{"id":"https://openalex.org/W2953211530","doi":"https://doi.org/10.1186/s12859-019-2861-y","title":"miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules","display_name":"miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules","publication_year":2019,"publication_date":"2019-05-10","ids":{"openalex":"https://openalex.org/W2953211530","doi":"https://doi.org/10.1186/s12859-019-2861-y","mag":"2953211530","pmid":"https://pubmed.ncbi.nlm.nih.gov/31077152"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2861-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2861-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2861-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2861-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100702169","display_name":"Junpeng Zhang","orcid":"https://orcid.org/0000-0001-6127-9701"},"institutions":[{"id":"https://openalex.org/I6593398","display_name":"Dali University","ror":"https://ror.org/02y7rck89","country_code":"CN","type":"education","lineage":["https://openalex.org/I6593398"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Junpeng Zhang","raw_affiliation_strings":["School of Engineering, Dali University, Dali, 671003, Yunnan, China. zhangjunpeng_411@yahoo.com","School of Engineering, Dali University, Dali, China"],"raw_orcid":"https://orcid.org/0000-0001-6127-9701","affiliations":[{"raw_affiliation_string":"School of Engineering, Dali University, Dali, 671003, Yunnan, China. zhangjunpeng_411@yahoo.com","institution_ids":["https://openalex.org/I6593398"]},{"raw_affiliation_string":"School of Engineering, Dali University, Dali, China","institution_ids":["https://openalex.org/I6593398"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383342","display_name":"Lin Liu","orcid":"https://orcid.org/0000-0003-2843-5738"},"institutions":[{"id":"https://openalex.org/I170239107","display_name":"University of South Australia","ror":"https://ror.org/01p93h210","country_code":"AU","type":"education","lineage":["https://openalex.org/I170239107"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Lin Liu","raw_affiliation_strings":["School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095, Australia","School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095, Australia","institution_ids":["https://openalex.org/I170239107"]},{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, Australia","institution_ids":["https://openalex.org/I170239107"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071137947","display_name":"Taosheng Xu","orcid":"https://orcid.org/0000-0001-8283-7274"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2802624667","display_name":"Hefei Institutes of Physical Science","ror":"https://ror.org/046n57345","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802624667"]},{"id":"https://openalex.org/I4210099079","display_name":"Institute of Intelligent Machines","ror":"https://ror.org/00w0qep84","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802624667","https://openalex.org/I4210099079"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Taosheng Xu","raw_affiliation_strings":["Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, 230031, China","Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, 230031, China","institution_ids":["https://openalex.org/I2802624667","https://openalex.org/I4210099079","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, China","institution_ids":["https://openalex.org/I2802624667","https://openalex.org/I4210099079","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100781594","display_name":"Yong Xie","orcid":"https://orcid.org/0000-0001-5284-8757"},"institutions":[{"id":"https://openalex.org/I6593398","display_name":"Dali University","ror":"https://ror.org/02y7rck89","country_code":"CN","type":"education","lineage":["https://openalex.org/I6593398"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Xie","raw_affiliation_strings":["School of Engineering, Dali University, Dali, 671003, Yunnan, China","School of Engineering, Dali University, Dali, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Engineering, Dali University, Dali, 671003, Yunnan, China","institution_ids":["https://openalex.org/I6593398"]},{"raw_affiliation_string":"School of Engineering, Dali University, Dali, China","institution_ids":["https://openalex.org/I6593398"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066637002","display_name":"Chunwen Zhao","orcid":"https://orcid.org/0000-0002-4411-6828"},"institutions":[{"id":"https://openalex.org/I6593398","display_name":"Dali University","ror":"https://ror.org/02y7rck89","country_code":"CN","type":"education","lineage":["https://openalex.org/I6593398"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunwen Zhao","raw_affiliation_strings":["School of Engineering, Dali University, Dali, 671003, Yunnan, China","School of Engineering, Dali University, Dali, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Engineering, Dali University, Dali, 671003, Yunnan, China","institution_ids":["https://openalex.org/I6593398"]},{"raw_affiliation_string":"School of Engineering, Dali University, Dali, China","institution_ids":["https://openalex.org/I6593398"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012177739","display_name":"Jiuyong Li","orcid":"https://orcid.org/0000-0002-9023-1878"},"institutions":[{"id":"https://openalex.org/I170239107","display_name":"University of South Australia","ror":"https://ror.org/01p93h210","country_code":"AU","type":"education","lineage":["https://openalex.org/I170239107"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jiuyong Li","raw_affiliation_strings":["School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095, Australia","School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095, Australia","institution_ids":["https://openalex.org/I170239107"]},{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, Australia","institution_ids":["https://openalex.org/I170239107"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035846381","display_name":"Thuc Duy Le","orcid":"https://orcid.org/0000-0002-9732-4313"},"institutions":[{"id":"https://openalex.org/I170239107","display_name":"University of South Australia","ror":"https://ror.org/01p93h210","country_code":"AU","type":"education","lineage":["https://openalex.org/I170239107"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Thuc Duy Le","raw_affiliation_strings":["School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095, Australia. thuc.le@unisa.edu.au","School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095, Australia. thuc.le@unisa.edu.au","institution_ids":["https://openalex.org/I170239107"]},{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, Australia","institution_ids":["https://openalex.org/I170239107"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5035846381","https://openalex.org/A5100702169"],"corresponding_institution_ids":["https://openalex.org/I170239107","https://openalex.org/I6593398"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.3951,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.88934956,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"235","last_page":"235"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.8543000221252441,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.8543000221252441,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.030799999833106995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.010400000028312206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9209299683570862},{"id":"https://openalex.org/keywords/sponge","display_name":"Sponge","score":0.7412405014038086},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7092124819755554},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7079746723175049},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5776791572570801},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5196424722671509},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5122124552726746},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.46056586503982544},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4031149744987488},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11841806769371033},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08350729942321777},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06806042790412903},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06305703520774841}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9209299683570862},{"id":"https://openalex.org/C2778849931","wikidata":"https://www.wikidata.org/wiki/Q18960","display_name":"Sponge","level":2,"score":0.7412405014038086},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7092124819755554},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7079746723175049},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5776791572570801},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5196424722671509},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5122124552726746},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.46056586503982544},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4031149744987488},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11841806769371033},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08350729942321777},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06806042790412903},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06305703520774841},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-019-2861-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2861-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2861-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31077152","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31077152","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:689e611bbfe344a592acfd730ac722e5","is_oa":true,"landing_page_url":"https://doaj.org/article/689e611bbfe344a592acfd730ac722e5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-12 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5527914","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6509829","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:urm_publish:9916284784001831","is_oa":true,"landing_page_url":"https://hdl.handle.net/11541.2/137289","pdf_url":null,"source":{"id":"https://openalex.org/S4306402528","display_name":"UniSA Research Outputs Repository (University of South Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170239107","host_organization_name":"University of South Australia","host_organization_lineage":["https://openalex.org/I170239107"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2861-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2861-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2861-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4619005080","display_name":null,"funder_award_id":"2017FB099","funder_id":"https://openalex.org/F4320332533","funder_display_name":"Applied Basic Research Foundation of Yunnan Province"},{"id":"https://openalex.org/G6012743596","display_name":null,"funder_award_id":"61702069","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6024985873","display_name":null,"funder_award_id":"1123042","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G826466753","display_name":null,"funder_award_id":"1123042","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G8396315724","display_name":null,"funder_award_id":"DP140103617","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320332533","display_name":"Applied Basic Research Foundation of Yunnan Province","ror":"https://ror.org/030jhb479"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320335203","display_name":"Hefei Institutes of Physical Science, Chinese Academy of Sciences","ror":"https://ror.org/046n57345"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953211530.pdf","grobid_xml":"https://content.openalex.org/works/W2953211530.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1965032353","https://openalex.org/W1966498224","https://openalex.org/W1971623350","https://openalex.org/W1975304818","https://openalex.org/W1992097204","https://openalex.org/W2014946489","https://openalex.org/W2041509376","https://openalex.org/W2046387002","https://openalex.org/W2047940964","https://openalex.org/W2058835062","https://openalex.org/W2064165694","https://openalex.org/W2075843680","https://openalex.org/W2096578372","https://openalex.org/W2097627545","https://openalex.org/W2104508998","https://openalex.org/W2105549148","https://openalex.org/W2106030955","https://openalex.org/W2117977572","https://openalex.org/W2124166542","https://openalex.org/W2124756133","https://openalex.org/W2130687298","https://openalex.org/W2134629862","https://openalex.org/W2135398049","https://openalex.org/W2136850043","https://openalex.org/W2137734450","https://openalex.org/W2145931730","https://openalex.org/W2146512944","https://openalex.org/W2171398108","https://openalex.org/W2210577735","https://openalex.org/W2280882096","https://openalex.org/W2401645900","https://openalex.org/W2410060109","https://openalex.org/W2523970725","https://openalex.org/W2551383706","https://openalex.org/W2554957015","https://openalex.org/W2599820551","https://openalex.org/W2767546566","https://openalex.org/W2768632638","https://openalex.org/W2783055234","https://openalex.org/W2795782898","https://openalex.org/W2801440485","https://openalex.org/W2809365035","https://openalex.org/W2900841953","https://openalex.org/W2952615074","https://openalex.org/W6925372929"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2747931568","https://openalex.org/W2921090651","https://openalex.org/W2133055377","https://openalex.org/W2287365612"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1],"microRNA":[2],"(miRNA)":[3],"sponge":[4,48,99,116,125,132,144,168],"is":[5,42],"an":[6,86,110],"RNA":[7],"molecule":[8],"with":[9,60],"multiple":[10],"tandem":[11],"miRNA":[12,30,47,98,115,124,131,143,167],"response":[13],"elements":[14],"that":[15,51],"can":[16],"sequester":[17],"miRNAs":[18],"from":[19],"their":[20,35,57,154],"target":[21],"mRNAs.":[22],"Despite":[23],"growing":[24],"appreciation":[25],"of":[26,29,34,46,94,123,130,142],"the":[27,82,92,121,128],"importance":[28],"sponges,":[31],"our":[32],"knowledge":[33],"complex":[36],"functions":[37],"remains":[38],"limited.":[39],"Moreover,":[40,118],"there":[41],"still":[43],"a":[44],"lack":[45],"research":[49],"tools":[50],"help":[52],"researchers":[53,150],"to":[54,66,113,151,160],"quickly":[55,152],"compare":[56],"proposed":[58],"methods":[59,65,72,108,159],"other":[61],"methods,":[62,156],"apply":[63,157],"existing":[64,158],"new":[67,155,161],"datasets,":[68,162],"or":[69],"select":[70],"appropriate":[71],"for":[73,90],"assisting":[74],"in":[75],"subsequent":[76],"experimental":[77],"design.":[78],"RESULTS:":[79],"To":[80],"fill":[81],"gap,":[83],"we":[84],"present":[85],"R/Bioconductor":[87],"package,":[88],"miRspongeR,":[89],"simplifying":[91],"procedure":[93],"identifying":[95],"and":[96,102,109,127,139,163],"analyzing":[97],"interaction":[100],"networks":[101],"modules.":[103,145],"It":[104],"provides":[105],"seven":[106],"popular":[107],"integrative":[111],"method":[112],"identify":[114],"interactions.":[117],"it":[119],"supports":[120],"validation":[122],"interactions":[126],"identification":[129],"modules,":[133],"as":[134,136],"well":[135],"functional":[137],"enrichment":[138],"survival":[140],"analysis":[141],"CONCLUSIONS:":[146],"This":[147],"package":[148],"enables":[149],"evaluate":[153],"consequently":[164],"speed":[165],"up":[166],"research.":[169]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-23T08:51:43.019350","created_date":"2019-06-27T00:00:00"}
