{"id":"https://openalex.org/W2930487638","doi":"https://doi.org/10.1186/s12859-019-2702-z","title":"DEvis: an R package for aggregation and visualization of differential expression data","display_name":"DEvis: an R package for aggregation and visualization of differential expression data","publication_year":2019,"publication_date":"2019-03-04","ids":{"openalex":"https://openalex.org/W2930487638","doi":"https://doi.org/10.1186/s12859-019-2702-z","mag":"2930487638","pmid":"https://pubmed.ncbi.nlm.nih.gov/30832568"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2702-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2702-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2702-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2702-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038509778","display_name":"Adam Price","orcid":"https://orcid.org/0000-0001-6114-6298"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Adam Price","raw_affiliation_strings":["Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA. ap3637@cumc.columbia.edu","Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA"],"raw_orcid":"https://orcid.org/0000-0001-6114-6298","affiliations":[{"raw_affiliation_string":"Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA. ap3637@cumc.columbia.edu","institution_ids":["https://openalex.org/I2799503643","https://openalex.org/I78577930"]},{"raw_affiliation_string":"Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009449784","display_name":"Adrian Caciula","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adrian Caciula","raw_affiliation_strings":["Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005689510","display_name":"Cheng Guo","orcid":"https://orcid.org/0000-0002-6602-8810"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cheng Guo","raw_affiliation_strings":["Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042428639","display_name":"Bohyun Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bohyun Lee","raw_affiliation_strings":["Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057631271","display_name":"Juliet Morrison","orcid":"https://orcid.org/0000-0001-7387-6351"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juliet Morrison","raw_affiliation_strings":["Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025196559","display_name":"Angela L. Rasmussen","orcid":"https://orcid.org/0000-0001-9462-3169"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Angela Rasmussen","raw_affiliation_strings":["Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090343848","display_name":"W. Ian Lipkin","orcid":"https://orcid.org/0000-0002-8768-9386"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. Ian Lipkin","raw_affiliation_strings":["Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053341127","display_name":"Komal Jain","orcid":"https://orcid.org/0000-0001-6958-468X"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Komal Jain","raw_affiliation_strings":["Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Infection and Immunity, Mailman School of Public Health of Columbia University, 722 West 168th St., New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5038509778"],"corresponding_institution_ids":["https://openalex.org/I2799503643","https://openalex.org/I78577930"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.2822,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.79721995,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"20","issue":"1","first_page":"110","last_page":"110"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.4738999903202057,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.4738999903202057,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.35199999809265137,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.02319999970495701,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7880048155784607},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6964640021324158},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5653352737426758},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48520758748054504},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.46619027853012085},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.454256534576416},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12536203861236572}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7880048155784607},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6964640021324158},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5653352737426758},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48520758748054504},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.46619027853012085},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.454256534576416},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12536203861236572}],"mesh":[{"descriptor_ui":"D000078303","descriptor_name":"Data Aggregation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078303","descriptor_name":"Data Aggregation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078303","descriptor_name":"Data Aggregation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-019-2702-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2702-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2702-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30832568","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30832568","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:ark:/13030/qt4sv7w8kt","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:1ebce512dcea48f2acdb36ae5250b2b4","is_oa":true,"landing_page_url":"https://doaj.org/article/1ebce512dcea48f2acdb36ae5250b2b4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-7 (2019)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt4sv7w8kt","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/4sv7w8kt","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics, vol 20, iss 1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5398938","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6399874","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2702-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2702-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2702-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7730559638","display_name":null,"funder_award_id":"HR0011-17-2-0009","funder_id":"https://openalex.org/F4320332180","funder_display_name":"Defense Advanced Research Projects Agency"}],"funders":[{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2930487638.pdf","grobid_xml":"https://content.openalex.org/works/W2930487638.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1981509058","https://openalex.org/W2114104545","https://openalex.org/W2126361343","https://openalex.org/W2146512944","https://openalex.org/W2179438025","https://openalex.org/W2255933029","https://openalex.org/W2262511588","https://openalex.org/W2267183746","https://openalex.org/W2557650990","https://openalex.org/W2599269106","https://openalex.org/W2606232818","https://openalex.org/W2782224331","https://openalex.org/W2950801021","https://openalex.org/W2951158909"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W2542318691","https://openalex.org/W2547096368","https://openalex.org/W2586219255"],"abstract_inverted_index":{"BACKGROUND:":[0],"Existing":[1],"tools":[2,218],"for":[3,31,87,119,183,243,286],"the":[4,57,76,120,145,171,181,244,264,269,282,291],"aggregation":[5,39,156],"and":[6,15,33,40,46,72,93,99,136,157,161,166,180,197,202,215,222,235,240,248,262,298],"visualization":[7,41],"of":[8,60,122,173,192,210,233,246,266,271],"differential":[9,61,108,123,174,287,304],"expression":[10,109,124,175,305],"data":[11,30,38,125,213],"have":[12],"discrete":[13],"functionality":[14,227],"require":[16],"that":[17,113,143,219,274],"end-users":[18],"rely":[19],"on":[20,56],"multiple":[21,154],"software":[22],"packages":[23],"with":[24,126,238],"complex":[25,149,198],"dependencies":[26],"or":[27],"manually":[28],"manipulate":[29],"analysis":[32,88,110,121,176,199,234,245,261],"interpretation.":[34],"Furthermore,":[35,186],"at":[36],"present,":[37],"are":[42],"laborious,":[43],"time":[44,71],"consuming,":[45],"subject":[47],"to":[48,68,74,91,148,295],"human":[49],"error.":[50,185],"This":[51,168],"is":[52,281],"a":[53,107,115,127,138,189,207],"serious":[54],"limitation":[55],"current":[58],"state":[59],"transcriptomic":[62,250,288],"analysis,":[63,289],"which":[64,259],"makes":[65],"it":[66,187],"necessary":[67,294],"expend":[69],"extensive":[70],"resources":[73],"reach":[75],"point":[77],"where":[78],"biological":[79],"meaning":[80,302],"can":[81],"be":[82],"interpreted.":[83],"Such":[84],"an":[85],"approach":[86],"also":[89],"leads":[90],"scattered":[92,193],"non-standardized":[94],"code,":[95],"unsystematic":[96],"project":[97,164,216,256],"management":[98,217,257],"non-reproducible":[100],"result":[101,159],"sets.":[102],"RESULTS:":[103],"Here,":[104],"we":[105],"present":[106],"toolkit,":[111],"DEvis,":[112],"provides":[114,137,188,206],"powerful,":[116],"integrated":[117],"solution":[118],"rapid":[128],"turnaround":[129],"time.":[130],"DEvis":[131,205,252],"has":[132],"simple":[133],"installation":[134],"requirements":[135],"convenient,":[139],"user-friendly":[140],"R":[141],"package":[142,280],"addresses":[144],"issues":[146],"inherent":[147],"multi-factor":[150],"experiments,":[151],"such":[152],"as":[153],"contrast":[155],"integration,":[158],"sorting":[160],"selection,":[162],"visualization,":[163,212],"management,":[165],"reproducibility.":[167],"tool":[169],"increases":[170,231],"capabilities":[172],"while":[177],"reducing":[178],"workload":[179],"potential":[182],"manual":[184],"much-needed":[190],"encapsulation":[191],"functionality,":[194],"making":[195],"large":[196,247],"more":[200],"efficient":[201],"reproducible.":[203],"CONCLUSION:":[204],"wide":[208],"range":[209],"powerful":[211],"aggregation,":[214],"provide":[220],"flexibility":[221],"speed":[223],"in":[224],"analysis.":[225],"The":[226],"provided":[228],"by":[229],"DEVis":[230],"efficiency":[232],"supplies":[236],"researchers":[237],"new":[239],"relevant":[241,301],"means":[242],"complicated":[249],"experiments.":[251],"furthermore":[253],"incorporates":[254],"automatic":[255],"capabilities,":[258],"standardizes":[260],"ensures":[263],"reproducibility":[265],"results.":[267],"After":[268],"establishment":[270],"statistical":[272],"frameworks":[273],"identify":[275],"differentially":[276],"expressed":[277],"genes,":[278],"this":[279],"next":[283],"logical":[284],"step":[285],"establishing":[290],"critical":[292],"framework":[293],"manipulate,":[296],"explore,":[297],"extract":[299],"biologically":[300],"from":[303],"data.":[306]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-07T08:38:57.713557","created_date":"2025-10-10T00:00:00"}
