{"id":"https://openalex.org/W2966230873","doi":"https://doi.org/10.1186/s12859-019-2991-2","title":"HIV drug resistance prediction with weighted categorical kernel functions","display_name":"HIV drug resistance prediction with weighted categorical kernel functions","publication_year":2019,"publication_date":"2019-07-30","ids":{"openalex":"https://openalex.org/W2966230873","doi":"https://doi.org/10.1186/s12859-019-2991-2","mag":"2966230873","pmid":"https://pubmed.ncbi.nlm.nih.gov/31362714"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2991-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2991-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2991-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2991-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010184910","display_name":"Elies Ramon","orcid":"https://orcid.org/0000-0002-7953-8115"},"institutions":[{"id":"https://openalex.org/I4210158808","display_name":"Center for Research in Agricultural Genomics","ror":"https://ror.org/04tz2h245","country_code":"ES","type":"facility","lineage":["https://openalex.org/I123044942","https://openalex.org/I157913058","https://openalex.org/I4210100913","https://openalex.org/I4210158808","https://openalex.org/I4387153040","https://openalex.org/I4387153040","https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Elies Ramon","raw_affiliation_strings":["Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB Consortium, Campus UAB, 08193 Bellaterra, Barcelona, Spain. elies.ramon@cragenomica.es","Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB Consortium, Campus UAB, 08193 Bellaterra, Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-7953-8115","affiliations":[{"raw_affiliation_string":"Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB Consortium, Campus UAB, 08193 Bellaterra, Barcelona, Spain. elies.ramon@cragenomica.es","institution_ids":["https://openalex.org/I4210158808"]},{"raw_affiliation_string":"Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB Consortium, Campus UAB, 08193 Bellaterra, Barcelona, Spain","institution_ids":["https://openalex.org/I4210158808"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019932837","display_name":"Llu\u00eds A. Belanche-Mu\u00f1oz","orcid":"https://orcid.org/0000-0002-7577-1964"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Llu\u00eds Belanche-Mu\u00f1oz","raw_affiliation_strings":["Computer Science Department, Technical University of Catalonia, Carrer de Jordi Girona 1-3, 08034, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Technical University of Catalonia, Carrer de Jordi Girona 1-3, 08034, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024101861","display_name":"Miguel P\u00e9rez\u2010Enciso","orcid":"https://orcid.org/0000-0003-3524-995X"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I4210158808","display_name":"Center for Research in Agricultural Genomics","ror":"https://ror.org/04tz2h245","country_code":"ES","type":"facility","lineage":["https://openalex.org/I123044942","https://openalex.org/I157913058","https://openalex.org/I4210100913","https://openalex.org/I4210158808","https://openalex.org/I4387153040","https://openalex.org/I4387153040","https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel P\u00e9rez-Enciso","raw_affiliation_strings":["Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB Consortium, Campus UAB, 08193 Bellaterra, Barcelona, Spain","Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA), Passeig de Llu\u00eds Companys 23, 08010, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB Consortium, Campus UAB, 08193 Bellaterra, Barcelona, Spain","institution_ids":["https://openalex.org/I4210158808"]},{"raw_affiliation_string":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA), Passeig de Llu\u00eds Companys 23, 08010, Barcelona, Spain","institution_ids":["https://openalex.org/I11932220"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010184910"],"corresponding_institution_ids":["https://openalex.org/I4210158808"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.3147,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.88424025,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"410","last_page":"410"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.6735000014305115,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.6735000014305115,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.03629999980330467,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11655","display_name":"HIV-related health complications and treatments","score":0.03620000183582306,"subfield":{"id":"https://openalex.org/subfields/2711","display_name":"Emergency Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/categorical-variable","display_name":"Categorical variable","score":0.7036983966827393},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.5884374380111694},{"id":"https://openalex.org/keywords/reverse-transcriptase","display_name":"Reverse transcriptase","score":0.5664404034614563},{"id":"https://openalex.org/keywords/nucleoside-reverse-transcriptase-inhibitor","display_name":"Nucleoside Reverse Transcriptase Inhibitor","score":0.5489927530288696},{"id":"https://openalex.org/keywords/hiv-drug-resistance","display_name":"HIV drug resistance","score":0.5334973931312561},{"id":"https://openalex.org/keywords/drug-resistance","display_name":"Drug resistance","score":0.5079408288002014},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5012052059173584},{"id":"https://openalex.org/keywords/integrase-inhibitor","display_name":"Integrase inhibitor","score":0.44885632395744324},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.440274178981781},{"id":"https://openalex.org/keywords/reverse-transcriptase-inhibitor","display_name":"Reverse-transcriptase inhibitor","score":0.4218469560146332},{"id":"https://openalex.org/keywords/jaccard-index","display_name":"Jaccard index","score":0.41925060749053955},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37365037202835083},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36742478609085083},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.3612428307533264},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.348449170589447},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3449326753616333},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.3030344545841217},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2807592749595642},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.274535596370697},{"id":"https://openalex.org/keywords/antiretroviral-therapy","display_name":"Antiretroviral therapy","score":0.19391706585884094},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.18604913353919983},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.17139914631843567},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.14706569910049438},{"id":"https://openalex.org/keywords/viral-load","display_name":"Viral load","score":0.12959495186805725},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11519604921340942}],"concepts":[{"id":"https://openalex.org/C5274069","wikidata":"https://www.wikidata.org/wiki/Q2285707","display_name":"Categorical variable","level":2,"score":0.7036983966827393},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.5884374380111694},{"id":"https://openalex.org/C156719811","wikidata":"https://www.wikidata.org/wiki/Q28774","display_name":"Reverse transcriptase","level":4,"score":0.5664404034614563},{"id":"https://openalex.org/C2909970146","wikidata":"https://www.wikidata.org/wiki/Q421559","display_name":"Nucleoside Reverse Transcriptase Inhibitor","level":5,"score":0.5489927530288696},{"id":"https://openalex.org/C2778451633","wikidata":"https://www.wikidata.org/wiki/Q5629934","display_name":"HIV drug resistance","level":5,"score":0.5334973931312561},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.5079408288002014},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5012052059173584},{"id":"https://openalex.org/C2777302000","wikidata":"https://www.wikidata.org/wiki/Q412251","display_name":"Integrase inhibitor","level":5,"score":0.44885632395744324},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.440274178981781},{"id":"https://openalex.org/C2777351918","wikidata":"https://www.wikidata.org/wiki/Q421559","display_name":"Reverse-transcriptase inhibitor","level":5,"score":0.4218469560146332},{"id":"https://openalex.org/C203519979","wikidata":"https://www.wikidata.org/wiki/Q865360","display_name":"Jaccard index","level":3,"score":0.41925060749053955},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37365037202835083},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36742478609085083},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.3612428307533264},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.348449170589447},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3449326753616333},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3030344545841217},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2807592749595642},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.274535596370697},{"id":"https://openalex.org/C2993143319","wikidata":"https://www.wikidata.org/wiki/Q583050","display_name":"Antiretroviral therapy","level":4,"score":0.19391706585884094},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.18604913353919983},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.17139914631843567},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.14706569910049438},{"id":"https://openalex.org/C142462285","wikidata":"https://www.wikidata.org/wiki/Q2528140","display_name":"Viral load","level":3,"score":0.12959495186805725},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11519604921340942}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/s12859-019-2991-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2991-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2991-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31362714","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31362714","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:recercat.cat:2072/361691","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/168438","pdf_url":null,"source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:upcommons.upc.edu:2117/168438","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/168438","pdf_url":null,"source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:ddd.uab.cat:223474","is_oa":true,"landing_page_url":"https://ddd.uab.cat/record/223474","pdf_url":"https://ddd.uab.cat/record/223474","source":{"id":"https://openalex.org/S4306400380","display_name":"Dip\u00f2sit Digital de Documents de la UAB (Universitat Aut\u00f2noma de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123044942","host_organization_name":"Universitat Aut\u00f2noma de Barcelona","host_organization_lineage":["https://openalex.org/I123044942"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:digital.csic.es:10261/207151","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/207151","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:dnet:uabarcelona_::1f9fad8a33e5a95892be6148ecce9a30","is_oa":true,"landing_page_url":"http://ddd.uab.cat/record/223474","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:58502a7ba1214e4e927f6a4139d3a6e5","is_oa":true,"landing_page_url":"https://doaj.org/article/58502a7ba1214e4e927f6a4139d3a6e5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-13 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5627536","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6668108","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2991-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2991-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2991-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.9200000166893005,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G18837533","display_name":null,"funder_award_id":"BFU2016-77236-P","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G2310257470","display_name":null,"funder_award_id":"AGL2016-78709-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G46076380","display_name":null,"funder_award_id":"SEV-2015-0533","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G619221736","display_name":null,"funder_award_id":"SEV-2015-0533","funder_id":"https://openalex.org/F4320334830","funder_display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca"},{"id":"https://openalex.org/G7232289445","display_name":null,"funder_award_id":"SEV-2015-0533","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G8424231853","display_name":null,"funder_award_id":"2018FI_B1_00189","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G8891178275","display_name":null,"funder_award_id":"SEV-2015-0533","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334830","display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca","ror":"https://ror.org/01n4pqe45"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2966230873.pdf","grobid_xml":"https://content.openalex.org/works/W2966230873.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W152553284","https://openalex.org/W1542652324","https://openalex.org/W1832057903","https://openalex.org/W1988215875","https://openalex.org/W1999429374","https://openalex.org/W2014619388","https://openalex.org/W2021733025","https://openalex.org/W2040833276","https://openalex.org/W2054688372","https://openalex.org/W2069572775","https://openalex.org/W2101885498","https://openalex.org/W2128685318","https://openalex.org/W2136431383","https://openalex.org/W2143289744","https://openalex.org/W2154348803","https://openalex.org/W2187165435","https://openalex.org/W2288331077","https://openalex.org/W2507538451","https://openalex.org/W2509030308","https://openalex.org/W2565185351","https://openalex.org/W2625924212","https://openalex.org/W2747271593","https://openalex.org/W2762580041","https://openalex.org/W2871604533","https://openalex.org/W2898110234","https://openalex.org/W2912368193","https://openalex.org/W4244138569","https://openalex.org/W6686825414"],"related_works":["https://openalex.org/W4301626772","https://openalex.org/W74141627","https://openalex.org/W2032735881","https://openalex.org/W2017995451","https://openalex.org/W2056659604","https://openalex.org/W2149148148","https://openalex.org/W2111280544","https://openalex.org/W2189516800","https://openalex.org/W2259751832","https://openalex.org/W2519640715"],"abstract_inverted_index":{"BACKGROUND:":[0],"Antiretroviral":[1],"drugs":[2,116],"are":[3,70,76,294],"a":[4],"very":[5,40,71],"effective":[6],"therapy":[7],"against":[8,146],"HIV":[9,17,82],"infection.":[10],"However,":[11],"the":[12,19,28,52,92,110,168,173,183,197,210,214,217,224,235,239,242,250,258,262,265,276,283],"high":[13],"mutation":[14],"rate":[15],"of":[16,21,54,95,117,161,196,213,219,230,244,253,278],"permits":[18],"emergence":[20],"variants":[22,37],"that":[23,103,203,205],"can":[24],"be":[25,273],"resistant":[26],"to":[27,34,59,73,78,90,109,272,275],"drug":[29,32,61],"treatment.":[30,46],"Predicting":[31],"resistance":[33,62],"previously":[35],"unobserved":[36],"is":[38,101],"therefore":[39],"important":[41],"for":[42,193],"an":[43],"optimum":[44],"medical":[45],"In":[47,241],"this":[48],"paper,":[49],"we":[50],"propose":[51],"use":[53],"weighted":[55,189],"categorical":[56,140,211],"kernel":[57,68,141,150,181],"functions":[58,69,151],"predict":[60],"from":[63,172],"virus":[64],"sequence":[65],"data.":[66],"These":[67],"simple":[72],"implement":[74],"and":[75,89,131,144,153,155,216,292],"able":[77],"take":[79,206],"into":[80,207],"account":[81,208],"data":[83,215],"particularities,":[84],"such":[85],"as":[86,99,280],"allele":[87],"mixtures,":[88],"weigh":[91],"different":[93],"importance":[94,252],"each":[96,254],"protein":[97,236],"residue,":[98],"it":[100],"known":[102],"not":[104],"all":[105],"positions":[106],"contribute":[107],"equally":[108],"resistance.":[111],"RESULTS:":[112],"We":[113,137],"analyzed":[114],"21":[115,198],"four":[118],"classes:":[119],"protease":[120,266],"inhibitors":[121,124,129,135],"(PI),":[122],"integrase":[123],"(INI),":[125],"nucleoside":[126],"reverse":[127,133,245],"transcriptase":[128,134],"(NRTI)":[130],"non-nucleoside":[132],"(NNRTI).":[136],"compared":[138],"two":[139,147],"functions,":[142],"Overlap":[143],"Jaccard,":[145],"well-known":[148],"noncategorical":[149],"(Linear":[152],"RBF)":[154],"Random":[156],"Forest":[157],"(RF).":[158],"Weighted":[159],"versions":[160],"these":[162],"kernels":[163,204],"were":[164,170],"also":[165],"considered,":[166],"where":[167],"weights":[169,232,247],"obtained":[171],"RF":[174],"decrease":[175],"in":[176,187,223,249,264],"node":[177],"impurity.":[178],"The":[179,228],"Jaccard":[180],"was":[182,267],"best":[184,225],"method,":[185],"either":[186],"its":[188],"or":[190],"unweighted":[191],"form,":[192],"20":[194],"out":[195],"drugs.":[199],"CONCLUSIONS:":[200],"Results":[201],"show":[202],"both":[209],"nature":[212],"presence":[218],"mixtures":[220],"consistently":[221],"result":[222],"prediction":[226,259],"model.":[227],"advantage":[229],"including":[231],"depended":[233],"on":[234],"targeted":[237],"by":[238,282],"drug.":[240],"case":[243],"transcriptase,":[246],"based":[248],"relative":[251],"position":[255],"clearly":[256],"increased":[257],"performance,":[260],"while":[261],"improvement":[263],"much":[268],"smaller.":[269],"This":[270],"seems":[271],"related":[274],"distribution":[277],"weights,":[279],"measured":[281],"Gini":[284],"index.":[285],"All":[286],"methods":[287],"described,":[288],"together":[289],"with":[290],"documentation":[291],"examples,":[293],"freely":[295],"available":[296],"at":[297],"https://bitbucket.org/elies_ramon/catkern.":[298]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
