{"id":"https://openalex.org/W2935492792","doi":"https://doi.org/10.1186/s12859-019-2701-0","title":"isma: an R package for the integrative analysis of mutations detected by multiple pipelines","display_name":"isma: an R package for the integrative analysis of mutations detected by multiple pipelines","publication_year":2019,"publication_date":"2019-02-28","ids":{"openalex":"https://openalex.org/W2935492792","doi":"https://doi.org/10.1186/s12859-019-2701-0","mag":"2935492792","pmid":"https://pubmed.ncbi.nlm.nih.gov/30819096"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2701-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2701-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2701-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2701-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041332204","display_name":"Noemi Di Nanni","orcid":"https://orcid.org/0000-0002-6399-321X"},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]},{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Noemi Di Nanni","raw_affiliation_strings":["Department of Industrial and Information Engineering, University of Pavia, Via Ferrata 5, 27100, Pavia, Italy","Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Industrial and Information Engineering, University of Pavia, Via Ferrata 5, 27100, Pavia, Italy","institution_ids":["https://openalex.org/I25217355"]},{"raw_affiliation_string":"Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy","institution_ids":["https://openalex.org/I197604219","https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034471018","display_name":"Marco Moscatelli","orcid":"https://orcid.org/0000-0002-6745-474X"},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Marco Moscatelli","raw_affiliation_strings":["Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy","institution_ids":["https://openalex.org/I197604219","https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036995379","display_name":"Matteo Gnocchi","orcid":null},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Matteo Gnocchi","raw_affiliation_strings":["Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy","institution_ids":["https://openalex.org/I197604219","https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088629765","display_name":"Luciano Milanesi","orcid":"https://orcid.org/0000-0002-1201-3939"},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Luciano Milanesi","raw_affiliation_strings":["Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy","institution_ids":["https://openalex.org/I197604219","https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084198389","display_name":"Ettore Mosca","orcid":"https://orcid.org/0000-0002-3102-5150"},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT","US"],"is_corresponding":true,"raw_author_name":"Ettore Mosca","raw_affiliation_strings":["Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy. ettore.mosca@itb.cnr.it","Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy"],"raw_orcid":"https://orcid.org/0000-0002-3102-5150","affiliations":[{"raw_affiliation_string":"Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy. ettore.mosca@itb.cnr.it","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy","institution_ids":["https://openalex.org/I197604219","https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5084198389"],"corresponding_institution_ids":["https://openalex.org/I197604219","https://openalex.org/I4210154278","https://openalex.org/I4210155236"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.3953,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.49943551,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"20","issue":"1","first_page":"107","last_page":"107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7067261934280396},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.584185004234314},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.540807843208313},{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.5194773077964783},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5089623928070068},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4870622456073761},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.45269542932510376},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33923545479774475},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3376651406288147},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28269293904304504},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16103410720825195},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12763115763664246},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.10594043135643005}],"concepts":[{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7067261934280396},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.584185004234314},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.540807843208313},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.5194773077964783},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5089623928070068},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4870622456073761},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.45269542932510376},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33923545479774475},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3376651406288147},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28269293904304504},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16103410720825195},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12763115763664246},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.10594043135643005},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-2701-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2701-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2701-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30819096","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30819096","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:4e3ec2957e0b4f9fb544ba339113e3a9","is_oa":true,"landing_page_url":"https://doaj.org/article/4e3ec2957e0b4f9fb544ba339113e3a9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-9 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5394668","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6394085","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2701-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2701-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2701-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2241683054","display_name":null,"funder_award_id":"PRIN 2015","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G495929010","display_name":null,"funder_award_id":"GR-2016-02363997","funder_id":"https://openalex.org/F4320321781","funder_display_name":"Ministero della Salute"},{"id":"https://openalex.org/G5634963447","display_name":null,"funder_award_id":"20157ATSLF","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G7957470013","display_name":null,"funder_award_id":"PRIN 2015 20157ATSLF","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G8843742059","display_name":null,"funder_award_id":"2015-0010","funder_id":"https://openalex.org/F4320331789","funder_display_name":"Fondazione Regionale per la Ricerca Biomedica"}],"funders":[{"id":"https://openalex.org/F4320321781","display_name":"Ministero della Salute","ror":"https://ror.org/00789fa95"},{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320326078","display_name":"Regione Lombardia","ror":null},{"id":"https://openalex.org/F4320331789","display_name":"Fondazione Regionale per la Ricerca Biomedica","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2935492792.pdf","grobid_xml":"https://content.openalex.org/works/W2935492792.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1494567425","https://openalex.org/W1965169558","https://openalex.org/W2022495797","https://openalex.org/W2114031931","https://openalex.org/W2136939537","https://openalex.org/W2138601221","https://openalex.org/W2146290346","https://openalex.org/W2149992227","https://openalex.org/W2151794156","https://openalex.org/W2153027378","https://openalex.org/W2155943701","https://openalex.org/W2162116127","https://openalex.org/W2164804555","https://openalex.org/W2192272998","https://openalex.org/W2230320310","https://openalex.org/W2304422002","https://openalex.org/W2329659234","https://openalex.org/W2473818600","https://openalex.org/W2513185582","https://openalex.org/W2553830626","https://openalex.org/W2735780204","https://openalex.org/W2739069495","https://openalex.org/W2748728020","https://openalex.org/W6629658836"],"related_works":["https://openalex.org/W3006513224","https://openalex.org/W2046456988","https://openalex.org/W2357409937","https://openalex.org/W2074430941","https://openalex.org/W2113096305","https://openalex.org/W2580722822","https://openalex.org/W2772305933","https://openalex.org/W1486338765","https://openalex.org/W4387454008","https://openalex.org/W2094213299"],"abstract_inverted_index":{"BACKGROUND:":[0],"Recent":[1],"comparative":[2],"studies":[3,172],"have":[4],"brought":[5],"to":[6,38,98,177,183],"our":[7],"attention":[8],"how":[9],"somatic":[10,70,81,126],"mutation":[11,71,112,152],"detection":[12],"from":[13,41,109],"next-generation":[14],"sequencing":[15],"data":[16],"is":[17,36,48,190],"still":[18],"an":[19,73],"open":[20],"issue":[21],"in":[22,28],"bioinformatics,":[23],"because":[24],"different":[25,140],"pipelines":[26,86],"result":[27],"a":[29,94,150,155],"low":[30],"consensus.":[31],"In":[32],"this":[33,46],"context,":[34],"it":[35],"suggested":[37],"integrate":[39,107],"results":[40,61],"multiple":[42,85],"calling":[43],"tools,":[44],"but":[45],"operation":[47],"not":[49],"trivial":[50],"and":[51,58,114,154,179],"the":[52,60,77,100,103,119,145,196],"burden":[53],"of":[54,80,96,121,142,157],"merging,":[55],"comparing,":[56],"filtering":[57,181],"explaining":[59],"demands":[62],"appropriate":[63],"software.":[64],"RESULTS:":[65],"We":[66,117],"developed":[67],"isma":[68,122,148],"(integrative":[69],"analysis),":[72],"R":[74],"package":[75,92,189],"for":[76,87,192],"integrative":[78],"analysis":[79],"mutations":[82,127],"detected":[83],"by":[84,129,170],"matched":[88],"tumor-normal":[89],"samples.":[90],"The":[91,130,188],"provides":[93],"series":[95,156],"functions":[97],"quantify":[99],"consensus,":[101],"estimate":[102],"variability,":[104,163],"underline":[105,160],"outliers,":[106],"evidences":[108],"publicly":[110],"available":[111,191],"catalogues":[113],"filter":[115],"sites.":[116,187],"illustrate":[118],"capabilities":[120],"analysing":[123],"breast":[124],"cancer":[125],"generated":[128],"Cancer":[131],"Genome":[132],"Atlas":[133],"(TCGA)":[134],"using":[135],"four":[136],"pipelines.":[137],"CONCLUSIONS:":[138],"Comparing":[139],"\"points":[141],"view\"":[143],"on":[144],"same":[146],"data,":[147],"generates":[149],"unique":[151],"catalogue":[153],"reports":[158],"that":[159],"common":[161],"patterns,":[162],"as":[164,166,176],"well":[165],"sites":[167],"already":[168],"catalogued":[169],"other":[171],"(e.g.":[173],"TCGA),":[174],"so":[175],"design":[178],"apply":[180],"strategies":[182],"screen":[184],"more":[185],"reliable":[186],"non-commercial":[193],"users":[194],"at":[195],"URL":[197],"https://www.itb.cnr.it/isma":[198],".":[199]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
