{"id":"https://openalex.org/W2941800789","doi":"https://doi.org/10.1186/s12859-019-2806-5","title":"CSESA: an R package to predict Salmonella enterica serotype based on newly incorporated spacer pairs of CRISPR","display_name":"CSESA: an R package to predict Salmonella enterica serotype based on newly incorporated spacer pairs of CRISPR","publication_year":2019,"publication_date":"2019-04-27","ids":{"openalex":"https://openalex.org/W2941800789","doi":"https://doi.org/10.1186/s12859-019-2806-5","mag":"2941800789","pmid":"https://pubmed.ncbi.nlm.nih.gov/31029079"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2806-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2806-5","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-019-2806-5.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-019-2806-5.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054097926","display_name":"Lang Yang","orcid":"https://orcid.org/0000-0002-5234-7394"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]},{"id":"https://openalex.org/I4210161151","display_name":"Beijing Center for Disease Prevention and Control","ror":"https://ror.org/058dc0w16","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210161151"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lang Yang","raw_affiliation_strings":["Academy of Military Medical Sciences, Beijing, China","Center for Disease Control and Prevention of PLA, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Center for Disease Control and Prevention of PLA, Beijing, China","institution_ids":["https://openalex.org/I4210161151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100461932","display_name":"Xia Zhang","orcid":"https://orcid.org/0009-0005-1159-9631"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xia Zhang","raw_affiliation_strings":["School of electronics engineering and computer science, Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of electronics engineering and computer science, Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100400503","display_name":"Yuqi Liu","orcid":"https://orcid.org/0000-0001-7900-9208"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]},{"id":"https://openalex.org/I4210161151","display_name":"Beijing Center for Disease Prevention and Control","ror":"https://ror.org/058dc0w16","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210161151"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuqi Liu","raw_affiliation_strings":["Academy of Military Medical Sciences, Beijing, China","Center for Disease Control and Prevention of PLA, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Center for Disease Control and Prevention of PLA, Beijing, China","institution_ids":["https://openalex.org/I4210161151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100348710","display_name":"Hao Li","orcid":"https://orcid.org/0000-0003-4768-3833"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Li","raw_affiliation_strings":["Academy of Military Medical Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102013468","display_name":"Shaofu Qiu","orcid":"https://orcid.org/0000-0001-5070-9294"},"institutions":[{"id":"https://openalex.org/I4210161151","display_name":"Beijing Center for Disease Prevention and Control","ror":"https://ror.org/058dc0w16","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210161151"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaofu Qiu","raw_affiliation_strings":["Center for Disease Control and Prevention of PLA, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Disease Control and Prevention of PLA, Beijing, China","institution_ids":["https://openalex.org/I4210161151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100432689","display_name":"Peng Li","orcid":"https://orcid.org/0000-0002-3145-887X"},"institutions":[{"id":"https://openalex.org/I184490438","display_name":"Chinese Center For Disease Control and Prevention","ror":"https://ror.org/04wktzw65","country_code":"CN","type":"government","lineage":["https://openalex.org/I184490438","https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210161151","display_name":"Beijing Center for Disease Prevention and Control","ror":"https://ror.org/058dc0w16","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210161151"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Peng Li","raw_affiliation_strings":["Center for Disease Control and Prevention of PLA, Beijing, China. jiekenlee@126.com","Center for Disease Control and Prevention of PLA, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-3145-887X","affiliations":[{"raw_affiliation_string":"Center for Disease Control and Prevention of PLA, Beijing, China. jiekenlee@126.com","institution_ids":["https://openalex.org/I184490438","https://openalex.org/I4210161151"]},{"raw_affiliation_string":"Center for Disease Control and Prevention of PLA, Beijing, China","institution_ids":["https://openalex.org/I4210161151"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046552608","display_name":"Hongbin Song","orcid":"https://orcid.org/0000-0002-2781-3031"},"institutions":[{"id":"https://openalex.org/I4210161151","display_name":"Beijing Center for Disease Prevention and Control","ror":"https://ror.org/058dc0w16","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210161151"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hongbin Song","raw_affiliation_strings":["Center for Disease Control and Prevention of PLA, Beijing, China. hongbinsong@263.net","Center for Disease Control and Prevention of PLA, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Disease Control and Prevention of PLA, Beijing, China. hongbinsong@263.net","institution_ids":["https://openalex.org/I4210161151"]},{"raw_affiliation_string":"Center for Disease Control and Prevention of PLA, Beijing, China","institution_ids":["https://openalex.org/I4210161151"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046552608","https://openalex.org/A5100432689"],"corresponding_institution_ids":["https://openalex.org/I184490438","https://openalex.org/I4210161151"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.1517,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.46662668,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"20","issue":"1","first_page":"215","last_page":"215"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.42250001430511475,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.42250001430511475,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":0.33970001339912415,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11684","display_name":"Vibrio bacteria research studies","score":0.12700000405311584,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/salmonella-enterica","display_name":"Salmonella enterica","score":0.8410714268684387},{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.7313097715377808},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6933709383010864},{"id":"https://openalex.org/keywords/serotype","display_name":"Serotype","score":0.6643044948577881},{"id":"https://openalex.org/keywords/salmonella","display_name":"Salmonella","score":0.6239210367202759},{"id":"https://openalex.org/keywords/system-in-package","display_name":"System in package","score":0.5441057682037354},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5249188542366028},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5074934363365173},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44768428802490234},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3766399025917053},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3664688467979431},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.36194753646850586},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3380950689315796},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14443674683570862},{"id":"https://openalex.org/keywords/chip","display_name":"Chip","score":0.13448789715766907},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10715159773826599},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.10621088743209839}],"concepts":[{"id":"https://openalex.org/C2779607309","wikidata":"https://www.wikidata.org/wiki/Q2264864","display_name":"Salmonella enterica","level":4,"score":0.8410714268684387},{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.7313097715377808},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6933709383010864},{"id":"https://openalex.org/C10389963","wikidata":"https://www.wikidata.org/wiki/Q848328","display_name":"Serotype","level":2,"score":0.6643044948577881},{"id":"https://openalex.org/C2781065037","wikidata":"https://www.wikidata.org/wiki/Q150839","display_name":"Salmonella","level":3,"score":0.6239210367202759},{"id":"https://openalex.org/C146667757","wikidata":"https://www.wikidata.org/wiki/Q1457198","display_name":"System in package","level":3,"score":0.5441057682037354},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5249188542366028},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5074934363365173},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44768428802490234},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3766399025917053},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3664688467979431},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.36194753646850586},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3380950689315796},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14443674683570862},{"id":"https://openalex.org/C165005293","wikidata":"https://www.wikidata.org/wiki/Q1074500","display_name":"Chip","level":2,"score":0.13448789715766907},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10715159773826599},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.10621088743209839},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012703","descriptor_name":"Serotyping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012703","descriptor_name":"Serotyping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012703","descriptor_name":"Serotyping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012703","descriptor_name":"Serotyping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019779","descriptor_name":"Salmonella enterica","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019779","descriptor_name":"Salmonella enterica","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019779","descriptor_name":"Salmonella enterica","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019779","descriptor_name":"Salmonella enterica","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D065288","descriptor_name":"Serogroup","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065288","descriptor_name":"Serogroup","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065288","descriptor_name":"Serogroup","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065288","descriptor_name":"Serogroup","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-2806-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2806-5","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-019-2806-5.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31029079","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31029079","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:aa6d7a67df164ba581d6773cb569475a","is_oa":true,"landing_page_url":"https://doaj.org/article/aa6d7a67df164ba581d6773cb569475a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-6 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6486994","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6486994","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2806-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2806-5","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-019-2806-5.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1308231772","display_name":null,"funder_award_id":"5172029","funder_id":"https://openalex.org/F3057939197","funder_display_name":"Comanche Nation"},{"id":"https://openalex.org/G2890792711","display_name":null,"funder_award_id":"5172029","funder_id":"https://openalex.org/F4320322919","funder_display_name":"Natural Science Foundation of Beijing Municipality"}],"funders":[{"id":"https://openalex.org/F3057939197","display_name":"Comanche Nation","ror":null},{"id":"https://openalex.org/F4320322919","display_name":"Natural Science Foundation of Beijing Municipality","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2941800789.pdf","grobid_xml":"https://content.openalex.org/works/W2941800789.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1575191168","https://openalex.org/W2037252631","https://openalex.org/W2038206648","https://openalex.org/W2060573994","https://openalex.org/W2062280978","https://openalex.org/W2069678357","https://openalex.org/W2077653913","https://openalex.org/W2101997581","https://openalex.org/W2119730621","https://openalex.org/W2127234620","https://openalex.org/W2142678478","https://openalex.org/W2150083824","https://openalex.org/W2154904875"],"related_works":["https://openalex.org/W4293199045","https://openalex.org/W2405656580","https://openalex.org/W2642604616","https://openalex.org/W3162049976","https://openalex.org/W4381712632","https://openalex.org/W3163009052","https://openalex.org/W3029656231","https://openalex.org/W3116547599","https://openalex.org/W2409842116","https://openalex.org/W4365936098"],"abstract_inverted_index":{"BACKGROUND:":[0],"Salmonella":[1,41],"enterica":[2,24,42,73,118,133],"is":[3,14,27,107,142],"a":[4,108],"major":[5],"cause":[6],"of":[7,54,102,116,122,129,138],"bacterial":[8],"food-borne":[9],"disease":[10],"worldwide.":[11],"Immunological":[12],"serotyping":[13,130],"the":[15,47,51,61,81,90,114,127,136],"most":[16],"commonly":[17],"used":[18],"typing":[19,63],"method":[20,64],"to":[21,45],"characterize":[22],"S.":[23,55,72,103,117,132],"isolates,":[25],"but":[26],"time-consuming":[28],"and":[29,66,86,110,134],"requires":[30],"expensive":[31],"reagents.":[32],"Here,":[33],"we":[34],"developed":[35],"an":[36],"R":[37],"package":[38,76,124],"CSESA":[39,58,93,106,123,141],"(CRISPR-based":[40],"Serotype":[43],"Analyzer)":[44],"predict":[46],"serotype":[48],"based":[49],"on":[50,70],"CRISPR":[52,62,78],"loci":[53],"enterica.":[56,104],"RESULTS:":[57],"has":[59,94],"implemented":[60],"CLSPT":[65],"extended":[67],"its":[68],"coverage":[69],"diverse":[71],"serotypes.":[74,92,119],"This":[75],"takes":[77],"sequences":[79,83,101],"or":[80],"genome":[82],"as":[84],"input":[85],"provides":[87],"users":[88],"with":[89,98],"predicted":[91],"shown":[95],"excellent":[96],"performance":[97],"currently":[99],"available":[100,144],"CONCLUSIONS:":[105],"convenient":[109],"useful":[111],"tool":[112],"for":[113,131],"prediction":[115],"The":[120],"application":[121],"can":[125],"improve":[126],"efficiency":[128],"reduce":[135],"burden":[137],"manpower":[139],"resources.":[140],"freely":[143],"from":[145],"CRAN":[146],"at":[147],"https://cran.r-project.org/web/packages/CSESA/":[148],".":[149]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
