{"id":"https://openalex.org/W2949836416","doi":"https://doi.org/10.1186/s12859-019-2778-5","title":"eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models","display_name":"eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models","publication_year":2019,"publication_date":"2019-04-16","ids":{"openalex":"https://openalex.org/W2949836416","doi":"https://doi.org/10.1186/s12859-019-2778-5","mag":"2949836416","pmid":"https://pubmed.ncbi.nlm.nih.gov/30991955"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2778-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2778-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2778-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2778-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065819354","display_name":"Juli\u00e1n Candia","orcid":"https://orcid.org/0000-0001-5793-8989"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210134534","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210134534"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Juli\u00e1n Candia","raw_affiliation_strings":["Laboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. julian.candia@nih.gov","Trans-NIH Center for Human Immunology (CHI), National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA. julian.candia@nih.gov","Laboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA"],"raw_orcid":"https://orcid.org/0000-0001-5793-8989","affiliations":[{"raw_affiliation_string":"Laboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. julian.candia@nih.gov","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Trans-NIH Center for Human Immunology (CHI), National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA. julian.candia@nih.gov","institution_ids":["https://openalex.org/I4210134534"]},{"raw_affiliation_string":"Laboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030115420","display_name":"John S. Tsang","orcid":"https://orcid.org/0000-0003-3186-3047"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210134534","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210134534"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John S Tsang","raw_affiliation_strings":["Systems Genomics and Bioinformatics Unit, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA. john.tsang@nih.gov","Trans-NIH Center for Human Immunology (CHI), National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA. john.tsang@nih.gov","Trans-NIH Center for Human Immunology (CHI), National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Genomics and Bioinformatics Unit, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA. john.tsang@nih.gov","institution_ids":["https://openalex.org/I4210134534"]},{"raw_affiliation_string":"Trans-NIH Center for Human Immunology (CHI), National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA. john.tsang@nih.gov","institution_ids":["https://openalex.org/I4210134534"]},{"raw_affiliation_string":"Trans-NIH Center for Human Immunology (CHI), National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA","institution_ids":["https://openalex.org/I4210134534","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5065819354"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210134534","https://openalex.org/I4210140884","https://openalex.org/I4210149717"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.0514,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.87489006,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"189","last_page":"189"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1331000030040741,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1331000030040741,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.11289999634027481,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14175","display_name":"Intuitionistic Fuzzy Systems Applications","score":0.051600001752376556,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/elastic-net-regularization","display_name":"Elastic net regularization","score":0.8389829397201538},{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.7243729829788208},{"id":"https://openalex.org/keywords/generalized-linear-model","display_name":"Generalized linear model","score":0.6496174335479736},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5929184556007385},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4787258803844452},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.47198253870010376},{"id":"https://openalex.org/keywords/linear-model","display_name":"Linear model","score":0.46453624963760376},{"id":"https://openalex.org/keywords/multinomial-distribution","display_name":"Multinomial distribution","score":0.44575759768486023},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4054069221019745},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.39586037397384644},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3586752712726593},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3238763213157654},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3108496367931366}],"concepts":[{"id":"https://openalex.org/C203868755","wikidata":"https://www.wikidata.org/wiki/Q5353562","display_name":"Elastic net regularization","level":3,"score":0.8389829397201538},{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.7243729829788208},{"id":"https://openalex.org/C41587187","wikidata":"https://www.wikidata.org/wiki/Q1501882","display_name":"Generalized linear model","level":2,"score":0.6496174335479736},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5929184556007385},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4787258803844452},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.47198253870010376},{"id":"https://openalex.org/C163175372","wikidata":"https://www.wikidata.org/wiki/Q3339222","display_name":"Linear model","level":2,"score":0.46453624963760376},{"id":"https://openalex.org/C192065140","wikidata":"https://www.wikidata.org/wiki/Q1147928","display_name":"Multinomial distribution","level":2,"score":0.44575759768486023},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4054069221019745},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.39586037397384644},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3586752712726593},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3238763213157654},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3108496367931366},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-2778-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2778-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2778-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30991955","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30991955","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:55c0b1f0bb1e4071ab454d748f8002fd","is_oa":true,"landing_page_url":"https://doaj.org/article/55c0b1f0bb1e4071ab454d748f8002fd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-11 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5459835","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6469092","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2778-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2778-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2778-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2949836416.pdf","grobid_xml":"https://content.openalex.org/works/W2949836416.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1772954536","https://openalex.org/W1999241380","https://openalex.org/W2013223495","https://openalex.org/W2026593185","https://openalex.org/W2097360283","https://openalex.org/W2122825543","https://openalex.org/W2160395304","https://openalex.org/W2170505850","https://openalex.org/W2392898792","https://openalex.org/W3106253486","https://openalex.org/W4294541781"],"related_works":["https://openalex.org/W2468272465","https://openalex.org/W2429564919","https://openalex.org/W757986597","https://openalex.org/W4212910148","https://openalex.org/W4210804200","https://openalex.org/W4213314600","https://openalex.org/W4285814086","https://openalex.org/W3123944750","https://openalex.org/W2787225985","https://openalex.org/W2804784031"],"abstract_inverted_index":{"BACKGROUND:":[0],"Regularized":[1],"generalized":[2],"linear":[3,104],"models":[4,139,196],"(GLMs)":[5],"are":[6,27],"popular":[7],"regression":[8],"methods":[9],"in":[10,14],"bioinformatics,":[11],"particularly":[12],"useful":[13],"scenarios":[15],"with":[16,171,305],"fewer":[17],"observations":[18],"than":[19],"parameters/features":[20],"or":[21,267],"when":[22],"many":[23],"of":[24,82,96,133,136,145,194,201,214,220,245,253,262,308],"the":[25,54,80,100,127,146,164,202,204,212,218,295,346],"features":[26,67,148,246,263,302],"correlated.":[28],"In":[29,217],"both":[30],"ridge":[31,58],"and":[32,64,88,108,130,144,168,222,229,238,256,277,283,291,332],"lasso":[33],"regularization,":[34],"feature":[35,333],"shrinkage":[36,55],"is":[37,142,186,208,318,340],"controlled":[38],"by":[39,119,184,198],"a":[40,48,76,121,134,192,251,275],"penalty":[41],"parameter":[42,50],"\u03bb.":[43],"The":[44,153,338],"elastic":[45,137],"net":[46,138],"introduces":[47],"mixing":[49],"\u03b1":[51,62,141],"to":[52,59,70,85,98,115,151,160,162,191,210,240,257,297,311,322],"tune":[53],"continuously":[56],"from":[57,329],"lasso.":[60],"Selecting":[61],"objectively":[63],"determining":[65],"which":[66,157,243],"contributed":[68],"significantly":[69,303],"prediction":[71],"after":[72],"model":[73,181],"fitting":[74],"remain":[75],"practical":[77,117],"challenge":[78],"given":[79],"paucity":[81],"available":[83,341],"software":[84,278],"evaluate":[86,211],"performance":[87,129],"statistical":[89,131],"significance.":[90],"RESULTS:":[91],"eNetXplorer":[92,232,293,317],"builds":[93],"on":[94,189,301],"top":[95],"glmnet":[97],"address":[99],"above":[101],"issues":[102],"for":[103,174,179,250,279,314],"(Gaussian),":[105],"binomial":[106],"(logistic),":[107],"multinomial":[109],"GLMs.":[110,337],"It":[111],"provides":[112,233],"new":[113],"functionalities":[114],"empower":[116],"applications":[118],"using":[120,335],"cross":[122],"validation":[123],"framework":[124,276],"that":[125,149,326],"assesses":[126],"predictive":[128,248,330],"significance":[132,178,213],"family":[135],"(as":[140,182],"varied)":[143],"corresponding":[147],"contribute":[150],"prediction.":[152],"user":[154],"can":[155,264],"select":[156],"quality":[158],"metrics":[159],"use":[161],"quantify":[163],"concordance":[165],"between":[166],"predicted":[167],"observed":[169],"values,":[170],"defaults":[172],"provided":[173],"each":[175,180],"GLM.":[176],"Statistical":[177],"defined":[183],"\u03b1)":[185],"determined":[187],"based":[188,300],"comparison":[190],"set":[193,252],"null":[195],"generated":[197],"random":[199],"permutations":[200],"response;":[203],"same":[205],"permutation-based":[206],"approach":[207],"used":[209],"individual":[215],"features.":[216],"analysis":[219,282],"large":[221],"complex":[223],"biological":[224,306],"datasets,":[225],"such":[226],"as":[227],"transcriptomic":[228],"proteomic":[230],"data,":[231],"summary":[234],"statistics,":[235],"output":[236],"tables,":[237],"visualizations":[239],"help":[241],"assess":[242],"subset(s)":[244,261],"have":[247],"value":[249],"response":[254],"measurements,":[255],"what":[258],"extent":[259],"those":[260],"be":[265],"expanded":[266],"reduced":[268],"via":[269],"regularization.":[270],"CONCLUSIONS:":[271],"This":[272],"package":[273,339],"presents":[274],"exploratory":[280],"data":[281],"visualization.":[284],"By":[285],"making":[286],"regularized":[287,336],"GLMs":[288],"more":[289],"accessible":[290],"interpretable,":[292],"guides":[294],"process":[296],"generate":[298],"hypotheses":[299],"associated":[304],"phenotypes":[307],"interest,":[309],"e.g.":[310],"identify":[312],"biomarkers":[313],"therapeutic":[315],"responsiveness.":[316],"also":[319],"generally":[320],"applicable":[321],"any":[323],"research":[324],"area":[325],"may":[327],"benefit":[328],"modeling":[331],"identification":[334],"under":[342],"GPL-3":[343],"license":[344],"at":[345],"CRAN":[347],"repository,":[348],"https://CRAN.R-project.org/package=eNetXplorer":[349],".":[350]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
