{"id":"https://openalex.org/W2946172084","doi":"https://doi.org/10.1186/s12859-019-2870-x","title":"anamiR: integrated analysis of MicroRNA and gene expression profiling","display_name":"anamiR: integrated analysis of MicroRNA and gene expression profiling","publication_year":2019,"publication_date":"2019-05-14","ids":{"openalex":"https://openalex.org/W2946172084","doi":"https://doi.org/10.1186/s12859-019-2870-x","mag":"2946172084","pmid":"https://pubmed.ncbi.nlm.nih.gov/31088348"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2870-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2870-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2870-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2870-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001941068","display_name":"Ti-Tai Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ti-Tai Wang","raw_affiliation_strings":["Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan"],"affiliations":[{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047428438","display_name":"Chien\u2010Yueh Lee","orcid":"https://orcid.org/0000-0002-4304-974X"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chien-Yueh Lee","raw_affiliation_strings":["Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan"],"affiliations":[{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069812755","display_name":"Liang\u2010Chuan Lai","orcid":"https://orcid.org/0000-0002-3913-5338"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Liang-Chuan Lai","raw_affiliation_strings":["Graduate Institute of Physiology, National Taiwan University, Taipei, 10051, Taiwan"],"affiliations":[{"raw_affiliation_string":"Graduate Institute of Physiology, National Taiwan University, Taipei, 10051, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008173365","display_name":"Mong\u2010Hsun Tsai","orcid":"https://orcid.org/0000-0001-8777-5818"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210128122","display_name":"Development Center for Biotechnology","ror":"https://ror.org/02ys1c285","country_code":"TW","type":"nonprofit","lineage":["https://openalex.org/I4210128122"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Mong-Hsun Tsai","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, 10055, Taiwan","Center for Biotechnology, National Taiwan University, Taipei, 10672, Taiwan","Institute of Biotechnology, National Taiwan University, Taipei, 10672, Taiwan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, 10055, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Center for Biotechnology, National Taiwan University, Taipei, 10672, Taiwan","institution_ids":["https://openalex.org/I4210128122","https://openalex.org/I16733864"]},{"raw_affiliation_string":"Institute of Biotechnology, National Taiwan University, Taipei, 10672, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025739002","display_name":"Tzu\u2010Pin Lu","orcid":"https://orcid.org/0000-0003-3697-0386"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Tzu-Pin Lu","raw_affiliation_strings":["Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, 10055, Taiwan. tplu@ntu.edu.tw","Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, 10055, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, 10055, Taiwan. tplu@ntu.edu.tw","institution_ids":[]},{"raw_affiliation_string":"Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, 10055, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062893898","display_name":"Eric Y. Chuang","orcid":"https://orcid.org/0000-0003-2530-0096"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Eric Y. Chuang","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, 10055, Taiwan. chuangey@ntu.edu.tw","Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan. chuangey@ntu.edu.tw","Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, 10055, Taiwan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, 10055, Taiwan. chuangey@ntu.edu.tw","institution_ids":[]},{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, 10617, Taiwan. chuangey@ntu.edu.tw","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, 10055, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5025739002"],"corresponding_institution_ids":["https://openalex.org/I16733864"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.222,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.75352379,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"239","last_page":"239"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.8613812327384949},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.8171802759170532},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.7323620319366455},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6532236933708191},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.6076440811157227},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5233139991760254},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4563297927379608},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.4340245723724365},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4245010018348694},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38916605710983276},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37062862515449524},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23039108514785767}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.8613812327384949},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.8171802759170532},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.7323620319366455},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6532236933708191},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.6076440811157227},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5233139991760254},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4563297927379608},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4340245723724365},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4245010018348694},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38916605710983276},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37062862515449524},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23039108514785767}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-2870-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2870-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2870-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31088348","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31088348","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:dc16970d4ec6452ba122e8004b3f08e9","is_oa":true,"landing_page_url":"https://doaj.org/article/dc16970d4ec6452ba122e8004b3f08e9","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-7 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6518761","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6518761","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2870-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2870-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2870-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6338824196","display_name":null,"funder_award_id":"GTZ300","funder_id":"https://openalex.org/F4320323900","funder_display_name":"National Taiwan University"},{"id":"https://openalex.org/G7937749930","display_name":null,"funder_award_id":"106R8400","funder_id":"https://openalex.org/F4320323900","funder_display_name":"National Taiwan University"}],"funders":[{"id":"https://openalex.org/F4320323900","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2946172084.pdf","grobid_xml":"https://content.openalex.org/works/W2946172084.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1924431080","https://openalex.org/W2003176492","https://openalex.org/W2003816656","https://openalex.org/W2006770045","https://openalex.org/W2028133290","https://openalex.org/W2031014255","https://openalex.org/W2031877498","https://openalex.org/W2044832480","https://openalex.org/W2049702532","https://openalex.org/W2060880575","https://openalex.org/W2070412447","https://openalex.org/W2070571588","https://openalex.org/W2072246786","https://openalex.org/W2083381199","https://openalex.org/W2105197182","https://openalex.org/W2107607313","https://openalex.org/W2108929261","https://openalex.org/W2123060905","https://openalex.org/W2134118500","https://openalex.org/W2140132747","https://openalex.org/W2146276081","https://openalex.org/W2148512186","https://openalex.org/W2149785901","https://openalex.org/W2160387598","https://openalex.org/W2166240615","https://openalex.org/W2168173728","https://openalex.org/W2170446948","https://openalex.org/W2171398108","https://openalex.org/W2172196250","https://openalex.org/W2174734928","https://openalex.org/W2179438025","https://openalex.org/W2190366779","https://openalex.org/W2192246607","https://openalex.org/W2222732652","https://openalex.org/W2293178353","https://openalex.org/W2319335706","https://openalex.org/W2397979235","https://openalex.org/W2547539064","https://openalex.org/W2560678530","https://openalex.org/W2903730942","https://openalex.org/W2907305901","https://openalex.org/W6678274143"],"related_works":["https://openalex.org/W2149532639","https://openalex.org/W2528376594","https://openalex.org/W2788291299","https://openalex.org/W2005263238","https://openalex.org/W2069695727","https://openalex.org/W142111944","https://openalex.org/W1996185163","https://openalex.org/W2594878638","https://openalex.org/W2084813257","https://openalex.org/W2045929470"],"abstract_inverted_index":{"The":[0,33],"anamiR":[1,40],"package":[2,23,41],"is":[3],"effective":[4],"for":[5],"an":[6],"integrated":[7],"analysis":[8],"of":[9,38],"both":[10],"RNA":[11],"and":[12,19,30,36],"microRNA":[13],"profiles.":[14],"By":[15],"characterizing":[16],"biological":[17,29],"functions":[18],"signaling":[20],"pathways,":[21],"this":[22],"helps":[24],"identify":[25],"dysregulated":[26],"genes/miRNAs":[27],"from":[28],"medical":[31],"experiments.":[32],"source":[34],"code":[35],"manual":[37],"the":[39],"are":[42],"freely":[43],"available":[44],"at":[45],"https://bioconductor.org/packages/release/bioc/html/anamiR.html":[46],".":[47]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
