{"id":"https://openalex.org/W2956976583","doi":"https://doi.org/10.1186/s12859-019-2867-5","title":"PEPOP 2.0: new approaches to mimic non-continuous epitopes","display_name":"PEPOP 2.0: new approaches to mimic non-continuous epitopes","publication_year":2019,"publication_date":"2019-07-11","ids":{"openalex":"https://openalex.org/W2956976583","doi":"https://doi.org/10.1186/s12859-019-2867-5","mag":"2956976583","pmid":"https://pubmed.ncbi.nlm.nih.gov/31296178"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2867-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2867-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2867-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2867-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014602395","display_name":"Vincent Demolombe","orcid":"https://orcid.org/0000-0003-0517-327X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210165050","display_name":"Institut des Sciences des Plantes de Montpellier","ror":"https://ror.org/05r332y60","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210096427","https://openalex.org/I4210117091","https://openalex.org/I4210165050","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Demolombe","raw_affiliation_strings":["BPMP, CNRS, INRA, Montpellier SupAgro, Univ Montpellier, Montpellier, France"],"affiliations":[{"raw_affiliation_string":"BPMP, CNRS, INRA, Montpellier SupAgro, Univ Montpellier, Montpellier, France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I4210165050","https://openalex.org/I19894307","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024376929","display_name":"Alexandre G. de Brevern","orcid":"https://orcid.org/0000-0001-7112-5626"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210092978","display_name":"Laboratory of Excellence GR-Ex","ror":"https://ror.org/00ezvft90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210092978"]},{"id":"https://openalex.org/I4210144910","display_name":"FHU Neurovasc","ror":"https://ror.org/058xkam71","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210144910"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexandre G. de Brevern","raw_affiliation_strings":["INSERM UMR-S 1134, DSIMB, F-75739, Paris, France","INTS, F-75739, Paris, France","Laboratoire d'Excellence GR-Ex, F75737, Paris, France","Univ Paris Diderot, Sorbonne Paris Cit\u00e9, Univ de la R\u00e9union, Univ des Antilles, UMR 1134, F-75739, Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM UMR-S 1134, DSIMB, F-75739, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"INTS, F-75739, Paris, France","institution_ids":["https://openalex.org/I4210144910"]},{"raw_affiliation_string":"Laboratoire d'Excellence GR-Ex, F75737, Paris, France","institution_ids":["https://openalex.org/I4210092978"]},{"raw_affiliation_string":"Univ Paris Diderot, Sorbonne Paris Cit\u00e9, Univ de la R\u00e9union, Univ des Antilles, UMR 1134, F-75739, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I169173203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055089076","display_name":"Liza Felicori","orcid":"https://orcid.org/0000-0002-3240-9658"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Liza Felicori","raw_affiliation_strings":["Departamento de Bioqu\u00edmica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil"],"affiliations":[{"raw_affiliation_string":"Departamento de Bioqu\u00edmica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077452494","display_name":"Christophe Nguyen","orcid":"https://orcid.org/0000-0003-4539-1677"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe NGuyen","raw_affiliation_strings":["Sys2Diag UMR 9005 CNRS/ALCEDIAG, Complex System Modeling and Engineering for Diagnosis, Cap delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re CS 61003, 34184, Montpellier Cedex 4, France"],"affiliations":[{"raw_affiliation_string":"Sys2Diag UMR 9005 CNRS/ALCEDIAG, Complex System Modeling and Engineering for Diagnosis, Cap delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re CS 61003, 34184, Montpellier Cedex 4, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057145276","display_name":"Ricardo Andrez Machado\u2010de\u2010\u00c1vila","orcid":"https://orcid.org/0000-0002-1303-0490"},"institutions":[{"id":"https://openalex.org/I77063049","display_name":"Universidade do Extremo Sul Catarinense","ror":"https://ror.org/052z2q786","country_code":"BR","type":"education","lineage":["https://openalex.org/I77063049"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ricardo Andrez Machado de Avila","raw_affiliation_strings":["Programa de P\u00f3s-Gradua\u00e7\u00e3o em Ci\u00eancias da Sa\u00fade, Universidade do Extremo Sul Catarinense, Crici\u00fama, Santa Catarina, 88806-000, Brazil"],"affiliations":[{"raw_affiliation_string":"Programa de P\u00f3s-Gradua\u00e7\u00e3o em Ci\u00eancias da Sa\u00fade, Universidade do Extremo Sul Catarinense, Crici\u00fama, Santa Catarina, 88806-000, Brazil","institution_ids":["https://openalex.org/I77063049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103826322","display_name":"Lionel Valera","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108395","display_name":"Bio-Rad (France)","ror":"https://ror.org/01yv86q51","country_code":"FR","type":"company","lineage":["https://openalex.org/I1327359573","https://openalex.org/I4210108395"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lionel Valera","raw_affiliation_strings":["Bio-Rad Laboratories, 1682 Rue de la Valsi\u00e8re CS 61003, 34184, Montpellier CEDEX 04, France"],"affiliations":[{"raw_affiliation_string":"Bio-Rad Laboratories, 1682 Rue de la Valsi\u00e8re CS 61003, 34184, Montpellier CEDEX 04, France","institution_ids":["https://openalex.org/I4210108395"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109290652","display_name":"B\u00e9n\u00e9dicte Jardin-Watelet","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108395","display_name":"Bio-Rad (France)","ror":"https://ror.org/01yv86q51","country_code":"FR","type":"company","lineage":["https://openalex.org/I1327359573","https://openalex.org/I4210108395"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"B\u00e9n\u00e9dicte Jardin-Watelet","raw_affiliation_strings":["Bio-Rad Laboratories, 1682 Rue de la Valsi\u00e8re CS 61003, 34184, Montpellier CEDEX 04, France"],"affiliations":[{"raw_affiliation_string":"Bio-Rad Laboratories, 1682 Rue de la Valsi\u00e8re CS 61003, 34184, Montpellier CEDEX 04, France","institution_ids":["https://openalex.org/I4210108395"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027811481","display_name":"G\u00e9raldine Lavigne","orcid":null},"institutions":[{"id":"https://openalex.org/I66456633","display_name":"Universit\u00e9 de N\u00eemes","ror":"https://ror.org/044t4x544","country_code":"FR","type":"education","lineage":["https://openalex.org/I66456633"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"G\u00e9raldine Lavigne","raw_affiliation_strings":["Department of Haematology, University Hospital, N\u00eemes, France"],"affiliations":[{"raw_affiliation_string":"Department of Haematology, University Hospital, N\u00eemes, France","institution_ids":["https://openalex.org/I66456633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088227032","display_name":"Aur\u00e9lien Lebreton","orcid":"https://orcid.org/0000-0002-1650-0427"},"institutions":[{"id":"https://openalex.org/I4210128870","display_name":"Centre Hospitalier Universitaire de Clermont-Ferrand","ror":"https://ror.org/02tcf7a68","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210128870"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Aur\u00e9lien Lebreton","raw_affiliation_strings":["Service d'h\u00e9matologie biologique, CHU Clermont-Ferrand, Clermont-Ferrand, France"],"affiliations":[{"raw_affiliation_string":"Service d'h\u00e9matologie biologique, CHU Clermont-Ferrand, Clermont-Ferrand, France","institution_ids":["https://openalex.org/I4210128870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070559991","display_name":"Franck Molina","orcid":"https://orcid.org/0000-0003-4181-0854"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Franck Molina","raw_affiliation_strings":["Sys2Diag UMR 9005 CNRS/ALCEDIAG, Complex System Modeling and Engineering for Diagnosis, Cap delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re CS 61003, 34184, Montpellier Cedex 4, France"],"affiliations":[{"raw_affiliation_string":"Sys2Diag UMR 9005 CNRS/ALCEDIAG, Complex System Modeling and Engineering for Diagnosis, Cap delta/Parc Eurom\u00e9decine, 1682 rue de la Valsi\u00e8re CS 61003, 34184, Montpellier Cedex 4, France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006347118","display_name":"Violaine Moreau","orcid":"https://orcid.org/0000-0001-8298-9999"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210100279","display_name":"Centre de Biologie Structurale","ror":"https://ror.org/0189yvq06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I19894307","https://openalex.org/I4210100279"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Violaine Moreau","raw_affiliation_strings":["Centre de Biochimie Structurale (CBS), INSERM, CNRS, Univ Montpellier, 29, route de Navacelles, 34090, Montpellier, France. violaine.moreau@cbs.cnrs.fr","Centre de Biochimie Structurale (CBS), INSERM, CNRS, Univ Montpellier, 29, route de Navacelles, 34090, Montpellier, France"],"affiliations":[{"raw_affiliation_string":"Centre de Biochimie Structurale (CBS), INSERM, CNRS, Univ Montpellier, 29, route de Navacelles, 34090, Montpellier, France. violaine.moreau@cbs.cnrs.fr","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210100279"]},{"raw_affiliation_string":"Centre de Biochimie Structurale (CBS), INSERM, CNRS, Univ Montpellier, 29, route de Navacelles, 34090, Montpellier, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210100279"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5006347118"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I19894307","https://openalex.org/I4210100279"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9447,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.7457937,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"20","issue":"1","first_page":"387","last_page":"387"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9572250843048096},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6844974160194397},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6634151339530945},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5212541222572327},{"id":"https://openalex.org/keywords/linear-epitope","display_name":"Linear epitope","score":0.45772701501846313},{"id":"https://openalex.org/keywords/epitope-mapping","display_name":"Epitope mapping","score":0.4462750554084778},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3889092206954956},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30424392223358154},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.20010533928871155},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13754984736442566},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12465813755989075}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9572250843048096},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6844974160194397},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6634151339530945},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5212541222572327},{"id":"https://openalex.org/C78598654","wikidata":"https://www.wikidata.org/wiki/Q17140316","display_name":"Linear epitope","level":4,"score":0.45772701501846313},{"id":"https://openalex.org/C2781241564","wikidata":"https://www.wikidata.org/wiki/Q1347450","display_name":"Epitope mapping","level":4,"score":0.4462750554084778},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3889092206954956},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30424392223358154},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.20010533928871155},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13754984736442566},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12465813755989075}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007106","descriptor_name":"Immune Sera","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007106","descriptor_name":"Immune Sera","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007106","descriptor_name":"Immune Sera","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-019-2867-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2867-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2867-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31296178","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31296178","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-02277257v1","is_oa":true,"landing_page_url":"https://hal.science/hal-02277257","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2019, 20 (1), &#x27E8;10.1186/s12859-019-2867-5&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:HAL:hal-04725196v1","is_oa":false,"landing_page_url":"https://hal.science/hal-04725196","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2019, 20 (1), pp.387. &#x27E8;10.1186/s12859-019-2867-5&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:ff515995205d4f2abb939e660c9c70f5","is_oa":true,"landing_page_url":"https://doaj.org/article/ff515995205d4f2abb939e660c9c70f5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-14 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6625012","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6625012","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2867-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2867-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2867-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G120275728","display_name":null,"funder_award_id":"Univer","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1241245949","display_name":null,"funder_award_id":"ANR-11-IDEX-0005-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2312321515","display_name":null,"funder_award_id":"ANR-11-LABX-0051","funder_id":"https://openalex.org/F4320323399","funder_display_name":"Universit\u00e9 Paris Diderot"},{"id":"https://openalex.org/G3054294689","display_name":null,"funder_award_id":"11-IDEX-0005-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3331681876","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3601516360","display_name":null,"funder_award_id":"Brazil","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3807293409","display_name":null,"funder_award_id":"ANR-11-LABX-00","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4507058828","display_name":null,"funder_award_id":"ANR-11-LABX-0051","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4774453313","display_name":null,"funder_award_id":"IDEX-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4866930200","display_name":null,"funder_award_id":"ANR-11-IDEX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G692611148","display_name":null,"funder_award_id":"Brazil","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G7614337225","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320322980","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais"},{"id":"https://openalex.org/G7823808512","display_name":null,"funder_award_id":"ANR-11-IDEX-000","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8336719376","display_name":null,"funder_award_id":"ANR-11-IDEX-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8357976619","display_name":null,"funder_award_id":"FAPEMIG","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322980","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais","ror":"https://ror.org/00nc55f03"},{"id":"https://openalex.org/F4320323399","display_name":"Universit\u00e9 Paris Diderot","ror":"https://ror.org/02n7qrg46"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2956976583.pdf","grobid_xml":"https://content.openalex.org/works/W2956976583.grobid-xml"},"referenced_works_count":82,"referenced_works":["https://openalex.org/W19232741","https://openalex.org/W70790455","https://openalex.org/W116322834","https://openalex.org/W160255425","https://openalex.org/W1484475662","https://openalex.org/W1520434148","https://openalex.org/W1697889365","https://openalex.org/W1817903931","https://openalex.org/W1972165200","https://openalex.org/W1976801077","https://openalex.org/W1980471592","https://openalex.org/W1983113740","https://openalex.org/W1985153601","https://openalex.org/W1989375126","https://openalex.org/W1990675829","https://openalex.org/W1991701295","https://openalex.org/W1995721354","https://openalex.org/W2004360551","https://openalex.org/W2005249128","https://openalex.org/W2006315372","https://openalex.org/W2013029770","https://openalex.org/W2014709498","https://openalex.org/W2017880958","https://openalex.org/W2021571411","https://openalex.org/W2022257442","https://openalex.org/W2031772330","https://openalex.org/W2037455416","https://openalex.org/W2048287651","https://openalex.org/W2051710717","https://openalex.org/W2053418558","https://openalex.org/W2059178238","https://openalex.org/W2060907336","https://openalex.org/W2061365506","https://openalex.org/W2068997255","https://openalex.org/W2071477986","https://openalex.org/W2072542124","https://openalex.org/W2072854137","https://openalex.org/W2075770210","https://openalex.org/W2081217040","https://openalex.org/W2084694925","https://openalex.org/W2085168389","https://openalex.org/W2085453001","https://openalex.org/W2086738109","https://openalex.org/W2087202599","https://openalex.org/W2091565674","https://openalex.org/W2091852797","https://openalex.org/W2095104107","https://openalex.org/W2096960798","https://openalex.org/W2099415668","https://openalex.org/W2099451628","https://openalex.org/W2106150646","https://openalex.org/W2114487849","https://openalex.org/W2125508691","https://openalex.org/W2125606569","https://openalex.org/W2133179083","https://openalex.org/W2136701955","https://openalex.org/W2137575262","https://openalex.org/W2140468230","https://openalex.org/W2140971235","https://openalex.org/W2149458203","https://openalex.org/W2149984099","https://openalex.org/W2150537020","https://openalex.org/W2155726970","https://openalex.org/W2158781610","https://openalex.org/W2158899863","https://openalex.org/W2165224041","https://openalex.org/W2167934144","https://openalex.org/W2168434087","https://openalex.org/W2172770250","https://openalex.org/W2355952544","https://openalex.org/W2403704861","https://openalex.org/W2464662284","https://openalex.org/W2521380866","https://openalex.org/W2562638954","https://openalex.org/W2622800264","https://openalex.org/W2795517288","https://openalex.org/W2804969359","https://openalex.org/W2808154769","https://openalex.org/W2909739147","https://openalex.org/W4301506186","https://openalex.org/W4388325967","https://openalex.org/W6719538504"],"related_works":["https://openalex.org/W3189724180","https://openalex.org/W2062700146","https://openalex.org/W4241031629","https://openalex.org/W4214932605","https://openalex.org/W2471846512","https://openalex.org/W2019166448","https://openalex.org/W2896840187","https://openalex.org/W1988043950","https://openalex.org/W2003373552","https://openalex.org/W2031358662"],"abstract_inverted_index":{"Through":[0],"the":[1],"presentation":[2],"of":[3],"its":[4],"user-friendly,":[5],"well-structured":[6],"new":[7],"web":[8],"site":[9],"conceived":[10],"in":[11,28],"close":[12],"proximity":[13],"to":[14],"experimentalists,":[15],"we":[16],"report":[17],"original":[18],"methods":[19],"that":[20],"show":[21],"how":[22],"PEPOP":[23],"2.0":[24],"can":[25],"assist":[26],"biologists":[27],"dealing":[29],"with":[30],"discontinuous":[31],"epitopes.":[32]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
