{"id":"https://openalex.org/W2977580499","doi":"https://doi.org/10.1186/s12859-019-3068-y","title":"A machine learning-based service for estimating quality of genomes using PATRIC","display_name":"A machine learning-based service for estimating quality of genomes using PATRIC","publication_year":2019,"publication_date":"2019-10-03","ids":{"openalex":"https://openalex.org/W2977580499","doi":"https://doi.org/10.1186/s12859-019-3068-y","mag":"2977580499","pmid":"https://pubmed.ncbi.nlm.nih.gov/31581946"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3068-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3068-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3068-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3068-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026370684","display_name":"Bruce Parrello","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bruce Parrello","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA","University of Chicago, Chicago, 60637, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA","institution_ids":[]},{"raw_affiliation_string":"University of Chicago, Chicago, 60637, IL, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000388637","display_name":"Rory Butler","orcid":"https://orcid.org/0000-0003-1667-1709"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rory Butler","raw_affiliation_strings":["Computing, Environment, and Life Sciences Directorate, Argonne National Laboratory, 4200 S. Cass Avenue, Lemont, 60439, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing, Environment, and Life Sciences Directorate, Argonne National Laboratory, 4200 S. Cass Avenue, Lemont, 60439, IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069825511","display_name":"Philippe Chlenski","orcid":"https://orcid.org/0000-0002-2951-4385"},"institutions":[{"id":"https://openalex.org/I4210124484","display_name":"Directorate-General for Interpretation","ror":"https://ror.org/03728bb41","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210124484"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Philippe Chlenski","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA. pchlenski@gmail.com","Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA"],"raw_orcid":"https://orcid.org/0000-0002-2951-4385","affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA. pchlenski@gmail.com","institution_ids":["https://openalex.org/I4210124484"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015210172","display_name":"Robert Olson","orcid":"https://orcid.org/0000-0001-9751-4734"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Olson","raw_affiliation_strings":["Computing, Environment, and Life Sciences Directorate, Argonne National Laboratory, 4200 S. Cass Avenue, Lemont, 60439, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing, Environment, and Life Sciences Directorate, Argonne National Laboratory, 4200 S. Cass Avenue, Lemont, 60439, IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073549627","display_name":"Jamie Overbeek","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jamie Overbeek","raw_affiliation_strings":["Computing, Environment, and Life Sciences Directorate, Argonne National Laboratory, 4200 S. Cass Avenue, Lemont, 60439, IL, USA","Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing, Environment, and Life Sciences Directorate, Argonne National Laboratory, 4200 S. Cass Avenue, Lemont, 60439, IL, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066616906","display_name":"Gordon D. Pusch","orcid":"https://orcid.org/0000-0003-1471-0401"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gordon D. Pusch","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036781580","display_name":"Veronika Vonstein","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Veronika Vonstein","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085138988","display_name":"Ross Overbeek","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ross Overbeek","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA","University of Chicago, Chicago, 60637, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA","institution_ids":[]},{"raw_affiliation_string":"University of Chicago, Chicago, 60637, IL, USA","institution_ids":["https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5069825511"],"corresponding_institution_ids":["https://openalex.org/I4210124484"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.9057,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.86629866,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"486","last_page":"486"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8747000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8747000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.053599998354911804,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.016699999570846558,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7401230335235596},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6993727087974548},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6235374212265015},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6228664517402649},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.5386767983436584},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49274423718452454},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36597591638565063},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34794119000434875},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33501744270324707},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16903018951416016},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15850985050201416}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7401230335235596},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6993727087974548},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6235374212265015},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6228664517402649},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.5386767983436584},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49274423718452454},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36597591638565063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34794119000434875},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33501744270324707},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16903018951416016},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15850985050201416}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-019-3068-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3068-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3068-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31581946","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31581946","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:osti.gov:1579345","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1579345","pdf_url":"https://www.osti.gov/servlets/purl/1579345","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:a6f264edc5cb4588b433dd56c7d93fdc","is_oa":false,"landing_page_url":"https://doaj.org/article/a6f264edc5cb4588b433dd56c7d93fdc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-9 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6775668","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6775668","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3068-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3068-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3068-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G1751644051","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2777053550","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5777038625","display_name":null,"funder_award_id":"HHSN272201400027C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6699942780","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6848031779","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6918803902","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7954425250","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8143874970","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8500532866","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G8701208877","display_name":null,"funder_award_id":"HHSN272201400027C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2977580499.pdf","grobid_xml":"https://content.openalex.org/works/W2977580499.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1584790813","https://openalex.org/W1958058086","https://openalex.org/W2063756105","https://openalex.org/W2106197985","https://openalex.org/W2112364185","https://openalex.org/W2114034054","https://openalex.org/W2142428670","https://openalex.org/W2155628349","https://openalex.org/W2559133556","https://openalex.org/W2910615673","https://openalex.org/W3083083886","https://openalex.org/W4214490056"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W3198631238","https://openalex.org/W4388282505","https://openalex.org/W2361861616"],"abstract_inverted_index":{"BACKGROUND:":[0],"Recent":[1],"advances":[2],"in":[3,120,123],"high-volume":[4],"sequencing":[5],"technology":[6,36],"and":[7,17,33,88,101,114,122,132,139],"mining":[8],"of":[9,25,39,48,81,90,98,105,127,141],"genomes":[10,42,119],"from":[11,43],"metagenomic":[12,35,128],"samples":[13],"call":[14],"for":[15,117],"rapid":[16,136],"reliable":[18],"genome":[19],"quality":[20,58,137],"evaluation.":[21],"The":[22],"current":[23,34],"release":[24],"the":[26,62,82,96,102,106,135],"PATRIC":[27,63,121],"database":[28],"contains":[29],"over":[30],"220,000":[31],"genomes,":[32],"supports":[37],"assemblies":[38],"many":[40],"draft-quality":[41],"a":[44,79,124],"single":[45],"sample,":[46],"most":[47],"which":[49],"will":[50],"be":[51],"novel.":[52],"DESCRIPTION:":[53],"We":[54],"have":[55],"added":[56],"two":[57],"assessment":[59],"tools":[60,100],"to":[61,71,85],"annotation":[64,74],"pipeline.":[65],"EvalCon":[66,133],"uses":[67],"supervised":[68],"machine":[69],"learning":[70],"calculate":[72],"an":[73,91],"consistency":[75,107,115],"score.":[76,108],"EvalG":[77,131],"implements":[78],"variant":[80],"CheckM":[83],"algorithm":[84],"estimate":[86],"contamination":[87],"completeness":[89],"annotated":[92],"genome.We":[93],"report":[94],"on":[95],"performance":[97],"these":[99],"potential":[103],"utility":[104],"Additionally,":[109],"we":[110],"provide":[111],"contamination,":[112],"completeness,":[113],"measures":[116],"all":[118],"recent":[125],"set":[126],"assemblies.":[129],"CONCLUSION:":[130],"facilitate":[134],"control":[138],"exploration":[140],"PATRIC-annotated":[142],"draft":[143],"genomes.":[144]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3}],"updated_date":"2026-07-14T08:27:34.040176","created_date":"2025-10-10T00:00:00"}