{"id":"https://openalex.org/W2947836908","doi":"https://doi.org/10.1186/s12859-019-2808-3","title":"An application of convolutional neural networks with salient features for relation classification","display_name":"An application of convolutional neural networks with salient features for relation classification","publication_year":2019,"publication_date":"2019-05-01","ids":{"openalex":"https://openalex.org/W2947836908","doi":"https://doi.org/10.1186/s12859-019-2808-3","mag":"2947836908","pmid":"https://pubmed.ncbi.nlm.nih.gov/31138159"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2808-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2808-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2808-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2808-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011031653","display_name":"Zolzaya Dashdorj","orcid":"https://orcid.org/0000-0001-6367-9039"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Zolzaya Dashdorj","raw_affiliation_strings":["Department of Library and Information Science, Yonsei University, 50, Yonsei-ro, Seodaemun-gu, Seoul, 120-749, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Library and Information Science, Yonsei University, 50, Yonsei-ro, Seodaemun-gu, Seoul, 120-749, Republic of Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045749444","display_name":"Min Song","orcid":"https://orcid.org/0000-0003-3255-1600"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Min Song","raw_affiliation_strings":["Department of Library and Information Science, Yonsei University, 50, Yonsei-ro, Seodaemun-gu, Seoul, 120-749, Republic of Korea. min.song@yonsei.ac.kr","Department of Library and Information Science, Yonsei University, 50, Yonsei-ro, Seodaemun-gu, Seoul, 120-749, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Library and Information Science, Yonsei University, 50, Yonsei-ro, Seodaemun-gu, Seoul, 120-749, Republic of Korea. min.song@yonsei.ac.kr","institution_ids":[]},{"raw_affiliation_string":"Department of Library and Information Science, Yonsei University, 50, Yonsei-ro, Seodaemun-gu, Seoul, 120-749, Republic of Korea","institution_ids":["https://openalex.org/I193775966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5011031653"],"corresponding_institution_ids":["https://openalex.org/I193775966"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6012,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.66779245,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"20","issue":"S10","first_page":"244","last_page":"244"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7535768151283264},{"id":"https://openalex.org/keywords/salient","display_name":"Salient","score":0.6692624688148499},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5859713554382324},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5606679916381836},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5082971453666687},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.46125471591949463},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4556749761104584},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3844306468963623},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3818996548652649},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3271949291229248},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21306884288787842},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1274833381175995},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08656293153762817},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06271836161613464}],"concepts":[{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7535768151283264},{"id":"https://openalex.org/C2780719617","wikidata":"https://www.wikidata.org/wiki/Q1030752","display_name":"Salient","level":2,"score":0.6692624688148499},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5859713554382324},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5606679916381836},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5082971453666687},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.46125471591949463},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4556749761104584},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3844306468963623},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3818996548652649},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3271949291229248},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21306884288787842},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1274833381175995},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08656293153762817},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06271836161613464}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-2808-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2808-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2808-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31138159","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31138159","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:17bdf64ff7ba46ec8642b8ff6fcfd4f4","is_oa":true,"landing_page_url":"https://doaj.org/article/17bdf64ff7ba46ec8642b8ff6fcfd4f4","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss S10, Pp 1-12 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5523882","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6538539","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2808-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2808-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2808-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.75,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2024907198","display_name":null,"funder_award_id":"2013M3A9C4078138","funder_id":"https://openalex.org/F4320322030","funder_display_name":"Ministry of Science, ICT and Future Planning"},{"id":"https://openalex.org/G6596663208","display_name":null,"funder_award_id":"NRF-2013M3A9C4078138","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G8001101250","display_name":null,"funder_award_id":"NRF-2013M3A9C4078138","funder_id":"https://openalex.org/F4320322030","funder_display_name":"Ministry of Science, ICT and Future Planning"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320321314","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96"},{"id":"https://openalex.org/F4320322030","display_name":"Ministry of Science, ICT and Future Planning","ror":"https://ror.org/032e49973"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2947836908.pdf","grobid_xml":"https://content.openalex.org/works/W2947836908.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1473718842","https://openalex.org/W1832693441","https://openalex.org/W1904365287","https://openalex.org/W1986398135","https://openalex.org/W2030408698","https://openalex.org/W2053238041","https://openalex.org/W2095705004","https://openalex.org/W2097998348","https://openalex.org/W2098201295","https://openalex.org/W2099779943","https://openalex.org/W2120615054","https://openalex.org/W2120814856","https://openalex.org/W2131241448","https://openalex.org/W2135192531","https://openalex.org/W2138627627","https://openalex.org/W2149557440","https://openalex.org/W2152269015","https://openalex.org/W2158899491","https://openalex.org/W2162931300","https://openalex.org/W2250521169","https://openalex.org/W2405671176","https://openalex.org/W2527896214","https://openalex.org/W2554902151","https://openalex.org/W2790820343","https://openalex.org/W2804865622","https://openalex.org/W2963083845","https://openalex.org/W2963171262","https://openalex.org/W2963921497","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2329500892","https://openalex.org/W28991112","https://openalex.org/W2370726991","https://openalex.org/W4234874385","https://openalex.org/W2369710579","https://openalex.org/W2545348020","https://openalex.org/W2323648130","https://openalex.org/W4327728159","https://openalex.org/W2912751582","https://openalex.org/W2157140558"],"abstract_inverted_index":{"Our":[0],"results":[1],"suggest":[2],"that":[3],"our":[4,52],"proposed":[5,53],"CNN":[6],"based":[7],"model":[8,54],"using":[9],"the":[10,16,20,35,40,60,63],"not":[11],"only":[12],"single":[13],"feature":[14],"as":[15],"raw":[17],"text":[18],"of":[19,22,59],"sentences":[21,37],"biomedical":[23,36],"literature,":[24],"but":[25],"also":[26],"coupling":[27],"with":[28,62],"multiple":[29],"and":[30,48],"highlighted":[31],"features":[32],"extracted":[33],"from":[34],"could":[38],"improve":[39],"classification":[41],"performance":[42],"significantly.":[43],"We":[44],"offer":[45],"hyperparameter":[46],"tuning":[47],"optimization":[49],"approaches":[50],"for":[51],"to":[55],"obtain":[56],"optimal":[57],"hyperparameters":[58],"models":[61],"best":[64],"performance.":[65]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
