{"id":"https://openalex.org/W2908028146","doi":"https://doi.org/10.1186/s12859-019-2698-4","title":"JOA: Joint Overlap Analysis of multiple genomic interval sets","display_name":"JOA: Joint Overlap Analysis of multiple genomic interval sets","publication_year":2019,"publication_date":"2019-03-08","ids":{"openalex":"https://openalex.org/W2908028146","doi":"https://doi.org/10.1186/s12859-019-2698-4","mag":"2908028146","pmid":"https://pubmed.ncbi.nlm.nih.gov/30849961"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2698-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2698-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2698-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2698-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038578938","display_name":"Bur\u00e7ak Otlu","orcid":"https://orcid.org/0000-0002-4931-7979"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Bur\u00e7ak Otlu","raw_affiliation_strings":["Department of Computer Engineering, Middle East Technical University, Ankara, 06800, Turkey. burcak@ceng.metu.edu.tr","Department of Computer Engineering, Middle East Technical University, Ankara, 06800, Turkey"],"raw_orcid":"https://orcid.org/0000-0002-4931-7979","affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Middle East Technical University, Ankara, 06800, Turkey. burcak@ceng.metu.edu.tr","institution_ids":["https://openalex.org/I201799495"]},{"raw_affiliation_string":"Department of Computer Engineering, Middle East Technical University, Ankara, 06800, Turkey","institution_ids":["https://openalex.org/I201799495"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045764563","display_name":"Tolga Can","orcid":"https://orcid.org/0000-0002-5532-0154"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Tolga Can","raw_affiliation_strings":["Department of Computer Engineering, Middle East Technical University, Ankara, 06800, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Middle East Technical University, Ankara, 06800, Turkey","institution_ids":["https://openalex.org/I201799495"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5038578938"],"corresponding_institution_ids":["https://openalex.org/I201799495"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.161,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.56845337,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"20","issue":"1","first_page":"121","last_page":"121"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.24130000174045563,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.24130000174045563,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.23819999396800995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.07959999889135361,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7786871194839478},{"id":"https://openalex.org/keywords/segment-tree","display_name":"Segment tree","score":0.6454065442085266},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.626266598701477},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.6205216646194458},{"id":"https://openalex.org/keywords/interval","display_name":"Interval (graph theory)","score":0.6111354231834412},{"id":"https://openalex.org/keywords/intersection","display_name":"Intersection (aeronautics)","score":0.5634989738464355},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.5338640809059143},{"id":"https://openalex.org/keywords/interval-tree","display_name":"Interval tree","score":0.4643452763557434},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.4180387854576111},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.41405847668647766},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4052731394767761},{"id":"https://openalex.org/keywords/tree-structure","display_name":"Tree structure","score":0.4039819538593292},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36039167642593384},{"id":"https://openalex.org/keywords/binary-tree","display_name":"Binary tree","score":0.31301790475845337},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1517050862312317},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13769814372062683},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12173202633857727}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7786871194839478},{"id":"https://openalex.org/C94557470","wikidata":"https://www.wikidata.org/wiki/Q2377385","display_name":"Segment tree","level":5,"score":0.6454065442085266},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.626266598701477},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.6205216646194458},{"id":"https://openalex.org/C2778067643","wikidata":"https://www.wikidata.org/wiki/Q166507","display_name":"Interval (graph theory)","level":2,"score":0.6111354231834412},{"id":"https://openalex.org/C64543145","wikidata":"https://www.wikidata.org/wiki/Q162942","display_name":"Intersection (aeronautics)","level":2,"score":0.5634989738464355},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.5338640809059143},{"id":"https://openalex.org/C84927040","wikidata":"https://www.wikidata.org/wiki/Q6057306","display_name":"Interval tree","level":4,"score":0.4643452763557434},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.4180387854576111},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.41405847668647766},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4052731394767761},{"id":"https://openalex.org/C163797641","wikidata":"https://www.wikidata.org/wiki/Q2067937","display_name":"Tree structure","level":3,"score":0.4039819538593292},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36039167642593384},{"id":"https://openalex.org/C197855036","wikidata":"https://www.wikidata.org/wiki/Q380172","display_name":"Binary tree","level":2,"score":0.31301790475845337},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1517050862312317},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13769814372062683},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12173202633857727},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-019-2698-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2698-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2698-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30849961","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30849961","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:fb2fee7b21514990928aaa20e8e72932","is_oa":true,"landing_page_url":"https://doaj.org/article/fb2fee7b21514990928aaa20e8e72932","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-14 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5410006","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6408804","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:open.metu.edu.tr:11511/37230","is_oa":true,"landing_page_url":"https://hdl.handle.net/11511/37230","pdf_url":null,"source":{"id":"https://openalex.org/S4306402495","display_name":"OpenMETU (Middle East Technical University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I201799495","host_organization_name":"Middle East Technical University","host_organization_lineage":["https://openalex.org/I201799495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6408804","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6408804","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2698-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2698-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2698-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6000000238418579}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2908028146.pdf","grobid_xml":"https://content.openalex.org/works/W2908028146.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W783262033","https://openalex.org/W2020467128","https://openalex.org/W2102619694","https://openalex.org/W2119451273","https://openalex.org/W2123056040","https://openalex.org/W2132241624","https://openalex.org/W2142386149","https://openalex.org/W2149906774","https://openalex.org/W2176686025","https://openalex.org/W2183852251","https://openalex.org/W2280860630","https://openalex.org/W2525876451","https://openalex.org/W2595956553","https://openalex.org/W2619541082","https://openalex.org/W2798750837"],"related_works":["https://openalex.org/W2107381954","https://openalex.org/W4244673516","https://openalex.org/W1940340318","https://openalex.org/W2359095153","https://openalex.org/W2227684440","https://openalex.org/W1979994068","https://openalex.org/W2067642082","https://openalex.org/W2227630426","https://openalex.org/W2549663625","https://openalex.org/W1566044635"],"abstract_inverted_index":{"BACKGROUND:":[0],"Next-generation":[1],"sequencing":[2],"(NGS)":[3],"technologies":[4],"have":[5],"produced":[6],"large":[7],"volumes":[8],"of":[9,24,67,120,154,184,214],"genomic":[10,17,20,69],"data.":[11],"One":[12],"common":[13],"operation":[14],"on":[15,97,115],"heterogeneous":[16],"data":[18,111,134],"is":[19,107,242,270,281],"interval":[21,49,70,88,149],"intersection.":[22],"Most":[23],"the":[25,98,173],"existing":[26],"tools":[27,151,232],"impose":[28],"restrictions":[29],"such":[30],"as":[31,78,264],"not":[32],"allowing":[33],"nested":[34],"intervals":[35,38,93],"or":[36,47,263],"requiring":[37],"to":[39,244],"be":[40,258],"sorted":[41],"when":[42],"finding":[43],"overlaps":[44],"in":[45,72,170,212],"two":[46],"more":[48,252],"sets.":[50],"RESULTS:":[51],"We":[52,74,124,136,167,189,220],"proposed":[53,102],"segment":[54,59,104,122,199,203],"tree":[55,60,105,200,204],"(ST)":[56],"and":[57,90,117,128,140,146,157,196,201,217,230,233,241],"indexed":[58,103,202],"forest":[61,106,205],"(ISTF)":[62],"based":[63],"solutions":[64],"for":[65,131,152,158,228],"intersection":[66,150],"multiple":[68],"sets":[71,89],"parallel.":[73],"developed":[75],"these":[76],"methods":[77,206],"a":[79,108,121,265],"tool,":[80],"Joint":[81],"Overlap":[82],"Analysis":[83],"(JOA),":[84],"which":[85,113,176],"takes":[86],"n":[87],"finds":[91],"overlapping":[92],"with":[94,143,147,193,209,272],"no":[95],"constraints":[96],"given":[99],"intervals.":[100],"The":[101],"novel":[109,133],"composite":[110],"structure,":[112],"leverages":[114],"indexing":[116],"natural":[118],"binning":[119],"tree.":[123],"also":[125,221],"presented":[126],"construction":[127],"search":[129],"algorithms":[130],"this":[132],"structure.":[135],"compared":[137,190],"JOA":[138,141,169,191,194,229,236,256,269],"ST":[139,192],"ISTF":[142,195],"each":[144,210],"other,":[145],"other":[148,211,231],"verification":[153],"its":[155,247,261],"correctness":[156],"showing":[159],"that":[160,198,235],"it":[161],"attains":[162],"comparable":[163,208,238],"execution":[164,215,224,239],"times.":[165],"CONCLUSIONS:":[166],"implemented":[168],"Java":[171],"using":[172,251,260],"fork/join":[174],"framework":[175],"speeds":[177],"up":[178],"parallel":[179],"processing":[180],"by":[181,250],"taking":[182],"advantage":[183],"all":[185],"available":[186,271],"processor":[187],"cores.":[188],"showed":[197],"are":[207],"terms":[213],"time":[216,225,240,249],"memory":[218],"usage.":[219],"carried":[222],"out":[223],"comparison":[226],"analysis":[227],"demonstrated":[234],"has":[237],"able":[243],"further":[245],"reduce":[246],"running":[248],"processors":[253],"per":[254],"node.":[255],"can":[257],"run":[259],"GUI":[262],"command":[266],"line":[267],"tool.":[268],"source":[273],"code":[274],"at":[275,283],"https://github.com/burcakotlu/JOA/":[276],".":[277],"A":[278],"user":[279],"manual":[280],"provided":[282],"https://joa.readthedocs.org.":[284]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
