{"id":"https://openalex.org/W2996284486","doi":"https://doi.org/10.1186/s12859-019-3044-6","title":"Game of neutrophils: modeling the balance between apoptosis and necrosis","display_name":"Game of neutrophils: modeling the balance between apoptosis and necrosis","publication_year":2019,"publication_date":"2019-12-01","ids":{"openalex":"https://openalex.org/W2996284486","doi":"https://doi.org/10.1186/s12859-019-3044-6","mag":"2996284486","pmid":"https://pubmed.ncbi.nlm.nih.gov/31823711"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3044-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3044-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3044-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3044-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051003424","display_name":"Alva Presbitero","orcid":"https://orcid.org/0000-0002-0889-9597"},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL","RU"],"is_corresponding":true,"raw_author_name":"Alva Presbitero","raw_affiliation_strings":["ITMO University, Saint Petersburg, Russian Federation. avpresbitero@corp.ifmo.ru","University of Amsterdam, Amsterdam, the Netherlands. avpresbitero@corp.ifmo.ru","ITMO University, Saint Petersburg, Russian Federation"],"raw_orcid":"https://orcid.org/0000-0002-0889-9597","affiliations":[{"raw_affiliation_string":"ITMO University, Saint Petersburg, Russian Federation. avpresbitero@corp.ifmo.ru","institution_ids":["https://openalex.org/I173089394"]},{"raw_affiliation_string":"University of Amsterdam, Amsterdam, the Netherlands. avpresbitero@corp.ifmo.ru","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"ITMO University, Saint Petersburg, Russian Federation","institution_ids":["https://openalex.org/I173089394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037781241","display_name":"Emiliano Mancini","orcid":"https://orcid.org/0000-0002-5613-234X"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Emiliano Mancini","raw_affiliation_strings":["University of Amsterdam, Amsterdam, the Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010454141","display_name":"Filippo Castiglione","orcid":"https://orcid.org/0000-0002-1442-3552"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["IT","NL"],"is_corresponding":false,"raw_author_name":"Filippo Castiglione","raw_affiliation_strings":["IAC- National Research Council of Italy, Rome, Italy","University of Amsterdam, Amsterdam, the Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IAC- National Research Council of Italy, Rome, Italy","institution_ids":["https://openalex.org/I4210155236"]},{"raw_affiliation_string":"University of Amsterdam, Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020563993","display_name":"Valeria V. Krzhizhanovskaya","orcid":"https://orcid.org/0000-0002-8247-129X"},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL","RU"],"is_corresponding":false,"raw_author_name":"Valeria V. Krzhizhanovskaya","raw_affiliation_strings":["ITMO University, Saint Petersburg, Russian Federation","University of Amsterdam, Amsterdam, the Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ITMO University, Saint Petersburg, Russian Federation","institution_ids":["https://openalex.org/I173089394"]},{"raw_affiliation_string":"University of Amsterdam, Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071222277","display_name":"Rick Quax","orcid":"https://orcid.org/0000-0002-0299-0074"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Rick Quax","raw_affiliation_strings":["University of Amsterdam, Amsterdam, the Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I887064364"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5051003424"],"corresponding_institution_ids":["https://openalex.org/I173089394","https://openalex.org/I887064364"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7875,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.7205744,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"20","issue":"S6","first_page":"475","last_page":"475"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10371","display_name":"Immune Response and Inflammation","score":0.35429999232292175,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10371","display_name":"Immune Response and Inflammation","score":0.35429999232292175,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12672","display_name":"Phagocytosis and Immune Regulation","score":0.3303000032901764,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11597","display_name":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","score":0.11249999701976776,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inflammation","display_name":"Inflammation","score":0.8359469175338745},{"id":"https://openalex.org/keywords/innate-immune-system","display_name":"Innate immune system","score":0.7411205172538757},{"id":"https://openalex.org/keywords/necroptosis","display_name":"Necroptosis","score":0.6309003829956055},{"id":"https://openalex.org/keywords/necrosis","display_name":"Necrosis","score":0.600316047668457},{"id":"https://openalex.org/keywords/programmed-cell-death","display_name":"Programmed cell death","score":0.596998393535614},{"id":"https://openalex.org/keywords/apoptosis","display_name":"Apoptosis","score":0.5799039602279663},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.5442743897438049},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5273046493530273},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5200640559196472},{"id":"https://openalex.org/keywords/insult","display_name":"Insult","score":0.45780181884765625},{"id":"https://openalex.org/keywords/tumor-necrosis-factor-alpha","display_name":"Tumor necrosis factor alpha","score":0.44757723808288574},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.41593754291534424},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09950235486030579}],"concepts":[{"id":"https://openalex.org/C2776914184","wikidata":"https://www.wikidata.org/wiki/Q101991","display_name":"Inflammation","level":2,"score":0.8359469175338745},{"id":"https://openalex.org/C136449434","wikidata":"https://www.wikidata.org/wiki/Q428253","display_name":"Innate immune system","level":3,"score":0.7411205172538757},{"id":"https://openalex.org/C94030615","wikidata":"https://www.wikidata.org/wiki/Q3346925","display_name":"Necroptosis","level":4,"score":0.6309003829956055},{"id":"https://openalex.org/C503630168","wikidata":"https://www.wikidata.org/wiki/Q178069","display_name":"Necrosis","level":2,"score":0.600316047668457},{"id":"https://openalex.org/C31573885","wikidata":"https://www.wikidata.org/wiki/Q304484","display_name":"Programmed cell death","level":3,"score":0.596998393535614},{"id":"https://openalex.org/C190283241","wikidata":"https://www.wikidata.org/wiki/Q14599311","display_name":"Apoptosis","level":2,"score":0.5799039602279663},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.5442743897438049},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5273046493530273},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5200640559196472},{"id":"https://openalex.org/C2780358164","wikidata":"https://www.wikidata.org/wiki/Q571571","display_name":"Insult","level":2,"score":0.45780181884765625},{"id":"https://openalex.org/C17991360","wikidata":"https://www.wikidata.org/wiki/Q21173843","display_name":"Tumor necrosis factor alpha","level":2,"score":0.44757723808288574},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.41593754291534424},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09950235486030579},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005716","descriptor_name":"Game Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005716","descriptor_name":"Game Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005716","descriptor_name":"Game Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005716","descriptor_name":"Game Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009336","descriptor_name":"Necrosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009336","descriptor_name":"Necrosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009336","descriptor_name":"Necrosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009336","descriptor_name":"Necrosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009504","descriptor_name":"Neutrophils","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009504","descriptor_name":"Neutrophils","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009504","descriptor_name":"Neutrophils","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009504","descriptor_name":"Neutrophils","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-019-3044-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3044-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3044-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31823711","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31823711","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/15d5a6cd-7a98-4162-a371-7c165c8d5c34","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/game-of-neutrophils-modeling-the-balance-between-apoptosis-and-necrosis(15d5a6cd-7a98-4162-a371-7c165c8d5c34).html","pdf_url":"https://pure.uva.nl/ws/files/55281506/s12859_019_3044_6.pdf","source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Presbitero, A, Mancini, E, Castiglione, F, Krzhizhanovskaya, V V & Quax, R 2019, 'Game of neutrophils: modeling the balance between apoptosis and necrosis', BMC Bioinformatics, vol. 20, no. Supplement 6, 475. https://doi.org/10.1186/s12859-019-3044-6","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:uvapub:oai:dare.uva.nl:publications/15d5a6cd-7a98-4162-a371-7c165c8d5c34","is_oa":true,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/game-of-neutrophils-modeling-the-balance-between-apoptosis-and-necrosis(15d5a6cd-7a98-4162-a371-7c165c8d5c34).html","pdf_url":"https://dare.uva.nl/personal/pure/en/publications/game-of-neutrophils-modeling-the-balance-between-apoptosis-and-necrosis(15d5a6cd-7a98-4162-a371-7c165c8d5c34).html","source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 20(Supplement 6):475. BioMed Central","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/15d5a6cd-7a98-4162-a371-7c165c8d5c34","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:doaj.org/article:f1502dffc447454686a78877c1a1f9e6","is_oa":true,"landing_page_url":"https://doaj.org/article/f1502dffc447454686a78877c1a1f9e6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss S6, Pp 1-17 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5872234","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6905093","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3044-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3044-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3044-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6899999976158142}],"awards":[{"id":"https://openalex.org/G3724477965","display_name":null,"funder_award_id":"#14.575.21.0161 (26/09/2017). Unique Identification RFMEFI57517X0161","funder_id":"https://openalex.org/F4320321912","funder_display_name":"Ministry of Education and Science of the Russian Federation"},{"id":"https://openalex.org/G4370651714","display_name":null,"funder_award_id":"RFMEFI57517X0161","funder_id":"https://openalex.org/F4320321912","funder_display_name":"Ministry of Education and Science of the Russian Federation"},{"id":"https://openalex.org/G6411927796","display_name":null,"funder_award_id":"14.575.21.0161","funder_id":"https://openalex.org/F4320321912","funder_display_name":"Ministry of Education and Science of the Russian Federation"}],"funders":[{"id":"https://openalex.org/F4320321912","display_name":"Ministry of Education and Science of the Russian Federation","ror":"https://ror.org/00ghqgy32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2996284486.pdf","grobid_xml":"https://content.openalex.org/works/W2996284486.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1918928165","https://openalex.org/W1968241763","https://openalex.org/W1968442371","https://openalex.org/W2013202400","https://openalex.org/W2016281184","https://openalex.org/W2023374319","https://openalex.org/W2024284041","https://openalex.org/W2034280388","https://openalex.org/W2041597162","https://openalex.org/W2051420025","https://openalex.org/W2053411326","https://openalex.org/W2067050450","https://openalex.org/W2074107830","https://openalex.org/W2085157467","https://openalex.org/W2086335524","https://openalex.org/W2089385363","https://openalex.org/W2089782191","https://openalex.org/W2093799856","https://openalex.org/W2102742832","https://openalex.org/W2105973197","https://openalex.org/W2107239890","https://openalex.org/W2115416240","https://openalex.org/W2149128385","https://openalex.org/W2159360750","https://openalex.org/W2163240674","https://openalex.org/W2169063888","https://openalex.org/W2311169678","https://openalex.org/W2404959529","https://openalex.org/W2537454646","https://openalex.org/W2797585760","https://openalex.org/W2886992199","https://openalex.org/W2896578284","https://openalex.org/W2912246103","https://openalex.org/W4375906334"],"related_works":["https://openalex.org/W2475481248","https://openalex.org/W2621136438","https://openalex.org/W1952688415","https://openalex.org/W4235396528","https://openalex.org/W2071430672","https://openalex.org/W2020112528","https://openalex.org/W10561809","https://openalex.org/W2991355330","https://openalex.org/W3143577155","https://openalex.org/W243056473"],"abstract_inverted_index":{"BACKGROUND:":[0],"Neutrophils":[1],"are":[2,32,204],"one":[3],"of":[4,18,37,77,106,112,121,132,136,145,152,166,171,178,190,214,223,265,276,288,305],"the":[5,9,16,22,35,41,44,58,75,82,99,104,110,118,128,133,143,146,159,162,167,188,212,233,238,262,269,274,289,303,306],"key":[6],"players":[7],"in":[8,173,245,249,281],"human":[10],"innate":[11,147],"immune":[12,148],"system":[13],"(HIIS).":[14],"In":[15],"event":[17],"an":[19,228],"insult":[20,38,59],"where":[21],"body":[23],"is":[24,46,60,155,268],"exposed":[25,219],"to":[26,109,115,117,156,175,206,220,237,251,292,295],"inflammation":[27,45,291],"triggering":[28,103],"moieties":[29],"(ITMs),":[30],"neutrophils":[31,48,64,108,284],"mobilized":[33],"towards":[34],"site":[36,111],"and":[39,130,164,216,243,278,283],"antagonize":[40],"inflammation.":[42,93,123],"If":[43],"cleared,":[47],"go":[49],"into":[50,81],"a":[51,67,208,297],"programmed":[52],"death":[53,69,137,169,248,298],"called":[54,71],"apoptosis.":[55],"However,":[56],"if":[57],"intense":[61],"or":[62],"persistent,":[63],"take":[65],"on":[66],"violent":[68],"pathway":[70,138,299],"necrosis,":[72],"which":[73],"involves":[74],"rupture":[76],"their":[78],"cytoplasmic":[79],"content":[80],"surrounding":[83],"tissue":[84,88],"that":[85,197,210,260,272,300],"causes":[86],"local":[87],"damage,":[89],"thus":[90],"further":[91],"aggravating":[92],"This":[94,124],"seemingly":[95],"paradoxical":[96],"phenomenon":[97],"fuels":[98],"inflammatory":[100],"process":[101],"by":[102,186,198],"recruitment":[105],"additional":[107],"inflammation,":[113],"aimed":[114],"contribute":[116],"complete":[119],"neutralization":[120],"severe":[122],"delicate":[125,239],"balance":[126,240],"between":[127,161,241],"cost":[129,163,264],"benefit":[131,165],"neutrophils'":[134,246],"choice":[135],"has":[139,180],"been":[140,181],"optimized":[141,182],"during":[142],"evolution":[144],"system.":[149],"The":[150],"goal":[151],"our":[153,255],"work":[154],"understand":[157],"how":[158],"tradeoff":[160],"different":[168,252],"pathways":[170],"neutrophils,":[172],"response":[174,250],"various":[176,221],"levels":[177,222],"insults,":[179],"over":[183],"evolutionary":[184,191,200,229],"time":[185],"using":[187,199],"concepts":[189],"game":[192,201,209],"theory.":[193],"RESULTS:":[194],"We":[195],"show":[196],"theory,":[202],"we":[203,231,258],"able":[205,294],"formulate":[207],"predicts":[211],"percentage":[213,275],"necrosis":[215,244,277],"apoptosis":[217,242,279],"when":[218],"insults.":[224,253],"CONCLUSION:":[225],"By":[226],"adopting":[227],"perspective,":[230],"identify":[232],"driving":[234,270],"mechanisms":[235],"leading":[236],"cell":[247],"Using":[254],"simple":[256],"model,":[257],"verify":[259],"indeed,":[261],"global":[263],"remaining":[266],"ITMs":[267],"mechanism":[271],"reproduces":[273],"observed":[280],"data":[282],"need":[285],"sufficient":[286],"information":[287],"overall":[290],"be":[293],"pick":[296],"presumably":[301],"increases":[302],"survival":[304],"organism.":[307]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
