{"id":"https://openalex.org/W2913593516","doi":"https://doi.org/10.1186/s12859-019-2607-x","title":"BioReader: a text mining tool for performing classification of biomedical literature","display_name":"BioReader: a text mining tool for performing classification of biomedical literature","publication_year":2019,"publication_date":"2019-02-01","ids":{"openalex":"https://openalex.org/W2913593516","doi":"https://doi.org/10.1186/s12859-019-2607-x","mag":"2913593516","pmid":"https://pubmed.ncbi.nlm.nih.gov/30717659"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2607-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2607-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2607-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2607-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068182112","display_name":"Christian Simon","orcid":"https://orcid.org/0000-0002-5866-5967"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I189090001","display_name":"Novo Nordisk (Denmark)","ror":"https://ror.org/0435rc536","country_code":"DK","type":"company","lineage":["https://openalex.org/I189090001","https://openalex.org/I2801134892","https://openalex.org/I4210159963"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Christian Simon","raw_affiliation_strings":["Disease Systems Biology, Novo Nordisk Center for Protein Research, University of Copenhagen, 2200, Copenhagen, Denmark"],"affiliations":[{"raw_affiliation_string":"Disease Systems Biology, Novo Nordisk Center for Protein Research, University of Copenhagen, 2200, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696","https://openalex.org/I189090001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044875949","display_name":"Kristian Davidsen","orcid":"https://orcid.org/0000-0002-3821-6902"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Kristian Davidsen","raw_affiliation_strings":["Department of Health Technology, Technical University of Denmark, 2800, Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Health Technology, Technical University of Denmark, 2800, Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103836124","display_name":"Christina Hansen","orcid":null},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Christina Hansen","raw_affiliation_strings":["Department of Health Technology, Technical University of Denmark, 2800, Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Health Technology, Technical University of Denmark, 2800, Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108546910","display_name":"Emily Seymour","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emily Seymour","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, La Jolla, CA, 92037, USA"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, La Jolla, CA, 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052304736","display_name":"Mike Bogetofte Barnkob","orcid":"https://orcid.org/0000-0002-5892-1174"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210124851","display_name":"MRC Human Immunology Unit","ror":"https://ror.org/02kcpr174","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I4210124851","https://openalex.org/I90344618","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mike Bogetofte Barnkob","raw_affiliation_strings":["MRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, OX3 9DU, UK"],"affiliations":[{"raw_affiliation_string":"MRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, OX3 9DU, UK","institution_ids":["https://openalex.org/I4210124851","https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071073233","display_name":"Lars R\u00f8nn Olsen","orcid":"https://orcid.org/0000-0002-6725-7850"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Lars R\u00f8nn Olsen","raw_affiliation_strings":["Department of Health Technology, Technical University of Denmark, 2800, Lyngby, Denmark. lro@bioinformatics.dtu.dk","Department of Health Technology, Technical University of Denmark, 2800, Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Health Technology, Technical University of Denmark, 2800, Lyngby, Denmark. lro@bioinformatics.dtu.dk","institution_ids":[]},{"raw_affiliation_string":"Department of Health Technology, Technical University of Denmark, 2800, Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5068182112"],"corresponding_institution_ids":["https://openalex.org/I124055696","https://openalex.org/I189090001"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.9506,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.9462579,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"19","issue":"S13","first_page":"57","last_page":"57"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9053999781608582,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5667956471443176},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.554222822189331},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.48321330547332764},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4668921232223511},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44460245966911316},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4432278275489807},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43810778856277466},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3127552568912506},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21604865789413452},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09324416518211365},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06117787957191467}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5667956471443176},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.554222822189331},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.48321330547332764},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4668921232223511},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44460245966911316},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4432278275489807},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43810778856277466},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3127552568912506},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21604865789413452},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09324416518211365},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06117787957191467},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055811","descriptor_name":"Journal Impact Factor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055811","descriptor_name":"Journal Impact Factor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055811","descriptor_name":"Journal Impact Factor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-019-2607-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2607-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2607-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30717659","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30717659","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7394276","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7394276","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/e39ba920-f137-44cd-897d-afa83a6beba3","is_oa":true,"landing_page_url":"https://curis.ku.dk/portal/da/publications/bioreader(e39ba920-f137-44cd-897d-afa83a6beba3).html","pdf_url":"https://curis.ku.dk/ws/files/223924370/document_4.pdf","source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Simon , C , Davidsen , K , Hansen , C , Seymour , E , Barnkob , M B & Olsen , L R 2019 , ' BioReader : a text mining tool for performing classification of biomedical literature ' , BMC Bioinformatics , vol. 19 , no. Suppl. 13 , 57 . https://doi.org/10.1186/s12859-019-2607-x","raw_type":"contributionToPeriodical"},{"id":"pmh:oai:doaj.org/article:6332f19baaaa4cba9ecd694c7f16e909","is_oa":true,"landing_page_url":"https://doaj.org/article/6332f19baaaa4cba9ecd694c7f16e909","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss S13, Pp 165-170 (2019)","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/484613c3-ec11-4ff2-b86b-c0bf620dfceb","is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/484613c3-ec11-4ff2-b86b-c0bf620dfceb","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Simon , C , Davidsen , K , Hansen , C , Seymour , E , Barnkob , M B &amp; Olsen , L R 2019 , ' BioReader: a text mining tool for performing classification of biomedical literature ' , BMC Bioinformatics , vol. 19 , no. S13 , 57 , pp. 165-170 . https://doi.org/10.1186/s12859-019-2607-x","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/e39ba920-f137-44cd-897d-afa83a6beba3","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/e39ba920-f137-44cd-897d-afa83a6beba3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Simon , C , Davidsen , K , Hansen , C , Seymour , E , Barnkob , M B & Olsen , L R 2019 , ' BioReader : a text mining tool for performing classification of biomedical literature ' , BMC Bioinformatics , vol. 19 , no. Suppl. 13 , 57 . https://doi.org/10.1186/s12859-019-2607-x","raw_type":"contributionToPeriodical"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2607-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2607-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-019-2607-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5899999737739563,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G3386953240","display_name":null,"funder_award_id":"R181-2014-3761","funder_id":"https://openalex.org/F4320321999","funder_display_name":"Lundbeckfonden"},{"id":"https://openalex.org/G7189701109","display_name":null,"funder_award_id":"4184-00211B","funder_id":"https://openalex.org/F4320310484","funder_display_name":"Teknologi og Produktion, Det Frie Forskningsr\u00e5d"}],"funders":[{"id":"https://openalex.org/F4320310484","display_name":"Teknologi og Produktion, Det Frie Forskningsr\u00e5d","ror":"https://ror.org/03ge1nb22"},{"id":"https://openalex.org/F4320321999","display_name":"Lundbeckfonden","ror":"https://ror.org/03hz8wd80"},{"id":"https://openalex.org/F4320327918","display_name":"H. Lundbeck A/S","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2913593516.pdf","grobid_xml":"https://content.openalex.org/works/W2913593516.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W202303397","https://openalex.org/W1516171683","https://openalex.org/W1543448539","https://openalex.org/W1597406287","https://openalex.org/W1967494780","https://openalex.org/W1972978214","https://openalex.org/W1976473459","https://openalex.org/W1977728350","https://openalex.org/W1980801609","https://openalex.org/W1985258161","https://openalex.org/W1992381544","https://openalex.org/W1996002274","https://openalex.org/W2008056655","https://openalex.org/W2028339001","https://openalex.org/W2071908232","https://openalex.org/W2097360283","https://openalex.org/W2128601422","https://openalex.org/W2149706766","https://openalex.org/W2157875785","https://openalex.org/W2161793142","https://openalex.org/W2168828891","https://openalex.org/W2514650788","https://openalex.org/W2592432144","https://openalex.org/W2911964244","https://openalex.org/W2912934387","https://openalex.org/W4212883601","https://openalex.org/W4237293127","https://openalex.org/W4244934246","https://openalex.org/W4294541781"],"related_works":["https://openalex.org/W3185751515","https://openalex.org/W1479703980","https://openalex.org/W2749535755","https://openalex.org/W1553529581","https://openalex.org/W4206039273","https://openalex.org/W4232119327","https://openalex.org/W2911489562","https://openalex.org/W2134429551","https://openalex.org/W3183808544","https://openalex.org/W2188854577"],"abstract_inverted_index":{"BioReader":[0,39],"supports":[1],"data":[2,32],"and":[3,22,33,46],"information":[4,34],"collection":[5],"by":[6],"implementing":[7],"text":[8],"mining-based":[9],"classification":[10],"of":[11,27,31],"primary":[12],"biomedical":[13],"literature":[14,53],"in":[15,35,54],"a":[16,64],"web":[17,65],"interface,":[18],"thus":[19],"enabling":[20],"curators":[21],"researchers":[23],"to":[24],"take":[25],"advantage":[26],"the":[28,36,48],"vast":[29],"amounts":[30],"published":[37],"literature.":[38],"outperforms":[40],"existing":[41],"tools":[42],"with":[43],"similar":[44],"functionalities":[45],"expands":[47],"features":[49],"used":[50],"for":[51],"mining":[52],"database":[55],"curation":[56],"efforts.":[57],"The":[58],"tool":[59],"is":[60],"freely":[61],"available":[62],"as":[63],"service":[66],"at":[67],"http://www.cbs.dtu.dk/services/BioReader.":[68]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
