{"id":"https://openalex.org/W2945891661","doi":"https://doi.org/10.1186/s12859-019-2847-9","title":"A random walk-based method to identify driver genes by integrating the subcellular localization and variation frequency into bipartite graph","display_name":"A random walk-based method to identify driver genes by integrating the subcellular localization and variation frequency into bipartite graph","publication_year":2019,"publication_date":"2019-05-14","ids":{"openalex":"https://openalex.org/W2945891661","doi":"https://doi.org/10.1186/s12859-019-2847-9","mag":"2945891661","pmid":"https://pubmed.ncbi.nlm.nih.gov/31088372"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2847-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2847-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2847-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2847-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029138955","display_name":"Junrong Song","orcid":"https://orcid.org/0009-0000-6716-5975"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Junrong Song","raw_affiliation_strings":["Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People's Republic of China","Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People's Republic of China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People\u2019s Republic of China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053073532","display_name":"Wei Peng","orcid":"https://orcid.org/0000-0002-9572-951X"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Peng","raw_affiliation_strings":["Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People's Republic of China. weipeng1980@gmail.com","Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People's Republic of China. weipeng1980@gmail.com","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People\u2019s Republic of China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100431215","display_name":"Feng Wang","orcid":"https://orcid.org/0000-0002-2441-7543"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Wang","raw_affiliation_strings":["Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People's Republic of China","Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People's Republic of China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Management and Economics/Computer center/Faculty of Information Engineering and Automation/Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Lianhua Road, 650050, Kunming, People\u2019s Republic of China","institution_ids":["https://openalex.org/I10660446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029138955"],"corresponding_institution_ids":["https://openalex.org/I10660446"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.092,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.92523161,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"238","last_page":"238"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5673388242721558},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5236201882362366},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42560875415802},{"id":"https://openalex.org/keywords/bipartite-graph","display_name":"Bipartite graph","score":0.41207632422447205},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.3563941717147827},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2884126901626587},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22017359733581543},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.11228644847869873}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5673388242721558},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5236201882362366},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42560875415802},{"id":"https://openalex.org/C197657726","wikidata":"https://www.wikidata.org/wiki/Q174733","display_name":"Bipartite graph","level":3,"score":0.41207632422447205},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.3563941717147827},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2884126901626587},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22017359733581543},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.11228644847869873}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-2847-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2847-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2847-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31088372","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31088372","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:061dbc94ca404ff2b379e517a7134f0d","is_oa":true,"landing_page_url":"https://doaj.org/article/061dbc94ca404ff2b379e517a7134f0d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-17 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6518800","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6518800","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2847-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2847-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2847-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5}],"awards":[{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2606816986","display_name":null,"funder_award_id":"61502214","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2786050773","display_name":null,"funder_award_id":"31560317, 61502214,61472133,61502166,61702122 and 81560221.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994494637","display_name":null,"funder_award_id":"and 81","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G866183384","display_name":null,"funder_award_id":"31560317","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G905432865","display_name":null,"funder_award_id":"81560221","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G906271884","display_name":null,"funder_award_id":"61502166","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G991606066","display_name":null,"funder_award_id":"61472133","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2945891661.pdf","grobid_xml":"https://content.openalex.org/works/W2945891661.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W47135330","https://openalex.org/W1422266211","https://openalex.org/W1880949099","https://openalex.org/W1891364196","https://openalex.org/W1966331733","https://openalex.org/W2009720434","https://openalex.org/W2011912935","https://openalex.org/W2025183726","https://openalex.org/W2044433401","https://openalex.org/W2052603559","https://openalex.org/W2058539819","https://openalex.org/W2059069581","https://openalex.org/W2060397137","https://openalex.org/W2070831760","https://openalex.org/W2078969352","https://openalex.org/W2079250833","https://openalex.org/W2080878119","https://openalex.org/W2088544963","https://openalex.org/W2092180333","https://openalex.org/W2095319945","https://openalex.org/W2095324296","https://openalex.org/W2111803340","https://openalex.org/W2113354827","https://openalex.org/W2114031931","https://openalex.org/W2115746733","https://openalex.org/W2118496942","https://openalex.org/W2121906867","https://openalex.org/W2139227366","https://openalex.org/W2149082178","https://openalex.org/W2152176732","https://openalex.org/W2157123927","https://openalex.org/W2158217645","https://openalex.org/W2158529347","https://openalex.org/W2186623407","https://openalex.org/W2201354711","https://openalex.org/W2206052936","https://openalex.org/W2442835468","https://openalex.org/W2471330250","https://openalex.org/W2517354921","https://openalex.org/W2562827486","https://openalex.org/W2619682058","https://openalex.org/W2743167137","https://openalex.org/W2744130885","https://openalex.org/W2964156730","https://openalex.org/W4230962320"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2371352078","https://openalex.org/W2953461625","https://openalex.org/W2077383796","https://openalex.org/W2080136900","https://openalex.org/W2372768926","https://openalex.org/W2999799752","https://openalex.org/W2567825307","https://openalex.org/W2054458431","https://openalex.org/W2115167491"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"can":[3],"be":[4],"obtained":[5],"at":[6],"https://github.com/weiba/Subdyquency":[7],".":[8]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
