{"id":"https://openalex.org/W2991604874","doi":"https://doi.org/10.1186/s12859-019-3085-x","title":"Virtual Grid Engine: a simulated grid engine environment for large-scale supercomputers","display_name":"Virtual Grid Engine: a simulated grid engine environment for large-scale supercomputers","publication_year":2019,"publication_date":"2019-12-01","ids":{"openalex":"https://openalex.org/W2991604874","doi":"https://doi.org/10.1186/s12859-019-3085-x","mag":"2991604874","pmid":"https://pubmed.ncbi.nlm.nih.gov/31787090"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3085-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3085-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3085-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3085-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101469434","display_name":"Satoshi Ito","orcid":"https://orcid.org/0000-0002-8464-7535"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Satoshi Ito","raw_affiliation_strings":["The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan. sito@hgc.jp","The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan. sito@hgc.jp","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041320492","display_name":"Masaaki Yadome","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masaaki Yadome","raw_affiliation_strings":["The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069973222","display_name":"Tatsuo Nishiki","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuo Nishiki","raw_affiliation_strings":["Frontier Computing Center, Fujitsu Limited, Higashishinbashi1-5-2, Minato-ku, Tokyo, 105-7123, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Frontier Computing Center, Fujitsu Limited, Higashishinbashi1-5-2, Minato-ku, Tokyo, 105-7123, Japan","institution_ids":["https://openalex.org/I2252096349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013754136","display_name":"Shigeru Ishiduki","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shigeru Ishiduki","raw_affiliation_strings":["Frontier Computing Center, Fujitsu Limited, Higashishinbashi1-5-2, Minato-ku, Tokyo, 105-7123, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Frontier Computing Center, Fujitsu Limited, Higashishinbashi1-5-2, Minato-ku, Tokyo, 105-7123, Japan","institution_ids":["https://openalex.org/I2252096349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000901474","display_name":"Hikaru Inoue","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hikaru Inoue","raw_affiliation_strings":["Frontier Computing Center, Fujitsu Limited, Higashishinbashi1-5-2, Minato-ku, Tokyo, 105-7123, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Frontier Computing Center, Fujitsu Limited, Higashishinbashi1-5-2, Minato-ku, Tokyo, 105-7123, Japan","institution_ids":["https://openalex.org/I2252096349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078146127","display_name":"Rui Yamaguchi","orcid":"https://orcid.org/0000-0003-1224-227X"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Rui Yamaguchi","raw_affiliation_strings":["The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088167618","display_name":"Satoru Miyano","orcid":"https://orcid.org/0000-0002-1753-6616"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Satoru Miyano","raw_affiliation_strings":["The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Medical Science, The University of Tokyo, Shirokanedai 4-6-1, Minato-ku, Tokyo, 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101469434"],"corresponding_institution_ids":["https://openalex.org/I74801974"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.20488532,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":"S16","first_page":"591","last_page":"591"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.7874000072479248,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.7874000072479248,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.05999999865889549,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.027000000700354576,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8270456790924072},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6354018449783325},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.6230059862136841},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.5697916150093079},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.5394547581672668},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.5388969779014587},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5040165781974792},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4964643120765686},{"id":"https://openalex.org/keywords/asynchronous-communication","display_name":"Asynchronous communication","score":0.4584616422653198},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.44818851351737976},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3785918951034546},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.09218412637710571}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8270456790924072},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6354018449783325},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.6230059862136841},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.5697916150093079},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.5394547581672668},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.5388969779014587},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5040165781974792},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4964643120765686},{"id":"https://openalex.org/C151319957","wikidata":"https://www.wikidata.org/wiki/Q752739","display_name":"Asynchronous communication","level":2,"score":0.4584616422653198},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.44818851351737976},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3785918951034546},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.09218412637710571},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-3085-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3085-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3085-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31787090","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31787090","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f7b921edb3e44669a8dc94b0fc3d96f1","is_oa":false,"landing_page_url":"https://doaj.org/article/f7b921edb3e44669a8dc94b0fc3d96f1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss S16, Pp 1-10 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6886159","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6886159","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3085-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3085-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3085-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6600000262260437,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1792684991","display_name":null,"funder_award_id":"hp180198","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G3023731684","display_name":null,"funder_award_id":"hp170227","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G313148667","display_name":null,"funder_award_id":"15H05912","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4126024307","display_name":null,"funder_award_id":"hp160219","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G8070359957","display_name":null,"funder_award_id":"hp190158","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320322832","display_name":"University of Tokyo","ror":"https://ror.org/057zh3y96"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320336716","display_name":"Institute of Medical Science, University of Tokyo","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2991604874.pdf","grobid_xml":"https://content.openalex.org/works/W2991604874.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W153837530","https://openalex.org/W1986818660","https://openalex.org/W1995343013","https://openalex.org/W2001032894","https://openalex.org/W2059919683","https://openalex.org/W2072637364","https://openalex.org/W2101305463","https://openalex.org/W2103228484","https://openalex.org/W2103441770","https://openalex.org/W2185963164","https://openalex.org/W2210668726","https://openalex.org/W2230548884","https://openalex.org/W2269415044","https://openalex.org/W2293403661","https://openalex.org/W2752519587","https://openalex.org/W2791065940"],"related_works":["https://openalex.org/W2384867379","https://openalex.org/W2329539859","https://openalex.org/W3191490922","https://openalex.org/W2227905990","https://openalex.org/W2765823764","https://openalex.org/W3214280620","https://openalex.org/W2794038527","https://openalex.org/W2151092287","https://openalex.org/W2523801036","https://openalex.org/W2073684863"],"abstract_inverted_index":{"BACKGROUND:":[0],"Supercomputers":[1],"have":[2],"become":[3],"indispensable":[4],"infrastructures":[5],"in":[6,21,29,60,130,160,205],"science":[7],"and":[8,111,141,157,185,190,201],"industries.":[9],"In":[10],"particular,":[11],"most":[12],"state-of-the-art":[13],"scientific":[14],"results":[15,99],"utilize":[16],"massively":[17,57],"parallel":[18,41,58],"supercomputers":[19,59],"ranked":[20],"TOP500.":[22],"However,":[23],"their":[24,76],"use":[25,55],"is":[26,47],"still":[27],"limited":[28],"the":[30,35,39,54,88,102,105,121,131,139,199],"bioinformatics":[31,132],"field":[32],"due":[33],"to":[34,73,86,91,94],"fundamental":[36],"fact":[37],"that":[38,101,166],"asynchronous":[40],"processing":[42],"service":[43],"of":[44,56,104,117,144,175],"Grid":[45,67],"Engine":[46],"not":[48],"provided":[49],"on":[50,120],"them.":[51],"To":[52],"encourage":[53],"bioinformatics,":[61],"we":[62],"developed":[63],"middleware":[64],"called":[65],"Virtual":[66],"Engine,":[68],"which":[69],"enables":[70],"software":[71,113,196],"pipelines":[72],"automatically":[74],"perform":[75],"tasks":[77],"as":[78],"MPI":[79],"programs.":[80],"RESULT:":[81],"We":[82,124,164,187],"conducted":[83],"basic":[84],"tests":[85],"check":[87],"time":[89],"required":[90],"assign":[92],"jobs":[93,118],"workers":[95],"by":[96],"VGE.":[97],"The":[98],"showed":[100],"overhead":[103],"employed":[106],"algorithm":[107],"was":[108],"246":[109],"microseconds":[110],"our":[112],"can":[114],"manage":[115],"thousands":[116],"smoothly":[119],"K":[122],"computer.":[123],"also":[125],"tried":[126],"a":[127,206],"practical":[128],"test":[129,135],"field.":[133],"This":[134],"included":[136],"two":[137],"tasks,":[138],"split":[140],"BWA":[142],"alignment":[143],"input":[145],"FASTQ":[146],"data.":[147],"25,055":[148],"nodes":[149],"(2,000,440":[150],"cores)":[151],"were":[152,168],"used":[153],"for":[154,172],"this":[155,173,195],"calculation":[156],"accomplished":[158],"it":[159],"three":[161],"hours.":[162],"CONCLUSION:":[163],"considered":[165],"there":[167],"four":[169],"important":[170],"requirements":[171,200],"kind":[174],"software,":[176],"non-privilege":[177],"server":[178],"program,":[179],"multiple":[180],"job":[181],"handling,":[182],"dependency":[183],"control,":[184],"usability.":[186],"carefully":[188],"designed":[189],"checked":[191],"all":[192,198],"requirements.":[193],"And":[194],"fulfilled":[197],"achieved":[202],"good":[203],"performance":[204],"large":[207],"scale":[208],"analysis.":[209]},"counts_by_year":[],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
