{"id":"https://openalex.org/W2963987026","doi":"https://doi.org/10.1186/s12859-019-2857-7","title":"Pathogenic Protist Transmembranome database (PPTdb): a web-based platform for searching and analysis of protist transmembrane proteins","display_name":"Pathogenic Protist Transmembranome database (PPTdb): a web-based platform for searching and analysis of protist transmembrane proteins","publication_year":2019,"publication_date":"2019-07-01","ids":{"openalex":"https://openalex.org/W2963987026","doi":"https://doi.org/10.1186/s12859-019-2857-7","mag":"2963987026","pmid":"https://pubmed.ncbi.nlm.nih.gov/31337335"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2857-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2857-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2857-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2857-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102816014","display_name":"Chi\u2010Ching Lee","orcid":"https://orcid.org/0000-0003-2912-7745"},"institutions":[{"id":"https://openalex.org/I173093425","display_name":"Chang Gung University","ror":"https://ror.org/00d80zx46","country_code":"TW","type":"education","lineage":["https://openalex.org/I173093425"]},{"id":"https://openalex.org/I3020100970","display_name":"Chang Gung Memorial Hospital","ror":"https://ror.org/02verss31","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I3020100970"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chi-Ching Lee","raw_affiliation_strings":["Department and Graduate Institute of Computer Science and Information Engineering, Chang Gung University, Taoyuan, Taiwan","Genomic Medicine Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department and Graduate Institute of Computer Science and Information Engineering, Chang Gung University, Taoyuan, Taiwan","institution_ids":["https://openalex.org/I173093425"]},{"raw_affiliation_string":"Genomic Medicine Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan","institution_ids":["https://openalex.org/I3020100970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080244422","display_name":"Po-Jung Huang","orcid":"https://orcid.org/0000-0002-8728-8881"},"institutions":[{"id":"https://openalex.org/I173093425","display_name":"Chang Gung University","ror":"https://ror.org/00d80zx46","country_code":"TW","type":"education","lineage":["https://openalex.org/I173093425"]},{"id":"https://openalex.org/I3020100970","display_name":"Chang Gung Memorial Hospital","ror":"https://ror.org/02verss31","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I3020100970"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Po-Jung Huang","raw_affiliation_strings":["Department of Biomedical Sciences, Chang Gung University, Taoyuan, Taiwan","Genomic Medicine Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, Chang Gung University, Taoyuan, Taiwan","institution_ids":["https://openalex.org/I173093425"]},{"raw_affiliation_string":"Genomic Medicine Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan","institution_ids":["https://openalex.org/I3020100970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011599641","display_name":"Yuan\u2010Ming Yeh","orcid":"https://orcid.org/0000-0001-8720-947X"},"institutions":[{"id":"https://openalex.org/I3020100970","display_name":"Chang Gung Memorial Hospital","ror":"https://ror.org/02verss31","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I3020100970"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yuan-Ming Yeh","raw_affiliation_strings":["Genomic Medicine Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomic Medicine Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan","institution_ids":["https://openalex.org/I3020100970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059335107","display_name":"Sin-You Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I173093425","display_name":"Chang Gung University","ror":"https://ror.org/00d80zx46","country_code":"TW","type":"education","lineage":["https://openalex.org/I173093425"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Sin-You Chen","raw_affiliation_strings":["Department and Graduate Institute of Computer Science and Information Engineering, Chang Gung University, Taoyuan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department and Graduate Institute of Computer Science and Information Engineering, Chang Gung University, Taoyuan, Taiwan","institution_ids":["https://openalex.org/I173093425"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111516245","display_name":"Cheng-Hsun Chiu","orcid":null},"institutions":[{"id":"https://openalex.org/I3020100970","display_name":"Chang Gung Memorial Hospital","ror":"https://ror.org/02verss31","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I3020100970"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Cheng-Hsun Chiu","raw_affiliation_strings":["Genomic Medicine Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan","Molecular Infectious Disease Research Center, Chang Gung Memorial Hospital, Linkou, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomic Medicine Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan","institution_ids":["https://openalex.org/I3020100970"]},{"raw_affiliation_string":"Molecular Infectious Disease Research Center, Chang Gung Memorial Hospital, Linkou, Taiwan","institution_ids":["https://openalex.org/I3020100970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043220486","display_name":"Wei-Hung Cheng","orcid":"https://orcid.org/0000-0002-0100-7285"},"institutions":[{"id":"https://openalex.org/I141243467","display_name":"Chang Gung University of Science and Technology","ror":"https://ror.org/009knm296","country_code":"TW","type":"education","lineage":["https://openalex.org/I141243467"]},{"id":"https://openalex.org/I173093425","display_name":"Chang Gung University","ror":"https://ror.org/00d80zx46","country_code":"TW","type":"education","lineage":["https://openalex.org/I173093425"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Wei-Hung Cheng","raw_affiliation_strings":["Department of Parasitology, College of Medicine, Chang Gung University, Taoyuan, Taiwan. whcheng@mail.cgu.edu.tw","Department of Parasitology, College of Medicine, Chang Gung University, Taoyuan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Parasitology, College of Medicine, Chang Gung University, Taoyuan, Taiwan. whcheng@mail.cgu.edu.tw","institution_ids":["https://openalex.org/I173093425","https://openalex.org/I141243467"]},{"raw_affiliation_string":"Department of Parasitology, College of Medicine, Chang Gung University, Taoyuan, Taiwan","institution_ids":["https://openalex.org/I173093425"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040425523","display_name":"Petrus Tang","orcid":"https://orcid.org/0000-0003-0253-1836"},"institutions":[{"id":"https://openalex.org/I173093425","display_name":"Chang Gung University","ror":"https://ror.org/00d80zx46","country_code":"TW","type":"education","lineage":["https://openalex.org/I173093425"]},{"id":"https://openalex.org/I3020100970","display_name":"Chang Gung Memorial Hospital","ror":"https://ror.org/02verss31","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I3020100970"]},{"id":"https://openalex.org/I4210116208","display_name":"Linkou Chang Gung Memorial Hospital","ror":"https://ror.org/02dnn6q67","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I3020100970","https://openalex.org/I4210116208"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Petrus Tang","raw_affiliation_strings":["Department of Parasitology, College of Medicine, Chang Gung University, Taoyuan, Taiwan. petang@mail.cgu.edu.tw","Molecular Infectious Disease Research Center, Chang Gung Memorial Hospital, Linkou, Taiwan. petang@mail.cgu.edu.tw","Molecular Infectious Disease Research Center, Chang Gung Memorial Hospital, Linkou, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Parasitology, College of Medicine, Chang Gung University, Taoyuan, Taiwan. petang@mail.cgu.edu.tw","institution_ids":["https://openalex.org/I173093425"]},{"raw_affiliation_string":"Molecular Infectious Disease Research Center, Chang Gung Memorial Hospital, Linkou, Taiwan. petang@mail.cgu.edu.tw","institution_ids":["https://openalex.org/I3020100970","https://openalex.org/I4210116208"]},{"raw_affiliation_string":"Molecular Infectious Disease Research Center, Chang Gung Memorial Hospital, Linkou, Taiwan","institution_ids":["https://openalex.org/I3020100970"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5040425523","https://openalex.org/A5043220486"],"corresponding_institution_ids":["https://openalex.org/I141243467","https://openalex.org/I173093425","https://openalex.org/I3020100970","https://openalex.org/I4210116208"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0855,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.47394588,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"20","issue":"S13","first_page":"382","last_page":"382"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.8091999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.8091999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.06700000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.040800001472234726,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protist","display_name":"Protist","score":0.9187305569648743},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.48328784108161926},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4778273105621338},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4662992060184479},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3822941482067108},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3418399393558502},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32943427562713623},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2225552201271057},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13893118500709534}],"concepts":[{"id":"https://openalex.org/C2778330419","wikidata":"https://www.wikidata.org/wiki/Q10892","display_name":"Protist","level":3,"score":0.9187305569648743},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.48328784108161926},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4778273105621338},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4662992060184479},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3822941482067108},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3418399393558502},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32943427562713623},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2225552201271057},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13893118500709534},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-2857-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2857-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2857-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31337335","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31337335","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6651900","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6651900","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:cc6bd8e20a854654bdee0e33dde8cb46","is_oa":false,"landing_page_url":"https://doaj.org/article/cc6bd8e20a854654bdee0e33dde8cb46","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss S13, Pp 1-10 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2857-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2857-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2857-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1192399272","display_name":null,"funder_award_id":"MOST 106-","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G2344137502","display_name":null,"funder_award_id":"107-2320-B-182-021-MY3","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G4162621379","display_name":null,"funder_award_id":"MOST 107","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G4202958531","display_name":null,"funder_award_id":"MOST 107-","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G5563719332","display_name":null,"funder_award_id":"106-2221-E-","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G939887807","display_name":null,"funder_award_id":"MOST 106","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322767","display_name":"Chang Gung Medical Foundation","ror":"https://ror.org/02verss31"},{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2963987026.pdf","grobid_xml":"https://content.openalex.org/works/W2963987026.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1513337501","https://openalex.org/W1971416849","https://openalex.org/W1985451258","https://openalex.org/W1988004276","https://openalex.org/W1988525091","https://openalex.org/W1992237103","https://openalex.org/W1992946910","https://openalex.org/W2015198164","https://openalex.org/W2015214828","https://openalex.org/W2029335938","https://openalex.org/W2084625228","https://openalex.org/W2096525273","https://openalex.org/W2106882534","https://openalex.org/W2114347076","https://openalex.org/W2132923209","https://openalex.org/W2149080875","https://openalex.org/W2414944188","https://openalex.org/W2557833792","https://openalex.org/W2558837609","https://openalex.org/W2739999456","https://openalex.org/W2751583588","https://openalex.org/W2800669284","https://openalex.org/W4212865600","https://openalex.org/W4250297812"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2911140022","https://openalex.org/W3001199599","https://openalex.org/W2998917756","https://openalex.org/W3103429035","https://openalex.org/W3001860478","https://openalex.org/W2004690942","https://openalex.org/W3001864469","https://openalex.org/W2953525636","https://openalex.org/W3025048427"],"abstract_inverted_index":{"BACKGROUND:":[0],"Pathogenic":[1],"protist":[2,35,176],"membrane":[3,36,96],"transporter":[4,37,97,123,169,177],"proteins":[5,71,178],"play":[6],"important":[7],"roles":[8],"not":[9],"only":[10],"in":[11,21],"exchanging":[12],"molecules":[13],"into":[14],"and":[15,24,44,82,103,117,137,163,179,206,220],"out":[16],"of":[17,46,157,167,200,215,218],"cells":[18],"but":[19],"also":[20,141],"acquiring":[22],"nutrients":[23],"biosynthetic":[25],"compounds":[26],"from":[27,60],"their":[28,104,221],"hosts.":[29,106,222],"Currently,":[30],"there":[31],"is":[32,109,225],"no":[33],"centralized":[34],"database":[38,112],"published,":[39],"which":[40],"makes":[41],"system-wide":[42],"comparisons":[43],"studies":[45,217],"host-pathogen":[47,168],"membranomes":[48],"difficult":[49],"to":[50,147],"achieve.":[51],"RESULTS:":[52],"We":[53,85],"analyzed":[54],"over":[55],"one":[56],"million":[57],"protein":[58,98,127,208],"sequences":[59],"139":[61],"protists":[62,102,219],"with":[63,113],"full":[64],"or":[65],"partial":[66],"genome":[67],"sequences.":[68],"Putative":[69],"transmembrane":[70,153],"were":[72],"annotated":[73],"by":[74],"primary":[75],"sequence":[76,135],"alignments,":[77],"conserved":[78,131],"secondary":[79],"structural":[80],"elements,":[81],"functional":[83,129,132,165,189,198],"domains.":[84],"have":[86],"constructed":[87],"the":[88,204,213],"PPTdb":[89,108,140,173,224],"(Pathogenic":[90],"Protist":[91],"Transmembranome":[92],"database),":[93],"a":[94,110,114,181,187],"comprehensive":[95,216],"portal":[99],"for":[100,196],"pathogenic":[101],"human":[105],"The":[107,139,172,223],"web-based":[111],"user-friendly":[115,182],"searching":[116],"data":[118,183],"querying":[119],"interface,":[120],"including":[121,152],"hierarchical":[122],"classification":[124],"(TC)":[125],"numbers,":[126],"sequences,":[128],"annotations,":[130],"domains,":[133],"batch":[134],"retrieving":[136,184],"downloads.":[138],"serves":[142],"as":[143],"an":[144],"analytical":[145],"platform":[146],"provide":[148,193],"useful":[149,194],"comparison/mining":[150],"tools,":[151],"ability":[154,191],"evaluation,":[155],"annotation":[156],"unknown":[158],"proteins,":[159],"informative":[160],"visualization":[161],"charts,":[162],"iterative":[164],"mining":[166],"proteins.":[170],"CONCLUSIONS:":[171],"collected":[174],"putative":[175],"offers":[180],"interface.":[185],"Moreover,":[186],"pairwise":[188],"comparison":[190],"can":[192,211],"information":[195],"identifying":[197],"uniqueness":[199],"each":[201],"protist.":[202],"Finally,":[203],"host":[205],"non-host":[207],"similarity":[209],"search":[210],"fulfill":[212],"needs":[214],"freely":[226],"accessible":[227],"at":[228],"http://pptdb.cgu.edu.tw":[229],".":[230]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
