{"id":"https://openalex.org/W2767308104","doi":"https://doi.org/10.1186/s12859-019-2784-7","title":"Fixed-parameter tractable sampling for RNA design with multiple target structures","display_name":"Fixed-parameter tractable sampling for RNA design with multiple target structures","publication_year":2019,"publication_date":"2019-04-25","ids":{"openalex":"https://openalex.org/W2767308104","doi":"https://doi.org/10.1186/s12859-019-2784-7","mag":"2767308104","pmid":"https://pubmed.ncbi.nlm.nih.gov/31023239"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2784-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2784-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2784-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2784-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085948882","display_name":"Stefan Hammer","orcid":"https://orcid.org/0000-0002-0716-8063"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Stefan Hammer","raw_affiliation_strings":["Bioinformatics and Computational Biology Research Group, Univ. Vienna, W\u00e4hringerstr. 17, Wien, A-1090, Austria","Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, D-04107, Germany","Dept. Theoretical Chemistry, Univ. Vienna, W\u00e4hringerstr. 17, Wien, A-1090, Austria","University of Vienna, Vienna#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biology Research Group, Univ. Vienna, W\u00e4hringerstr. 17, Wien, A-1090, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, D-04107, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Dept. Theoretical Chemistry, Univ. Vienna, W\u00e4hringerstr. 17, Wien, A-1090, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"University of Vienna, Vienna#TAB#","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100392271","display_name":"Wei Wang","orcid":"https://orcid.org/0000-0003-3651-3556"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210139461","display_name":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique","ror":"https://ror.org/04afed728","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210139461","https://openalex.org/I4210145102","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Wei Wang","raw_affiliation_strings":["CNRS UMR 7161 LIX, Ecole Polytechnique, Bat. Alan Turing, Palaiseau, 91120, France","Laboratoire d'informatique de l'\u00c9cole polytechnique [Palaiseau]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS UMR 7161 LIX, Ecole Polytechnique, Bat. Alan Turing, Palaiseau, 91120, France","institution_ids":["https://openalex.org/I4210139461","https://openalex.org/I142476485","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'informatique de l'\u00c9cole polytechnique [Palaiseau]","institution_ids":["https://openalex.org/I4210139461"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sebastian Will","orcid":"https://orcid.org/0000-0002-2376-9205"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["AT","FR"],"is_corresponding":false,"raw_author_name":"Sebastian Will","raw_affiliation_strings":["Bioinformatics and Computational Biology Research Group, Univ. Vienna, W\u00e4hringerstr. 17, Wien, A-1090, Austria. will@tbi.univie.ac.at","Dept. Theoretical Chemistry, Univ. Vienna, W\u00e4hringerstr. 17, Wien, A-1090, Austria. will@tbi.univie.ac.at","Laboratoire de Recherche en Informatique#TAB#"],"raw_orcid":"https://orcid.org/0000-0002-2376-9205","affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biology Research Group, Univ. Vienna, W\u00e4hringerstr. 17, Wien, A-1090, Austria. will@tbi.univie.ac.at","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Dept. Theoretical Chemistry, Univ. Vienna, W\u00e4hringerstr. 17, Wien, A-1090, Austria. will@tbi.univie.ac.at","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Laboratoire de Recherche en Informatique#TAB#","institution_ids":["https://openalex.org/I4210144804"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076325273","display_name":"Yann Ponty","orcid":"https://orcid.org/0000-0002-7615-3930"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210139461","display_name":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique","ror":"https://ror.org/04afed728","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210139461","https://openalex.org/I4210145102","https://openalex.org/I4210159245"]}],"countries":["AT","FR"],"is_corresponding":false,"raw_author_name":"Yann Ponty","raw_affiliation_strings":["CNRS UMR 7161 LIX, Ecole Polytechnique, Bat. Alan Turing, Palaiseau, 91120, France. yann.ponty@lix.polytechnique.fr","University of Vienna, Vienna#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS UMR 7161 LIX, Ecole Polytechnique, Bat. Alan Turing, Palaiseau, 91120, France. yann.ponty@lix.polytechnique.fr","institution_ids":["https://openalex.org/I4210139461","https://openalex.org/I142476485","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"University of Vienna, Vienna#TAB#","institution_ids":["https://openalex.org/I129774422"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0019992,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":"1","first_page":"209","last_page":"209"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.010599999688565731,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6278395652770996},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.5294156670570374},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.32381346821784973},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.10563740134239197}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6278395652770996},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.5294156670570374},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.32381346821784973},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.10563740134239197},{"id":"https://openalex.org/C94915269","wikidata":"https://www.wikidata.org/wiki/Q1834857","display_name":"Detector","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":11,"locations":[{"id":"doi:10.1186/s12859-019-2784-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2784-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2784-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31023239","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31023239","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:1804.00841","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1804.00841","pdf_url":"https://arxiv.org/pdf/1804.00841","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:info:fedora/oai:univie.ac.at:o:1076930","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:1076930","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1471-2105","raw_type":"article"},{"id":"pmh:oai:HAL:hal-01631277v2","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-01631277","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://recomb2018.fr","raw_type":"Conference papers"},{"id":"pmh:oai:HAL:hal-02112888v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-02112888","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2019, 20 (1), pp.209. &#x27E8;10.1186/s12859-019-2784-7&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:0054432392424bafa16cb5cd223ea456","is_oa":true,"landing_page_url":"https://doaj.org/article/0054432392424bafa16cb5cd223ea456","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-13 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5477349","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6482512","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"doi:10.48550/arxiv.1804.00841","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1804.00841","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.6084/m9.figshare.c.4484720","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.4484720","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"doi:10.6084/m9.figshare.c.4484720.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.4484720.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2784-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2784-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2784-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G7092705448","display_name":null,"funder_award_id":"ANR-14-CE34-0011","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2767308104.pdf","grobid_xml":"https://content.openalex.org/works/W2767308104.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W82106056","https://openalex.org/W123906727","https://openalex.org/W1543796220","https://openalex.org/W1770469170","https://openalex.org/W1934768785","https://openalex.org/W1966994937","https://openalex.org/W1969390039","https://openalex.org/W1970055835","https://openalex.org/W1977815530","https://openalex.org/W1984675364","https://openalex.org/W2004724832","https://openalex.org/W2018547553","https://openalex.org/W2022208537","https://openalex.org/W2053350156","https://openalex.org/W2075305839","https://openalex.org/W2080430334","https://openalex.org/W2086561953","https://openalex.org/W2095258877","https://openalex.org/W2102573817","https://openalex.org/W2104141342","https://openalex.org/W2105052346","https://openalex.org/W2113221971","https://openalex.org/W2115275409","https://openalex.org/W2117365957","https://openalex.org/W2117869369","https://openalex.org/W2122924340","https://openalex.org/W2122944508","https://openalex.org/W2126244322","https://openalex.org/W2140505514","https://openalex.org/W2148599336","https://openalex.org/W2153140501","https://openalex.org/W2159117141","https://openalex.org/W2176307068","https://openalex.org/W2306133784","https://openalex.org/W2554065905","https://openalex.org/W2567361281","https://openalex.org/W2607526881","https://openalex.org/W2752935479","https://openalex.org/W2795286085","https://openalex.org/W2951476094","https://openalex.org/W2951513673","https://openalex.org/W2963427899","https://openalex.org/W3111890340"],"related_works":["https://openalex.org/W303980170","https://openalex.org/W2351491280","https://openalex.org/W2386767533","https://openalex.org/W2371447506","https://openalex.org/W2333698505","https://openalex.org/W2785230770","https://openalex.org/W2390726124","https://openalex.org/W2375537470","https://openalex.org/W2364664711","https://openalex.org/W1974091475"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"design":[2,16,46,73,110,144],"of":[3,43,50,74,83,96,119,129,142,145,170,173],"multi-stable":[4,146,164],"RNA":[5,75,165,185],"molecules":[6],"has":[7],"important":[8],"applications":[9],"in":[10,122],"biology,":[11],"medicine,":[12],"and":[13,89,100,117,180,191],"biotechnology.":[14],"Synthetic":[15],"approaches":[17],"profit":[18],"strongly":[19],"from":[20],"effective":[21,181],"in-silico":[22,45],"methods,":[23],"which":[24,69,187],"substantially":[25],"reduce":[26],"the":[27,48,71,115,120,127,133,140,154,168,171],"need":[28],"for":[29,107,139],"costly":[30],"wet-lab":[31],"experiments.":[32],"RESULTS:":[33],"We":[34],"devise":[35],"a":[36,40,159,177],"novel":[37],"approach":[38,64,98,182],"to":[39,158,183],"central":[41],"ingredient":[42],"most":[44],"methods:":[47],"generation":[49],"sequences":[51,76],"that":[52],"fold":[53],"well":[54,125],"into":[55],"multiple":[56],"target":[57,87],"structures.":[58],"Based":[59],"on":[60],"constraint":[61],"networks,":[62],"our":[63,97],"supports":[65],"generic":[66],"Boltzmann-weighted":[67,105],"sampling,":[68],"enables":[70],"positive":[72],"with":[77],"specific":[78],"free":[79,194],"energies":[80],"(for":[81],"each":[82],"multiple,":[84],"possibly":[85],"pseudoknotted,":[86],"structures)":[88],"GC-content.":[90],"Moreover,":[91],"we":[92,151],"study":[93],"general":[94],"properties":[95],"empirically":[99,149],"generate":[101],"biologically":[102],"relevant":[103],"multi-target":[104,136,184],"designs":[106],"an":[108],"established":[109],"benchmark.":[111],"Our":[112,193],"results":[113],"demonstrate":[114],"efficacy":[116],"feasibility":[118],"method":[121],"practice":[123],"as":[124,126],"benefits":[128],"Boltzmann":[130],"sampling":[131,137],"over":[132],"previously":[134],"best":[135],"strategy-even":[138],"case":[141],"negative":[143],"RNAs.":[147],"Besides":[148],"studies,":[150],"finally":[152],"justify":[153],"algorithmic":[155],"details":[156],"due":[157],"fundamental":[160],"theoretic":[161],"result":[162],"about":[163],"design,":[166,186],"namely":[167],"#P-hardness":[169],"counting":[172],"designs.":[174],"CONCLUSION:":[175],"introduces":[176],"novel,":[178],"flexible,":[179],"promises":[188],"broad":[189],"applicability":[190],"extensibility.":[192],"software":[195],"is":[196],"available":[197,203],"at:":[198],"https://github.com/yannponty/RNARedPrint":[199],"Supplementary":[200],"data":[201],"are":[202],"online.":[204]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
