"reads.":[101,230],"RESULTS:":[102],"Here,":[103],"we":[104,219],"present":[105],"algorithm":[109],"contig":[115],"classification":[116],"(SLR).":[117],"Through":[118],"alignment":[120],"information":[121],"contigs,":[126],"SLR":[127,145,155,171,195,210,234],"classifies":[128],"into":[131,160],"unique":[132,148],"ambiguous":[135,158],"addressing":[138],"regions.":[143],"Next,":[144],"uses":[146],"only":[147],"produce":[151,197],"draft":[152,162],"scaffolds.":[153,168],"Then,":[154],"inserts":[156],"scaffolds":[163],"produces":[165],"final":[167],"We":[169,231],"compare":[170],"three":[173],"popular":[174],"tools":[176],"using":[178,228],"read":[180],"datasets":[181],"with":[183],"Pacific":[184],"Nanopore":[188],"technologies.":[189],"The":[190,206],"experimental":[191],"results":[192,199],"show":[193],"can":[196,235],"better":[198],"terms":[201],"accuracy":[203],"completeness.":[205],"open-source":[207],"code":[208],"available":[212],"at":[213],"https://github.com/luojunwei/SLR.":[214],"CONCLUSION:":[215],"this":[217],"paper,":[218],"describes":[220],"SLR,":[221],"which":[222],"designed":[224],"scaffold":[226],"conclude":[232],"improve":[236],"completeness":[238],"assembly.":[241]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":4}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}