{"id":"https://openalex.org/W2887672952","doi":"https://doi.org/10.1186/s12859-019-2604-0","title":"From POS tagging to dependency parsing for biomedical event extraction","display_name":"From POS tagging to dependency parsing for biomedical event extraction","publication_year":2019,"publication_date":"2019-02-12","ids":{"openalex":"https://openalex.org/W2887672952","doi":"https://doi.org/10.1186/s12859-019-2604-0","mag":"2887672952","pmid":"https://pubmed.ncbi.nlm.nih.gov/30755172"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2604-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2604-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2604-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2604-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063933953","display_name":"Dat Quoc Nguyen","orcid":"https://orcid.org/0000-0001-8214-2878"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Dat Quoc Nguyen","raw_affiliation_strings":["School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia. dqnguyen@unimelb.edu.au","School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia"],"raw_orcid":"https://orcid.org/0000-0001-8214-2878","affiliations":[{"raw_affiliation_string":"School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia. dqnguyen@unimelb.edu.au","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067214173","display_name":"Karin Verspoor","orcid":"https://orcid.org/0000-0002-8661-1544"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Karin Verspoor","raw_affiliation_strings":["School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5063933953"],"corresponding_institution_ids":["https://openalex.org/I165779595"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.8804,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.8590864,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"72","last_page":"72"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.840399980545044,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.840399980545044,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.09080000221729279,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.017899999395012856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.9047009944915771},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7273640632629395},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.6945713758468628},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6303830146789551},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.628548800945282},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.625961184501648},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6246309876441956},{"id":"https://openalex.org/keywords/dependency-grammar","display_name":"Dependency grammar","score":0.6102092266082764},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5924869775772095},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.5825645327568054},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.5443385243415833},{"id":"https://openalex.org/keywords/dependency","display_name":"Dependency (UML)","score":0.4561939835548401},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4366138279438019},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41306114196777344},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.3960784375667572},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.15562492609024048}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.9047009944915771},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7273640632629395},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.6945713758468628},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6303830146789551},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.628548800945282},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.625961184501648},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6246309876441956},{"id":"https://openalex.org/C164883195","wikidata":"https://www.wikidata.org/wiki/Q674834","display_name":"Dependency grammar","level":3,"score":0.6102092266082764},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5924869775772095},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.5825645327568054},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.5443385243415833},{"id":"https://openalex.org/C19768560","wikidata":"https://www.wikidata.org/wiki/Q320727","display_name":"Dependency (UML)","level":2,"score":0.4561939835548401},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4366138279438019},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41306114196777344},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.3960784375667572},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.15562492609024048},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013060","descriptor_name":"Speech","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013060","descriptor_name":"Speech","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013060","descriptor_name":"Speech","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014825","descriptor_name":"Vocabulary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014825","descriptor_name":"Vocabulary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014825","descriptor_name":"Vocabulary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/s12859-019-2604-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2604-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2604-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30755172","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30755172","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:1808.03731","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1808.03731","pdf_url":"https://arxiv.org/pdf/1808.03731","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/221193","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/221193","pdf_url":"http://hdl.handle.net/11343/221193","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:1aa0e11add694c169f70daba4d37e415","is_oa":true,"landing_page_url":"https://doaj.org/article/1aa0e11add694c169f70daba4d37e415","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-13 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5378511","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6373122","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/27555285","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6373122","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6373122","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2604-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2604-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2604-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7900000214576721,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2887672952.pdf","grobid_xml":"https://content.openalex.org/works/W2887672952.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W76749362","https://openalex.org/W102233799","https://openalex.org/W122290181","https://openalex.org/W192665053","https://openalex.org/W1491975949","https://openalex.org/W1632114991","https://openalex.org/W1883682364","https://openalex.org/W1940872118","https://openalex.org/W1970849810","https://openalex.org/W1996430422","https://openalex.org/W2032566933","https://openalex.org/W2055032581","https://openalex.org/W2064675550","https://openalex.org/W2075322787","https://openalex.org/W2075655036","https://openalex.org/W2094061585","https://openalex.org/W2105549195","https://openalex.org/W2121227244","https://openalex.org/W2125712079","https://openalex.org/W2127147316","https://openalex.org/W2128634885","https://openalex.org/W2131774270","https://openalex.org/W2134967412","https://openalex.org/W2144499799","https://openalex.org/W2147880316","https://openalex.org/W2148130205","https://openalex.org/W2153579005","https://openalex.org/W2154213504","https://openalex.org/W2170953709","https://openalex.org/W2250471514","https://openalex.org/W2250861254","https://openalex.org/W2251988705","https://openalex.org/W2252147815","https://openalex.org/W2296283641","https://openalex.org/W2301095666","https://openalex.org/W2469900699","https://openalex.org/W2515248967","https://openalex.org/W2552110825","https://openalex.org/W2612364175","https://openalex.org/W2616177386","https://openalex.org/W2734608416","https://openalex.org/W2739827909","https://openalex.org/W2740840489","https://openalex.org/W2804037374","https://openalex.org/W2845344333","https://openalex.org/W2903382683","https://openalex.org/W2962902328","https://openalex.org/W2963020213","https://openalex.org/W2963571341","https://openalex.org/W2963940534","https://openalex.org/W2964090065","https://openalex.org/W3101763502","https://openalex.org/W3121547375","https://openalex.org/W4294170691","https://openalex.org/W6678277124"],"related_works":["https://openalex.org/W2251084681","https://openalex.org/W287510790","https://openalex.org/W2098784136","https://openalex.org/W2968543375","https://openalex.org/W2571817549","https://openalex.org/W1541975828","https://openalex.org/W2888625260","https://openalex.org/W3035970863","https://openalex.org/W2572241437","https://openalex.org/W4379379356"],"abstract_inverted_index":{"BACKGROUND:":[0],"Given":[1],"the":[2,20,47,87,101,122,126,145,196,202,221],"importance":[3],"of":[4,23,43,71,89,108,147,204],"relation":[5],"or":[6],"event":[7,156,171,210],"extraction":[8,28,172,211],"from":[9],"biomedical":[10,44,81,102,132,155,197,209],"research":[11],"publications":[12],"to":[13,25,36,40,143],"support":[14],"knowledge":[15],"capture":[16],"and":[17,19,60,75,84,135,158,185,192,199],"synthesis,":[18],"strong":[21],"dependency":[22,76,193],"approaches":[24,39],"this":[26,112],"information":[27],"task":[29],"on":[30,78,111,129,154],"syntactic":[31,41],"information,":[32],"it":[33],"is":[34,93,114],"valuable":[35],"understand":[37],"which":[38],"processing":[42,69],"text":[45],"have":[46,176],"highest":[48],"performance.":[49,173],"RESULTS:":[50],"We":[51,137,175,219],"perform":[52,139],"an":[53],"empirical":[54,180],"study":[55,181],"comparing":[56,182],"state-of-the-art":[57],"traditional":[58,183],"feature-based":[59,127,184],"neural":[61,109,123,186],"network-based":[62,187],"models":[63,110,124,128,149,188,223],"for":[64,189,207],"two":[65,79,130],"core":[66],"natural":[67],"language":[68],"tasks":[70],"part-of-speech":[72],"(POS)":[73],"tagging":[74,191],"parsing":[77,163,194],"benchmark":[80,131],"corpora,":[82],"GENIA":[83,134],"CRAFT.":[85,136],"To":[86],"best":[88],"our":[90],"knowledge,":[91],"there":[92],"no":[94,105],"recent":[95],"work":[96],"making":[97],"such":[98],"comparisons":[99],"in":[100,120,150,195],"context;":[103],"specifically":[104],"detailed":[106,179],"analysis":[107],"data":[113],"available.":[115],"Experimental":[116],"results":[117],"show":[118,159],"that":[119,160],"general,":[121],"outperform":[125],"corpora":[133],"also":[138,200],"a":[140,151,178,208],"task-oriented":[141],"evaluation":[142],"investigate":[144],"influences":[146],"these":[148],"downstream":[152,212],"application":[153],"extraction,":[157],"better":[161,169],"intrinsic":[162],"performance":[164],"does":[165],"not":[166],"always":[167],"imply":[168],"extrinsic":[170],"CONCLUSION:":[174],"presented":[177],"POS":[190],"context,":[198],"investigated":[201],"influence":[203],"parser":[205],"selection":[206],"task.":[213],"AVAILABILITY":[214],"OF":[215],"DATA":[216],"AND":[217],"MATERIALS:":[218],"make":[220],"retrained":[222],"available":[224],"at":[225],"https://github.com/datquocnguyen/BioPosDep":[226],".":[227]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
