{"id":"https://openalex.org/W2965518110","doi":"https://doi.org/10.1186/s12859-019-3002-3","title":"ROBOT: A Tool for Automating Ontology Workflows","display_name":"ROBOT: A Tool for Automating Ontology Workflows","publication_year":2019,"publication_date":"2019-07-29","ids":{"openalex":"https://openalex.org/W2965518110","doi":"https://doi.org/10.1186/s12859-019-3002-3","mag":"2965518110","pmid":"https://pubmed.ncbi.nlm.nih.gov/31357927"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3002-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3002-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3002-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3002-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072483501","display_name":"Rebecca Jackson","orcid":"https://orcid.org/0000-0003-4871-5569"},"institutions":[{"id":"https://openalex.org/I4210151983","display_name":"Limnological Institute","ror":"https://ror.org/04tfjah29","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210151983","https://openalex.org/I4210163714"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Rebecca C. Jackson","raw_affiliation_strings":["Knocean Inc., Toronto, Ontario, Canada. rbca.jackson@gmail.com","Knocean Inc., Toronto, Ontario, Canada"],"raw_orcid":"https://orcid.org/0000-0003-4871-5569","affiliations":[{"raw_affiliation_string":"Knocean Inc., Toronto, Ontario, Canada. rbca.jackson@gmail.com","institution_ids":["https://openalex.org/I4210151983"]},{"raw_affiliation_string":"Knocean Inc., Toronto, Ontario, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021056529","display_name":"James P. Balhoff","orcid":"https://orcid.org/0000-0002-8688-6599"},"institutions":[{"id":"https://openalex.org/I69048370","display_name":"Renaissance Computing Institute","ror":"https://ror.org/01s91ey96","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535","https://openalex.org/I170897317","https://openalex.org/I69048370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James P. Balhoff","raw_affiliation_strings":["Renaissance Computing Institute, University of North Carolina, Chapel Hill, North Carolina, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Renaissance Computing Institute, University of North Carolina, Chapel Hill, North Carolina, USA","institution_ids":["https://openalex.org/I69048370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009398196","display_name":"Eric Douglass","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Douglass","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, California, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031007073","display_name":"Nomi L. Harris","orcid":"https://orcid.org/0000-0001-6315-3707"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nomi L. Harris","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, California, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Mungall","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, California, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009238690","display_name":"James A. Overton","orcid":"https://orcid.org/0000-0001-5139-5557"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James A. Overton","raw_affiliation_strings":["Knocean Inc., Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Knocean Inc., Toronto, Ontario, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5072483501"],"corresponding_institution_ids":["https://openalex.org/I4210151983"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.4701,"has_fulltext":true,"cited_by_count":199,"citation_normalized_percentile":{"value":0.96820187,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"20","issue":"1","first_page":"407","last_page":"407"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8478999733924866,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8478999733924866,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.10050000250339508,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.01730000041425228,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7962400317192078},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6883507966995239},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6638926267623901},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5696377754211426},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5624494552612305},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.5023941993713379},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4698103070259094},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.454872727394104},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4501969814300537},{"id":"https://openalex.org/keywords/ontology-language","display_name":"Ontology language","score":0.4340742230415344},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.407377153635025},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32160666584968567},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.245307058095932},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2081429362297058},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.17029038071632385},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07484090328216553}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7962400317192078},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6883507966995239},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6638926267623901},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5696377754211426},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5624494552612305},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.5023941993713379},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4698103070259094},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.454872727394104},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4501969814300537},{"id":"https://openalex.org/C61673122","wikidata":"https://www.wikidata.org/wiki/Q7095059","display_name":"Ontology language","level":3,"score":0.4340742230415344},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.407377153635025},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32160666584968567},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.245307058095932},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2081429362297058},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.17029038071632385},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07484090328216553},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-019-3002-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3002-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3002-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31357927","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31357927","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:osti.gov:1560605","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1560605","pdf_url":"https://www.osti.gov/servlets/purl/1560605","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:ark:/13030/qt3v0036mg","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:a391b5bcac9844e38d0203c524c8b7e1","is_oa":true,"landing_page_url":"https://doaj.org/article/a391b5bcac9844e38d0203c524c8b7e1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-10 (2019)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt3v0036mg","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/3v0036mg","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics, vol 20, iss 1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5627259","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6664714","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3002-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3002-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3002-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G1772028580","display_name":null,"funder_award_id":"R24-HG010032","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G1819449706","display_name":null,"funder_award_id":"U41HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3594025709","display_name":null,"funder_award_id":"HHSN272201200010C","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G4748032021","display_name":null,"funder_award_id":"1-U19-AI-118626-01","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G5190375192","display_name":null,"funder_award_id":"HHSN272201200010C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G6845131987","display_name":null,"funder_award_id":"HHSN272201200010C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2965518110.pdf","grobid_xml":"https://content.openalex.org/works/W2965518110.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W55962619","https://openalex.org/W64998266","https://openalex.org/W78944135","https://openalex.org/W124940209","https://openalex.org/W192221291","https://openalex.org/W1965091013","https://openalex.org/W2006015318","https://openalex.org/W2021074129","https://openalex.org/W2049625541","https://openalex.org/W2062558911","https://openalex.org/W2101491706","https://openalex.org/W2113142309","https://openalex.org/W2130420078","https://openalex.org/W2140611297","https://openalex.org/W2147729309","https://openalex.org/W2150829627","https://openalex.org/W2178026535","https://openalex.org/W2394984303","https://openalex.org/W2395396051","https://openalex.org/W2531883117","https://openalex.org/W2624086276","https://openalex.org/W2743228197","https://openalex.org/W2783839275","https://openalex.org/W2792132368","https://openalex.org/W4249676786","https://openalex.org/W4253051217","https://openalex.org/W6605117347","https://openalex.org/W6607911452","https://openalex.org/W6655477598","https://openalex.org/W6711558577"],"related_works":["https://openalex.org/W72173000","https://openalex.org/W2127299687","https://openalex.org/W991275336","https://openalex.org/W1506177826","https://openalex.org/W2394747331","https://openalex.org/W2401469280","https://openalex.org/W4232959661","https://openalex.org/W1838034317","https://openalex.org/W2376385420","https://openalex.org/W1501187313"],"abstract_inverted_index":{"BACKGROUND:":[0],"Ontologies":[1,104],"are":[2,320],"invaluable":[3],"in":[4,42,68,286],"the":[5,53,74,79,85,94,99,109,174,183,336,342],"life":[6],"sciences,":[7],"but":[8],"building":[9],"and":[10,26,32,38,57,62,102,128,154,191,216,238,275,282,298,328,339],"maintaining":[11],"ontologies":[12,72,319],"often":[13],"requires":[14],"a":[15,88,113,122,135,199,209,229,253,272],"challenging":[16],"number":[17],"of":[18,90,116,124,201,252,256,322,325,341],"distinct":[19],"tasks":[20,60,285],"such":[21,234],"as":[22,134,235],"running":[23,208,214],"automated":[24,288],"reasoners":[25],"quality":[27,332],"control":[28,333],"checks,":[29,334],"extracting":[30],"dependencies":[31],"application-specific":[33],"subsets,":[34],"generating":[35,39],"standard":[36,69,331],"reports,":[37,215],"release":[40,299],"files":[41],"multiple":[43],"formats.":[44],"Similar":[45],"to":[46,55,63,111,129,279,294,330],"more":[47,65,307],"general":[48],"software":[49,91],"development,":[50],"automation":[51,251],"is":[52,84,145,149,181],"key":[54],"executing":[56],"managing":[58],"these":[59],"effectively":[61],"releasing":[64],"robust":[66],"products":[67],"forms.":[70],"For":[71],"using":[73,228],"Web":[75],"Ontology":[76],"Language":[77],"(OWL),":[78],"OWL":[80,118],"API":[81,119],"Java":[82,175],"library":[83,123,153,163],"foundation":[86],"for":[87,143,157,198,205],"range":[89,115,255],"tools,":[92],"including":[93,203],"Prot\u00e9g\u00e9":[95],"ontology":[96,159,195,257,268,292,343],"editor.":[97],"In":[98],"Open":[100],"Biological":[101],"Biomedical":[103],"(OBO)":[105],"community,":[106],"we":[107],"recognized":[108],"need":[110],"package":[112],"wide":[114,254],"low-level":[117],"functionality":[120,270],"into":[121,225,271],"common":[125,266],"higher-level":[126],"operations":[127,132],"make":[130],"those":[131],"available":[133],"command-line":[136,155,184],"tool.":[137],"RESULTS:":[138],"ROBOT":[139,193,249],"(a":[140],"recursive":[141],"acronym":[142],"\"ROBOT":[144],"an":[146,150],"OBO":[147,262],"Tool\")":[148],"open":[151],"source":[152],"tool":[156],"automating":[158],"development":[160,258,269,311,344],"tasks.":[161,219,312],"The":[162],"can":[164,222,240,305],"be":[165,223,241],"called":[166],"from":[167],"any":[168],"programming":[169],"language":[170],"that":[171,303,317],"runs":[172,187],"on":[173,188,261,310],"Virtual":[176],"Machine":[177],"(JVM).":[178],"Most":[179],"usage":[180],"through":[182],"tool,":[185],"which":[186],"macOS,":[189],"Linux,":[190],"Windows.":[192],"provides":[194],"processing":[196],"commands":[197,204,221],"variety":[200],"tasks,":[202,259],"converting":[206],"formats,":[207],"reasoner,":[210],"creating":[211],"import":[212],"modules,":[213],"various":[217],"other":[218],"These":[220],"combined":[224],"larger":[226],"workflows":[227,239],"separate":[230],"task":[231],"execution":[232],"system":[233],"GNU":[236],"Make,":[237],"automatically":[242],"executed":[243],"within":[244],"continuous":[245],"integration":[246],"systems.":[247],"CONCLUSIONS:":[248],"supports":[250],"focusing":[260,309],"conventions.":[263],"It":[264,313],"packages":[265],"high-level":[267],"convenient":[273],"library,":[274],"makes":[276],"it":[277],"easy":[278],"configure,":[280],"combine,":[281],"execute":[283],"individual":[284],"comprehensive,":[287],"workflows.":[289],"This":[290],"helps":[291,315],"developers":[293],"efficiently":[295],"create,":[296],"maintain,":[297],"high-quality":[300],"ontologies,":[301],"so":[302],"they":[304],"spend":[306],"time":[308],"also":[314],"guarantee":[316],"released":[318],"free":[321],"certain":[323],"types":[324],"logical":[326],"errors":[327],"conform":[329],"increasing":[335],"overall":[337],"robustness":[338],"efficiency":[340],"lifecycle.":[345]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":44},{"year":2024,"cited_by_count":39},{"year":2023,"cited_by_count":41},{"year":2022,"cited_by_count":26},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":2}],"updated_date":"2026-05-09T13:55:54.758798","created_date":"2025-10-10T00:00:00"}
