{"id":"https://openalex.org/W2913720644","doi":"https://doi.org/10.1186/s12859-019-2601-3","title":"AMYCO: evaluation of mutational impact on prion-like proteins aggregation propensity","display_name":"AMYCO: evaluation of mutational impact on prion-like proteins aggregation propensity","publication_year":2019,"publication_date":"2019-01-14","ids":{"openalex":"https://openalex.org/W2913720644","doi":"https://doi.org/10.1186/s12859-019-2601-3","mag":"2913720644","pmid":"https://pubmed.ncbi.nlm.nih.gov/30642249"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-2601-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2601-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2601-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2601-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002785720","display_name":"Valent\u00edn Iglesias","orcid":"https://orcid.org/0000-0002-6133-0869"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Valentin Iglesias","raw_affiliation_strings":["Departament de Bioqu\u00edmica i Biologia Molecular, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain","Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament de Bioqu\u00edmica i Biologia Molecular, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain","institution_ids":["https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001996210","display_name":"Oscar Conchillo\u2010Sol\u00e9","orcid":"https://orcid.org/0000-0003-4266-246X"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Oscar Conchillo-Sole","raw_affiliation_strings":["Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain","institution_ids":["https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066260202","display_name":"Cristina Batlle","orcid":"https://orcid.org/0000-0003-4903-831X"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Cristina Batlle","raw_affiliation_strings":["Departament de Bioqu\u00edmica i Biologia Molecular, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain","Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament de Bioqu\u00edmica i Biologia Molecular, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain","institution_ids":["https://openalex.org/I123044942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025858582","display_name":"Salvador Ventura","orcid":"https://orcid.org/0000-0002-9652-6351"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Salvador Ventura","raw_affiliation_strings":["Departament de Bioqu\u00edmica i Biologia Molecular, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain. salvador.ventura@uab.cat","Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain. salvador.ventura@uab.cat","Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain"],"raw_orcid":"https://orcid.org/0000-0002-9652-6351","affiliations":[{"raw_affiliation_string":"Departament de Bioqu\u00edmica i Biologia Molecular, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain. salvador.ventura@uab.cat","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain. salvador.ventura@uab.cat","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Institut de Biotecnologia i Biomedicina, Universitat Aut\u00f2noma de Barcelona, Bellaterra, 08193, Spain","institution_ids":["https://openalex.org/I123044942"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5025858582"],"corresponding_institution_ids":["https://openalex.org/I123044942"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.4086,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.81196573,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"24","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11335","display_name":"Prion Diseases and Protein Misfolding","score":0.8371999859809875,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11335","display_name":"Prion Diseases and Protein Misfolding","score":0.8371999859809875,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10086","display_name":"Alzheimer's disease research and treatments","score":0.05999999865889549,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.016899999231100082,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6132555603981018},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5740200877189636},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.5543144941329956},{"id":"https://openalex.org/keywords/protein-aggregation","display_name":"Protein aggregation","score":0.5180642604827881},{"id":"https://openalex.org/keywords/amyloid","display_name":"Amyloid (mycology)","score":0.5155436992645264},{"id":"https://openalex.org/keywords/fungal-prion","display_name":"Fungal prion","score":0.47681137919425964},{"id":"https://openalex.org/keywords/amino-acid-residue","display_name":"Amino acid residue","score":0.4486866891384125},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.44663354754447937},{"id":"https://openalex.org/keywords/prion-protein","display_name":"Prion protein","score":0.43384748697280884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3835078179836273},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.34775644540786743},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.271342933177948},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23791468143463135},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16645681858062744},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.14071518182754517},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.09493786096572876}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6132555603981018},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5740200877189636},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.5543144941329956},{"id":"https://openalex.org/C136238340","wikidata":"https://www.wikidata.org/wiki/Q7251455","display_name":"Protein aggregation","level":2,"score":0.5180642604827881},{"id":"https://openalex.org/C2777633098","wikidata":"https://www.wikidata.org/wiki/Q2736051","display_name":"Amyloid (mycology)","level":2,"score":0.5155436992645264},{"id":"https://openalex.org/C118963712","wikidata":"https://www.wikidata.org/wiki/Q5509170","display_name":"Fungal prion","level":4,"score":0.47681137919425964},{"id":"https://openalex.org/C2994376932","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Amino acid residue","level":4,"score":0.4486866891384125},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.44663354754447937},{"id":"https://openalex.org/C3019804061","wikidata":"https://www.wikidata.org/wiki/Q14881255","display_name":"Prion protein","level":3,"score":0.43384748697280884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3835078179836273},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.34775644540786743},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.271342933177948},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23791468143463135},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16645681858062744},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.14071518182754517},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.09493786096572876},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072002","descriptor_name":"Prion Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000072002","descriptor_name":"Prion Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000072002","descriptor_name":"Prion Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000072002","descriptor_name":"Prion Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000072002","descriptor_name":"Prion Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000072002","descriptor_name":"Prion Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000072002","descriptor_name":"Prion Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000072002","descriptor_name":"Prion Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000072002","descriptor_name":"Prion Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066329","descriptor_name":"Protein Aggregates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066329","descriptor_name":"Protein Aggregates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066329","descriptor_name":"Protein Aggregates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-019-2601-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2601-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2601-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30642249","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30642249","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:ddd.uab.cat:223086","is_oa":true,"landing_page_url":"https://ddd.uab.cat/record/223086","pdf_url":"https://ddd.uab.cat/record/223086","source":{"id":"https://openalex.org/S4306400380","display_name":"Dip\u00f2sit Digital de Documents de la UAB (Universitat Aut\u00f2noma de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123044942","host_organization_name":"Universitat Aut\u00f2noma de Barcelona","host_organization_lineage":["https://openalex.org/I123044942"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:dnet:uabarcelona_::530601e54f26d24b4dea5f11dd9713e7","is_oa":true,"landing_page_url":"http://ddd.uab.cat/record/223086","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:fdecbeccd3f647a4a645034a900bc5f1","is_oa":true,"landing_page_url":"https://doaj.org/article/fdecbeccd3f647a4a645034a900bc5f1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-5 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5321727","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6332698","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6332698","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6332698","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-2601-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-2601-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2601-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4099999964237213,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G700784253","display_name":null,"funder_award_id":"BIO2016-783-78310-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G7238757520","display_name":null,"funder_award_id":"BIO2016-783-78310-R","funder_id":"https://openalex.org/F4320326262","funder_display_name":"Ministerio de Asuntos Econ\u00f3micos y Transformaci\u00f3n Digital, Gobierno de Espa\u00f1a"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320322121","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230"},{"id":"https://openalex.org/F4320326262","display_name":"Ministerio de Asuntos Econ\u00f3micos y Transformaci\u00f3n Digital, Gobierno de Espa\u00f1a","ror":"https://ror.org/03sv46s19"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2913720644.pdf","grobid_xml":"https://content.openalex.org/works/W2913720644.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1518685117","https://openalex.org/W1952608303","https://openalex.org/W1965286266","https://openalex.org/W1977034658","https://openalex.org/W2037417917","https://openalex.org/W2053098819","https://openalex.org/W2058746325","https://openalex.org/W2105148157","https://openalex.org/W2107775955","https://openalex.org/W2113281193","https://openalex.org/W2128048423","https://openalex.org/W2129602427","https://openalex.org/W2132121416","https://openalex.org/W2179684801","https://openalex.org/W2249662344","https://openalex.org/W2344042501","https://openalex.org/W2524059758","https://openalex.org/W2577163397","https://openalex.org/W2580158211","https://openalex.org/W2596515426","https://openalex.org/W2605586296","https://openalex.org/W2618696667","https://openalex.org/W2739999456","https://openalex.org/W2783363964","https://openalex.org/W3002895420","https://openalex.org/W3003530635","https://openalex.org/W3010296929","https://openalex.org/W3032465036","https://openalex.org/W3034722777"],"related_works":["https://openalex.org/W2169665392","https://openalex.org/W4252472976","https://openalex.org/W2007582574","https://openalex.org/W2084588066","https://openalex.org/W1977034658","https://openalex.org/W2019788207","https://openalex.org/W3160503995","https://openalex.org/W2088094466","https://openalex.org/W2024662074","https://openalex.org/W2062071602"],"abstract_inverted_index":{"BACKGROUND:":[0],"Around":[1],"1%":[2],"of":[3,46,62,91,116,119,125,139,153],"human":[4,140],"proteins":[5,97,156],"are":[6],"predicted":[7],"to":[8,174],"contain":[9],"a":[10,25,84,111],"disordered":[11],"and":[12,113,170],"low":[13],"complexity":[14],"prion-like":[15,96,126,141,155],"domain":[16],"(PrLD).":[17],"Mutations":[18],"in":[19,31,95,136,148,150],"PrLDs":[20,49],"have":[21,37],"been":[22],"shown":[23,38],"promote":[24],"transition":[26],"towards":[27],"an":[28,40],"aggregation-prone":[29],"state":[30],"several":[32],"diseases.":[33],"RESULTS:":[34],"Recently,":[35],"we":[36,75],"that":[39,42,87],"algorithm":[41,86],"considers":[43],"the":[44,60,80,89,117,122,137,149],"effects":[45],"mutations":[47,120],"on":[48,54,67,121],"composition,":[50],"as":[51,53],"well":[52],"localized":[55],"amyloid":[56],"propensity":[57,99],"can":[58,145],"predict":[59],"impact":[61],"these":[63],"amino":[64,92,133],"acid":[65,93,134],"changes":[66,94,135],"protein":[68],"intracellular":[69],"aggregation.":[70],"In":[71],"this":[72,77],"application":[73,147],"note,":[74],"implement":[76],"concept":[78],"into":[79],"AMYCO":[81,106,164],"web":[82,107],"server,":[83],"refined":[85],"forecasts":[88],"influence":[90],"aggregation":[98,123,159],"better":[100],"than":[101],"state-of-the-art":[102],"predictors.":[103],"CONCLUSIONS:":[104],"The":[105],"server":[108],"allows":[109],"for":[110,161],"fast":[112],"automated":[114],"evaluation":[115],"effect":[118],"properties":[124],"proteins.":[127,142],"This":[128],"might":[129],"uncover":[130],"novel":[131],"disease-linked":[132],"sequences":[138],"Additionally,":[143],"it":[144],"find":[146],"silico":[151],"design":[152],"synthetic":[154],"with":[157],"tuned":[158],"propensities":[160],"different":[162],"purposes.":[163],"does":[165],"not":[166],"require":[167],"previous":[168],"registration":[169],"is":[171],"freely":[172],"available":[173],"all":[175],"users":[176],"at:":[177],"http://bioinf.uab.cat/amyco/":[178],".":[179]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
