{"id":"https://openalex.org/W2954442758","doi":"https://doi.org/10.1186/s12859-019-2914-2","title":"edge2vec: Representation learning using edge semantics for biomedical knowledge discovery","display_name":"edge2vec: Representation learning using edge semantics for biomedical knowledge discovery","publication_year":2019,"publication_date":"2019-06-10","ids":{"openalex":"https://openalex.org/W2954442758","doi":"https://doi.org/10.1186/s12859-019-2914-2","mag":"2954442758","pmid":"https://pubmed.ncbi.nlm.nih.gov/31238875"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2914-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2914-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2914-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2914-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101631994","display_name":"Zheng Gao","orcid":"https://orcid.org/0000-0001-5541-8840"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zheng Gao","raw_affiliation_strings":["School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103176271","display_name":"Gang Fu","orcid":"https://orcid.org/0000-0003-2183-965X"},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gang Fu","raw_affiliation_strings":["Microsoft Corporation, Seattle, Washington, USA"],"affiliations":[{"raw_affiliation_string":"Microsoft Corporation, Seattle, Washington, USA","institution_ids":["https://openalex.org/I1290206253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112883084","display_name":"Chunping Ouyang","orcid":"https://orcid.org/0000-0002-2154-0079"},"institutions":[{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunping Ouyang","raw_affiliation_strings":["University of South China, Hengyang, Hunan, China"],"affiliations":[{"raw_affiliation_string":"University of South China, Hengyang, Hunan, China","institution_ids":["https://openalex.org/I91935597"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115501011","display_name":"Satoshi Tsutsui","orcid":"https://orcid.org/0000-0001-8003-2616"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Satoshi Tsutsui","raw_affiliation_strings":["School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085665917","display_name":"Xiaozhong Liu","orcid":"https://orcid.org/0000-0001-7064-4651"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaozhong Liu","raw_affiliation_strings":["School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076911664","display_name":"Jeremy J. Yang","orcid":"https://orcid.org/0000-0002-1476-6192"},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]},{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy Yang","raw_affiliation_strings":["Microsoft Corporation, Seattle, Washington, USA","School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA","School of Medicine, University of New Mexico, Albuquerque, NM, USA"],"affiliations":[{"raw_affiliation_string":"Microsoft Corporation, Seattle, Washington, USA","institution_ids":["https://openalex.org/I1290206253"]},{"raw_affiliation_string":"School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"School of Medicine, University of New Mexico, Albuquerque, NM, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090832863","display_name":"Christopher Gessner","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Gessner","raw_affiliation_strings":["School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035423922","display_name":"Brian Foote","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brian Foote","raw_affiliation_strings":["Data2Discovery, Inc., Bloomington, IN, USA"],"affiliations":[{"raw_affiliation_string":"Data2Discovery, Inc., Bloomington, IN, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002092202","display_name":"David Wild","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Wild","raw_affiliation_strings":["Data2Discovery, Inc., Bloomington, IN, USA","School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA"],"affiliations":[{"raw_affiliation_string":"Data2Discovery, Inc., Bloomington, IN, USA","institution_ids":[]},{"raw_affiliation_string":"School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047170063","display_name":"Ying Ding","orcid":"https://orcid.org/0000-0003-2567-2009"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Ding","raw_affiliation_strings":["Data2Discovery, Inc., Bloomington, IN, USA","School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA"],"affiliations":[{"raw_affiliation_string":"Data2Discovery, Inc., Bloomington, IN, USA","institution_ids":[]},{"raw_affiliation_string":"School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101958764","display_name":"Qi Yu","orcid":"https://orcid.org/0000-0001-7796-6899"},"institutions":[{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qi Yu","raw_affiliation_strings":["School of Management, Shanxi Medical University, Taiyuan, Shanxi, China. yuqi@sxmu.edu.cn","School of Management, Shanxi Medical University, Taiyuan, Shanxi, China"],"affiliations":[{"raw_affiliation_string":"School of Management, Shanxi Medical University, Taiyuan, Shanxi, China. yuqi@sxmu.edu.cn","institution_ids":["https://openalex.org/I17721919"]},{"raw_affiliation_string":"School of Management, Shanxi Medical University, Taiyuan, Shanxi, China","institution_ids":["https://openalex.org/I17721919"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5101958764"],"corresponding_institution_ids":["https://openalex.org/I17721919"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.0059,"has_fulltext":false,"cited_by_count":62,"citation_normalized_percentile":{"value":0.92249612,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"306","last_page":"306"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6912549734115601},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6150031685829163},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.511333167552948},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.4911613166332245},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4615177810192108},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.45705553889274597},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4396505653858185},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4305275082588196},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4295427203178406},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3952759802341461},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10690388083457947}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6912549734115601},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6150031685829163},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.511333167552948},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4911613166332245},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4615177810192108},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.45705553889274597},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4396505653858185},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4305275082588196},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4295427203178406},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3952759802341461},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10690388083457947},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-019-2914-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2914-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2914-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31238875","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31238875","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:072b4e415f14457ebcfb4d03f84e5a82","is_oa":true,"landing_page_url":"https://doaj.org/article/072b4e415f14457ebcfb4d03f84e5a82","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-15 (2019)","raw_type":"article"},{"id":"pmh:oai:iu.tind.io:2407","is_oa":false,"landing_page_url":"http://iu.tind.io/record/2407","pdf_url":null,"source":{"id":"https://openalex.org/S4306402656","display_name":"IUScholarWorks Open (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://iu.tind.io/record/2407","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6593489","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6593489","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2914-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2914-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2914-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1889733483","display_name":null,"funder_award_id":"71573162","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2954442758.pdf","grobid_xml":"https://content.openalex.org/works/W2954442758.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W103340358","https://openalex.org/W179875071","https://openalex.org/W287609105","https://openalex.org/W1497435662","https://openalex.org/W1614298861","https://openalex.org/W1615991656","https://openalex.org/W1888005072","https://openalex.org/W2001141328","https://openalex.org/W2010187764","https://openalex.org/W2019543926","https://openalex.org/W2037933327","https://openalex.org/W2053186076","https://openalex.org/W2063149926","https://openalex.org/W2090891622","https://openalex.org/W2091110954","https://openalex.org/W2117130368","https://openalex.org/W2138399168","https://openalex.org/W2140376886","https://openalex.org/W2153959628","https://openalex.org/W2154851992","https://openalex.org/W2155958387","https://openalex.org/W2156718197","https://openalex.org/W2161984370","https://openalex.org/W2168627253","https://openalex.org/W2171928131","https://openalex.org/W2187413858","https://openalex.org/W2250539671","https://openalex.org/W2336207313","https://openalex.org/W2470695604","https://openalex.org/W2550323195","https://openalex.org/W2734806099","https://openalex.org/W2743104969","https://openalex.org/W2767962252","https://openalex.org/W2810148741","https://openalex.org/W2949885897","https://openalex.org/W2950133940","https://openalex.org/W2962756421","https://openalex.org/W2963224980","https://openalex.org/W3100330855","https://openalex.org/W3104097132","https://openalex.org/W3105705953","https://openalex.org/W4232932184","https://openalex.org/W4252316495","https://openalex.org/W6610518301","https://openalex.org/W6680832709"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2037549926","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W2419146053","https://openalex.org/W4388890789","https://openalex.org/W2088247287","https://openalex.org/W4390871823"],"abstract_inverted_index":{"We":[0],"propose":[1],"this":[2],"method":[3],"for":[4],"its":[5],"added":[6],"value":[7],"relative":[8],"to":[9],"existing":[10],"graph":[11],"analytical":[12],"methodology,":[13],"and":[14],"in":[15],"the":[16],"real":[17],"world":[18],"context":[19],"of":[20],"biomedical":[21],"knowledge":[22],"discovery":[23],"applicability.":[24]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
