{"id":"https://openalex.org/W2968628747","doi":"https://doi.org/10.1186/s12859-019-3005-0","title":"Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries","display_name":"Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries","publication_year":2019,"publication_date":"2019-08-17","ids":{"openalex":"https://openalex.org/W2968628747","doi":"https://doi.org/10.1186/s12859-019-3005-0","mag":"2968628747","pmid":"https://pubmed.ncbi.nlm.nih.gov/31419946"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3005-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3005-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3005-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3005-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101401275","display_name":"Yipei Wang","orcid":"https://orcid.org/0000-0002-9589-7177"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yipei Wang","raw_affiliation_strings":["State Key Laboratory of Software Development Environment and Key Laboratory of Biomechanics and Mechanobiology of Ministry of Education and Research Institute of Beihang University in Shenzhen, Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Xueyuan Road No.37, Beijing, 100191, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Software Development Environment and Key Laboratory of Biomechanics and Mechanobiology of Ministry of Education and Research Institute of Beihang University in Shenzhen, Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Xueyuan Road No.37, Beijing, 100191, China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112959043","display_name":"Xingyu Fan","orcid":"https://orcid.org/0009-0005-4680-6012"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingyu Fan","raw_affiliation_strings":["Bioengineering College of Chongqing University, Shazheng Street No. 174, Chongqing, 400044, China"],"affiliations":[{"raw_affiliation_string":"Bioengineering College of Chongqing University, Shazheng Street No. 174, Chongqing, 400044, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052131884","display_name":"Luoxin Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Luoxin Chen","raw_affiliation_strings":["State Key Laboratory of Software Development Environment and Key Laboratory of Biomechanics and Mechanobiology of Ministry of Education and Research Institute of Beihang University in Shenzhen, Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Xueyuan Road No.37, Beijing, 100191, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Software Development Environment and Key Laboratory of Biomechanics and Mechanobiology of Ministry of Education and Research Institute of Beihang University in Shenzhen, Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Xueyuan Road No.37, Beijing, 100191, China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087298985","display_name":"Eric Chang","orcid":"https://orcid.org/0000-0002-9678-5994"},"institutions":[{"id":"https://openalex.org/I4210113369","display_name":"Microsoft Research Asia (China)","ror":"https://ror.org/0300m5276","country_code":"CN","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210113369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Eric I-Chao Chang","raw_affiliation_strings":["Microsoft Research, Danling Street No. 5, Beijing, 100080, China"],"affiliations":[{"raw_affiliation_string":"Microsoft Research, Danling Street No. 5, Beijing, 100080, China","institution_ids":["https://openalex.org/I4210113369"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["The National Centre for Text Mining, School of Computer Science, The University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"The National Centre for Text Mining, School of Computer Science, The University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112241147","display_name":"Jun\u2019ichi Tsujii","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Junichi Tsujii","raw_affiliation_strings":["Artificial Intelligence Research Center (AIRC), Tokyo, Japan","The National Centre for Text Mining, School of Computer Science, The University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Center (AIRC), Tokyo, Japan","institution_ids":[]},{"raw_affiliation_string":"The National Centre for Text Mining, School of Computer Science, The University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100445660","display_name":"Yan Xu","orcid":"https://orcid.org/0000-0002-2636-7594"},"institutions":[{"id":"https://openalex.org/I4210113369","display_name":"Microsoft Research Asia (China)","ror":"https://ror.org/0300m5276","country_code":"CN","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210113369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Xu","raw_affiliation_strings":["Microsoft Research, Danling Street No. 5, Beijing, 100080, China. xuyan04@gmail.com","State Key Laboratory of Software Development Environment and Key Laboratory of Biomechanics and Mechanobiology of Ministry of Education and Research Institute of Beihang University in Shenzhen, Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Xueyuan Road No.37, Beijing, 100191, China. xuyan04@gmail.com","Microsoft Research, Danling Street No. 5, Beijing, 100080, China"],"affiliations":[{"raw_affiliation_string":"Microsoft Research, Danling Street No. 5, Beijing, 100080, China. xuyan04@gmail.com","institution_ids":[]},{"raw_affiliation_string":"State Key Laboratory of Software Development Environment and Key Laboratory of Biomechanics and Mechanobiology of Ministry of Education and Research Institute of Beihang University in Shenzhen, Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Xueyuan Road No.37, Beijing, 100191, China. xuyan04@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Microsoft Research, Danling Street No. 5, Beijing, 100080, China","institution_ids":["https://openalex.org/I4210113369"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5101401275"],"corresponding_institution_ids":["https://openalex.org/I82880672"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5994,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.6711516,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"20","issue":"1","first_page":"430","last_page":"430"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.8559979200363159},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8047579526901245},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6784413456916809},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5831484198570251},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5572620630264282},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5403199195861816},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.5175320506095886},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.45726168155670166},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.4515206515789032},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39853012561798096}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.8559979200363159},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8047579526901245},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6784413456916809},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5831484198570251},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5572620630264282},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5403199195861816},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.5175320506095886},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.45726168155670166},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.4515206515789032},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39853012561798096},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C111368507","wikidata":"https://www.wikidata.org/wiki/Q43518","display_name":"Oceanography","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-019-3005-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3005-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3005-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31419946","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31419946","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:fc5d8efd22534e65a007dd62fa3d23b2","is_oa":true,"landing_page_url":"https://doaj.org/article/fc5d8efd22534e65a007dd62fa3d23b2","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-11 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5651543","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6697955","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/735cc0f6-8b65-42d6-92cd-8ba34148f074","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/735cc0f6-8b65-42d6-92cd-8ba34148f074","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wang, Y, Fan, X, Chen, L, Chang, E I, Ananiadou, S, Tsujii, J & Xu, Y 2019, 'Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries', BMC Bioinformatics, vol. 20, no. 1. https://doi.org/10.1186/s12859-019-3005-0","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/735cc0f6-8b65-42d6-92cd-8ba34148f074","is_oa":true,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/mapping-anatomical-related-entities-to-human-body-parts-based-on-wikipedia-in-discharge-summaries(735cc0f6-8b65-42d6-92cd-8ba34148f074).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3005-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3005-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3005-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8100000023841858,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3300488819","display_name":null,"funder_award_id":"81771910","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4365314885","display_name":null,"funder_award_id":"MR/N00583X/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7463721486","display_name":null,"funder_award_id":"4152033","funder_id":"https://openalex.org/F4320322919","funder_display_name":"Natural Science Foundation of Beijing Municipality"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322919","display_name":"Natural Science Foundation of Beijing Municipality","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2968628747.pdf","grobid_xml":"https://content.openalex.org/works/W2968628747.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W82967861","https://openalex.org/W90362830","https://openalex.org/W96592148","https://openalex.org/W136741500","https://openalex.org/W306724193","https://openalex.org/W1034019924","https://openalex.org/W1525742988","https://openalex.org/W1550258693","https://openalex.org/W1594324467","https://openalex.org/W1594826301","https://openalex.org/W1791148566","https://openalex.org/W1933390880","https://openalex.org/W1986727175","https://openalex.org/W1991154713","https://openalex.org/W2083331107","https://openalex.org/W2091155135","https://openalex.org/W2095679373","https://openalex.org/W2095896451","https://openalex.org/W2097101873","https://openalex.org/W2098162425","https://openalex.org/W2103017472","https://openalex.org/W2105583547","https://openalex.org/W2107005506","https://openalex.org/W2107580398","https://openalex.org/W2113234275","https://openalex.org/W2114290255","https://openalex.org/W2114536157","https://openalex.org/W2115537060","https://openalex.org/W2116034137","https://openalex.org/W2116190778","https://openalex.org/W2118925472","https://openalex.org/W2119276288","https://openalex.org/W2121111666","https://openalex.org/W2122402213","https://openalex.org/W2122545791","https://openalex.org/W2123143128","https://openalex.org/W2125117006","https://openalex.org/W2128635794","https://openalex.org/W2129038679","https://openalex.org/W2129367118","https://openalex.org/W2137362149","https://openalex.org/W2140815329","https://openalex.org/W2142016317","https://openalex.org/W2142786899","https://openalex.org/W2143742443","https://openalex.org/W2143902665","https://openalex.org/W2158308939","https://openalex.org/W2159583324","https://openalex.org/W2159608715","https://openalex.org/W2160194473","https://openalex.org/W2160259754","https://openalex.org/W2163670493","https://openalex.org/W2164205487","https://openalex.org/W2168041406","https://openalex.org/W2169491861","https://openalex.org/W2171374484","https://openalex.org/W2172172820","https://openalex.org/W2179372389","https://openalex.org/W2342612099","https://openalex.org/W2404369708","https://openalex.org/W2414378847","https://openalex.org/W2522519459","https://openalex.org/W2769851464","https://openalex.org/W2771576526","https://openalex.org/W2977393556","https://openalex.org/W3194758190","https://openalex.org/W4213060373","https://openalex.org/W4245219133","https://openalex.org/W4301101316","https://openalex.org/W6603998609"],"related_works":["https://openalex.org/W79619734","https://openalex.org/W2010487328","https://openalex.org/W2340589664","https://openalex.org/W4281750475","https://openalex.org/W3087321790","https://openalex.org/W186091728","https://openalex.org/W2939811865","https://openalex.org/W2914601452","https://openalex.org/W2418017279","https://openalex.org/W2169373522"],"abstract_inverted_index":{"*:":[0,113,156],"Background":[1],"Consisting":[2],"of":[3,46,64,84,137,154],"dictated":[4],"free-text":[5],"documents":[6],"such":[7],"as":[8],"discharge":[9,122],"summaries,":[10],"medical":[11,17,33,74],"narratives":[12],"are":[13,29,133],"widely":[14],"used":[15],"in":[16,128],"natural":[18],"language":[19],"processing.":[20],"Relationships":[21],"between":[22],"anatomical":[23,91,96,131,164],"entities":[24,132,165],"and":[25,51,98,171,188],"human":[26],"body":[27],"parts":[28,92],"crucial":[30],"for":[31,110],"building":[32],"text":[34],"mining":[35],"applications.":[36],"To":[37],"achieve":[38],"this,":[39],"we":[40],"establish":[41],"a":[42,47,52,71,80,160,172],"mapping":[43,59,107],"system":[44,60,108,140],"consisting":[45],"Wikipedia-based":[48],"scoring":[49,173],"algorithm":[50,145,174],"named":[53],"entity":[54],"normalization":[55,170],"method":[56],"(NEN).":[57],"The":[58,115,135,178],"makes":[61],"full":[62],"use":[63],"information":[65],"available":[66],"on":[67,147,176],"Wikipedia,":[68],"which":[69,129],"is":[70,118,141,181],"comprehensive":[72],"Internet":[73],"knowledge":[75],"base.":[76],"We":[77,158],"also":[78],"built":[79],"new":[81],"ontology,":[82],"Tree":[83],"Human":[85],"Body":[86],"Parts":[87],"(THBP),":[88],"from":[89,120,124],"core":[90],"by":[93],"referring":[94],"to":[95,104,162,166,183],"experts":[97],"Unified":[99],"Medical":[100],"Language":[101],"Systems":[102],"(UMLS)":[103],"make":[105],"the":[106,138,152,191],"efficacious":[109],"clinical":[111],"treatments.":[112],"Result":[114],"gold":[116],"standard":[117],"derived":[119],"50":[121],"summaries":[123],"our":[125,144],"previous":[126],"work,":[127],"2,224":[130],"included.":[134],"F1-measure":[136],"baseline":[139,193],"70.20%,":[142],"while":[143],"based":[146,175],"Wikipedia":[148],"achieves":[149],"86.67%":[150],"with":[151],"assistance":[153],"NEN.":[155],"Conclusions":[157],"construct":[159],"framework":[161,180],"map":[163],"THBP":[167],"ontology":[168],"using":[169],"Wikipedia.":[177],"proposed":[179],"proven":[182],"be":[184],"much":[185],"more":[186],"effective":[187],"efficient":[189],"than":[190],"main":[192],"system.":[194]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":49},{"year":2022,"cited_by_count":6},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
