{"id":"https://openalex.org/W2968778554","doi":"https://doi.org/10.1186/s12859-019-3015-y","title":"FQStat: a parallel architecture for very high-speed assessment of sequencing quality metrics","display_name":"FQStat: a parallel architecture for very high-speed assessment of sequencing quality metrics","publication_year":2019,"publication_date":"2019-08-15","ids":{"openalex":"https://openalex.org/W2968778554","doi":"https://doi.org/10.1186/s12859-019-3015-y","mag":"2968778554","pmid":"https://pubmed.ncbi.nlm.nih.gov/31416440"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3015-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3015-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3015-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3015-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082982828","display_name":"Sree K. Chanumolu","orcid":null},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sree K. Chanumolu","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079488315","display_name":"Mustafa Albahrani","orcid":"https://orcid.org/0000-0002-4532-6018"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mustafa Albahrani","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000992292","display_name":"Hasan H. Otu","orcid":"https://orcid.org/0000-0002-9253-8152"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hasan H. Otu","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA. hotu2@unl.edu","Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA"],"raw_orcid":"https://orcid.org/0000-0002-9253-8152","affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA. hotu2@unl.edu","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5000992292"],"corresponding_institution_ids":["https://openalex.org/I114395901"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.4559,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.60526415,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"20","issue":"1","first_page":"424","last_page":"424"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9150999784469604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9150999784469604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.02160000056028366,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.019099999219179153,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6362111568450928},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.5272820591926575},{"id":"https://openalex.org/keywords/quality-assessment","display_name":"Quality assessment","score":0.515458881855011},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.44084441661834717},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4258517026901245},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.4206365644931793},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26326391100883484},{"id":"https://openalex.org/keywords/reliability-engineering","display_name":"Reliability engineering","score":0.20519229769706726},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13274043798446655},{"id":"https://openalex.org/keywords/evaluation-methods","display_name":"Evaluation methods","score":0.0971125066280365}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6362111568450928},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5272820591926575},{"id":"https://openalex.org/C3020001037","wikidata":"https://www.wikidata.org/wiki/Q836575","display_name":"Quality assessment","level":3,"score":0.515458881855011},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.44084441661834717},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4258517026901245},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.4206365644931793},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26326391100883484},{"id":"https://openalex.org/C200601418","wikidata":"https://www.wikidata.org/wiki/Q2193887","display_name":"Reliability engineering","level":1,"score":0.20519229769706726},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13274043798446655},{"id":"https://openalex.org/C3018395757","wikidata":"https://www.wikidata.org/wiki/Q1379672","display_name":"Evaluation methods","level":2,"score":0.0971125066280365},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-019-3015-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3015-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3015-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31416440","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31416440","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:5651055","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6694608","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:digitalcommons.unl.edu:electricalengineeringfacpub-1478","is_oa":true,"landing_page_url":"https://digitalcommons.unl.edu/electricalengineeringfacpub/479","pdf_url":null,"source":{"id":"https://openalex.org/S4306400577","display_name":"Lincoln (University of Nebraska)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114395901","host_organization_name":"University of Nebraska\u2013Lincoln","host_organization_lineage":["https://openalex.org/I114395901"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications from the Department of Electrical and Computer Engineering","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:146cb6a93ff64475af3dccc9bff23cd9","is_oa":false,"landing_page_url":"https://doaj.org/article/146cb6a93ff64475af3dccc9bff23cd9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-10 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3015-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3015-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-3015-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5400000214576721}],"awards":[{"id":"https://openalex.org/G1208323231","display_name":null,"funder_award_id":"R21 LM012759","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G6743093245","display_name":"Identification and characterization of interaction atlases in human","funder_award_id":"5r21lm012759-02","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2968778554.pdf","grobid_xml":"https://content.openalex.org/works/W2968778554.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1968458420","https://openalex.org/W1995070233","https://openalex.org/W1999773009","https://openalex.org/W2006010471","https://openalex.org/W2033167804","https://openalex.org/W2079958213","https://openalex.org/W2105868188","https://openalex.org/W2111734927","https://openalex.org/W2124093250","https://openalex.org/W2131271579","https://openalex.org/W2134513968","https://openalex.org/W2138019459","https://openalex.org/W2161739862","https://openalex.org/W2163553106","https://openalex.org/W2165446840","https://openalex.org/W2168477171","https://openalex.org/W2180642170","https://openalex.org/W2272917943","https://openalex.org/W2302703011","https://openalex.org/W2347048027","https://openalex.org/W2349526428","https://openalex.org/W2396849069","https://openalex.org/W2409382685","https://openalex.org/W2553077886","https://openalex.org/W2558202273","https://openalex.org/W2606135333","https://openalex.org/W2765268335","https://openalex.org/W2795934600","https://openalex.org/W2803948098","https://openalex.org/W2897422927","https://openalex.org/W4244006029"],"related_works":["https://openalex.org/W2588198209","https://openalex.org/W1909006023","https://openalex.org/W3200723557","https://openalex.org/W4205824991","https://openalex.org/W4312713546","https://openalex.org/W2362195430","https://openalex.org/W2347494122","https://openalex.org/W2038503502","https://openalex.org/W1963988314","https://openalex.org/W1924500548"],"abstract_inverted_index":{"BACKGROUND:":[0],"High":[1],"throughput":[2],"DNA/RNA":[3],"sequencing":[4,39,85,233,246,304],"has":[5,41,186],"revolutionized":[6],"biological":[7],"and":[8,15,27,49,79,119,129,210,216,224,230,251,271,293,316,322],"clinical":[9],"research.":[10],"Sequencing":[11],"is":[12,55,64,98,164,201,279],"widely":[13],"used,":[14],"generates":[16],"very":[17],"large":[18],"amounts":[19],"of":[20,34,38,51,59,84,91,108,127,132,156,197,328,338],"data,":[21,121],"mainly":[22],"due":[23],"to":[24,134,194,235,248,252,261,298,325],"reduced":[25],"cost":[26],"advanced":[28],"technologies.":[29],"Quickly":[30],"assessing":[31],"the":[32,82,106,116,125,130,154,195,319,329,336],"quality":[33,83,107,222,263,300],"giga-to-tera":[35],"base":[36,226],"levels":[37],"data":[40,54,86,234,247,343],"become":[42],"a":[43,65,68,99,147,160,165,187,280,284,289],"routine":[44],"but":[45],"important":[46],"task.":[47],"Identification":[48],"elimination":[50],"low-quality":[52,232],"sequence":[53],"crucial":[56],"for":[57,67,76,139,303,313],"reliability":[58],"downstream":[60,239],"analysis":[61],"results.":[62],"There":[63],"need":[66],"high-speed":[69],"tool":[70,103,282],"that":[71,104,145,181,267,287],"uses":[72],"optimized":[73],"parallel":[74,112,269,290],"programming":[75,270,291],"batch":[77],"processing":[78,94],"simply":[80],"gauges":[81],"from":[87,238],"multiple":[88,314],"datasets":[89,315],"independent":[90],"any":[92],"other":[93],"steps.":[95],"RESULTS:":[96],"FQStat":[97,122,214,228,243,278],"stand-alone,":[100],"platform-independent":[101],"software":[102],"assesses":[105],"FASTQ":[109],"files":[110],"using":[111],"programming.":[113],"Based":[114],"on":[115,244],"machine":[117],"architecture":[118,292],"input":[120],"automatically":[123,294],"determines":[124],"number":[126],"cores":[128,175],"amount":[131],"memory":[133,182],"be":[135,346],"allocated":[136],"per":[137,176,184],"file":[138,185],"optimum":[140],"performance.":[141],"Our":[142],"results":[143],"indicate":[144],"in":[146,169,190,203,274],"core-limited":[148],"case,":[149,162],"core":[150],"assignment":[151],"overhead":[152],"exceeds":[153],"benefit":[155],"additional":[157,174],"cores.":[158,198],"In":[159],"core-unlimited":[161],"there":[163],"saturation":[166],"point":[167],"reached":[168],"performance":[170,191,250,260,297],"by":[171],"increasingly":[172],"assigning":[173],"file.":[177],"We":[178,241,256],"also":[179,257],"show":[180],"allocation":[183,196],"lower":[188],"priority":[189],"when":[192,341],"compared":[193,258],"FQStat's":[199,259],"output":[200],"summarized":[202],"HTML":[204],"web":[205],"page,":[206],"tab-delimited":[207],"text":[208],"file,":[209],"high-resolution":[211],"image":[212],"formats.":[213],"calculates":[215],"plots":[217],"read":[218,220],"count,":[219],"length,":[221],"score,":[223],"high-quality":[225],"statistics.":[227],"identifies":[229],"marks":[231],"suggest":[236],"removal":[237],"analysis.":[240],"applied":[242],"real":[245],"optimize":[249],"demonstrate":[253],"its":[254,296],"capabilities.":[255],"similar":[262],"control":[264,301],"(QC)":[265],"tools":[266],"utilize":[268],"attained":[272],"improvements":[273],"run":[275],"time.":[276],"CONCLUSIONS:":[277],"user-friendly":[281],"with":[283,331],"graphical":[285],"interface":[286],"employs":[288],"optimizes":[295],"generate":[299],"statistics":[302,310],"data.":[305],"Unlike":[306],"existing":[307],"tools,":[308],"these":[309],"are":[311],"calculated":[312],"separately":[317],"at":[318],"\"lane,\"":[320],"\"sample,\"":[321],"\"experiment\"":[323],"level":[324],"identify":[326],"subsets":[327],"samples":[330,340],"low":[332],"quality,":[333],"thereby":[334],"preventing":[335],"loss":[337],"complete":[339],"reliable":[342],"can":[344],"still":[345],"obtained.":[347]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}