{"id":"https://openalex.org/W2920456005","doi":"https://doi.org/10.1186/s12859-019-2660-5","title":"MultiDomainBenchmark: a multi-domain query and subject database suite","display_name":"MultiDomainBenchmark: a multi-domain query and subject database suite","publication_year":2019,"publication_date":"2019-02-14","ids":{"openalex":"https://openalex.org/W2920456005","doi":"https://doi.org/10.1186/s12859-019-2660-5","mag":"2920456005","pmid":"https://pubmed.ncbi.nlm.nih.gov/30764761"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2660-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2660-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2660-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2660-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065514255","display_name":"Hyrum Carroll","orcid":"https://orcid.org/0000-0002-1917-2131"},"institutions":[{"id":"https://openalex.org/I199172307","display_name":"Columbus State University","ror":"https://ror.org/002nf6z37","country_code":"US","type":"education","lineage":["https://openalex.org/I199172307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hyrum D. Carroll","raw_affiliation_strings":["TSYS School of Computer Science, Columbus State University, 4225 University Avenue, Columbus, 31907, GA, USA. carroll_hyrum@columbusstate.edu","TSYS School of Computer Science, Columbus State University, 4225 University Avenue, Columbus, 31907, GA, USA"],"raw_orcid":"https://orcid.org/0000-0002-1917-2131","affiliations":[{"raw_affiliation_string":"TSYS School of Computer Science, Columbus State University, 4225 University Avenue, Columbus, 31907, GA, USA. carroll_hyrum@columbusstate.edu","institution_ids":["https://openalex.org/I199172307"]},{"raw_affiliation_string":"TSYS School of Computer Science, Columbus State University, 4225 University Avenue, Columbus, 31907, GA, USA","institution_ids":["https://openalex.org/I199172307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039386346","display_name":"John L. Spouge","orcid":"https://orcid.org/0000-0001-6207-1419"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John L. Spouge","raw_affiliation_strings":["National Center for Biotechnology Information, Bethesda, National Institutes of Health, 8600 Rockville Pike, Bethesda, 20894, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, Bethesda, National Institutes of Health, 8600 Rockville Pike, Bethesda, 20894, MD, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024529262","display_name":"Mileidy W. Gonzalez","orcid":"https://orcid.org/0000-0002-2021-1046"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mileidy Gonzalez","raw_affiliation_strings":["National Center for Biotechnology Information, Bethesda, National Institutes of Health, 8600 Rockville Pike, Bethesda, 20894, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, Bethesda, National Institutes of Health, 8600 Rockville Pike, Bethesda, 20894, MD, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065514255"],"corresponding_institution_ids":["https://openalex.org/I199172307"],"apc_list":{"value":2170,"currency":"USD","value_usd":2170},"apc_paid":{"value":2170,"currency":"USD","value_usd":2170},"fwci":0.1539,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.4703708,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":95},"biblio":{"volume":"20","issue":"1","first_page":"77","last_page":"77"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8051999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8051999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.048700001090765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.02879999950528145,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.7496225833892822},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7084751725196838},{"id":"https://openalex.org/keywords/subject","display_name":"Subject (documents)","score":0.5438944697380066},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5338377356529236},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4976833164691925},{"id":"https://openalex.org/keywords/web-search-query","display_name":"Web search query","score":0.46912407875061035},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45950931310653687},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.321347713470459},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.152454674243927},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.07472887635231018},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0710141658782959}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.7496225833892822},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7084751725196838},{"id":"https://openalex.org/C2777855551","wikidata":"https://www.wikidata.org/wiki/Q12310021","display_name":"Subject (documents)","level":2,"score":0.5438944697380066},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5338377356529236},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4976833164691925},{"id":"https://openalex.org/C164120249","wikidata":"https://www.wikidata.org/wiki/Q995982","display_name":"Web search query","level":3,"score":0.46912407875061035},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45950931310653687},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.321347713470459},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.152454674243927},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.07472887635231018},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0710141658782959},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-019-2660-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2660-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2660-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30764761","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30764761","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5380128","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6376684","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6376684","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6376684","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:csuepress.columbusstate.edu:bibliography_faculty-3851","is_oa":false,"landing_page_url":"https://csuepress.columbusstate.edu/bibliography_faculty/2803","pdf_url":null,"source":{"id":"https://openalex.org/S4377196711","display_name":"CSU ePress (Columbus State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I199172307","host_organization_name":"Columbus State University","host_organization_lineage":["https://openalex.org/I199172307"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Bibliography","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:051d243acb83439ca6fd2689ba46391c","is_oa":false,"landing_page_url":"https://doaj.org/article/051d243acb83439ca6fd2689ba46391c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-9 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2660-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2660-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2660-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2920456005.pdf","grobid_xml":"https://content.openalex.org/works/W2920456005.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W80140380","https://openalex.org/W1972631150","https://openalex.org/W1972718882","https://openalex.org/W1990056477","https://openalex.org/W2002664886","https://openalex.org/W2004707197","https://openalex.org/W2036696353","https://openalex.org/W2046892081","https://openalex.org/W2062296203","https://openalex.org/W2069458148","https://openalex.org/W2073785345","https://openalex.org/W2084787613","https://openalex.org/W2096096221","https://openalex.org/W2096525273","https://openalex.org/W2099946731","https://openalex.org/W2107757325","https://openalex.org/W2112792893","https://openalex.org/W2116574778","https://openalex.org/W2120691184","https://openalex.org/W2130479394","https://openalex.org/W2131889225","https://openalex.org/W2133070552","https://openalex.org/W2133312664","https://openalex.org/W2133657429","https://openalex.org/W2138122982","https://openalex.org/W2138459937","https://openalex.org/W2139271731","https://openalex.org/W2145155821","https://openalex.org/W2153544371","https://openalex.org/W2158714788","https://openalex.org/W2161072217","https://openalex.org/W2163910672","https://openalex.org/W2169686324","https://openalex.org/W2172016350","https://openalex.org/W2224056471","https://openalex.org/W2410091626","https://openalex.org/W2739999456","https://openalex.org/W4237629094","https://openalex.org/W4250168311","https://openalex.org/W6603307696"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W352609212","https://openalex.org/W1511772879","https://openalex.org/W4379115841","https://openalex.org/W4388258507","https://openalex.org/W4200340037","https://openalex.org/W608917066","https://openalex.org/W2955606923"],"abstract_inverted_index":{"BACKGROUND:":[0],"Genetic":[1],"sequence":[2,15,107,158],"database":[3,117],"retrieval":[4],"benchmarks":[5,23],"play":[6],"an":[7,178],"essential":[8],"role":[9],"in":[10,59,69],"evaluating":[11],"the":[12,26,38,97,148,152],"performance":[13,153],"of":[14,42,100,119,154],"searching":[16,108,159],"tools.":[17,109],"To":[18],"date,":[19],"all":[20],"phylogenetically":[21,135],"diverse":[22],"known":[24],"to":[25,74,84,92,103,150,174],"authors":[27],"include":[28],"only":[29],"query":[30],"sequences":[31],"with":[32],"single":[33,53],"protein":[34,43,137],"domains.":[35],"Domains":[36],"are":[37,79],"primary":[39],"building":[40],"blocks":[41],"structure":[44],"and":[45,78,124,133,142,162],"function.":[46],"Independently,":[47],"each":[48],"domain":[49,66,143,182],"can":[50],"fulfill":[51],"a":[52,116,167,181],"function,":[54],"but":[55],"most":[56],"proteins":[57,102,173],"(>80%":[58],"Metazoa)":[60],"exist":[61],"as":[62],"multi-domain":[63,98,122,172],"proteins.":[64],"Multiple":[65],"units":[67],"combine":[68],"various":[70],"arrangements":[71],"or":[72],"architectures":[73],"create":[75,93],"different":[76],"functions":[77],"often":[80],"under":[81],"evolutionary":[82],"pressures":[83],"yield":[85],"new":[86],"ones.":[87],"Thus,":[88],"it":[89],"is":[90,186],"crucial":[91],"gold":[94],"standards":[95],"reflecting":[96],"complexity":[99],"real":[101],"more":[104],"accurately":[105],"evaluate":[106,151,175],"DESCRIPTION:":[110],"This":[111],"work":[112],"introduces":[113],"MultiDomainBenchmark":[114],"(MDB),":[115],"suite":[118],"412":[120],"curated":[121],"queries":[123],"227,512":[125],"target":[126],"sequences,":[127],"representing":[128],"at":[129,189],"least":[130],"5108":[131],"species":[132],"1123":[134],"divergent":[136],"families,":[138],"their":[139],"relevancy":[140],"annotation,":[141],"location.":[144],"Here,":[145],"we":[146,165],"use":[147],"benchmark":[149],"two":[155],"commonly":[156],"used":[157],"tools,":[160],"BLAST/PSI-BLAST":[161],"HMMER.":[163],"Additionally,":[164],"introduce":[166],"novel":[168],"classification":[169],"technique":[170],"for":[171],"how":[176],"well":[177],"algorithm":[179],"recovers":[180],"architecture.":[183],"CONCLUSION:":[184],"MDB":[185],"publicly":[187],"available":[188],"http://csc.columbusstate.edu/carroll/MDB/":[190],".":[191]},"counts_by_year":[{"year":2021,"cited_by_count":2}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
