{"id":"https://openalex.org/W2883250809","doi":"https://doi.org/10.1186/s12859-018-2585-4","title":"Web-based design and analysis tools for CRISPR base editing","display_name":"Web-based design and analysis tools for CRISPR base editing","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2883250809","doi":"https://doi.org/10.1186/s12859-018-2585-4","mag":"2883250809","pmid":"https://pubmed.ncbi.nlm.nih.gov/30587106"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2585-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2585-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-018-2585-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-018-2585-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037463025","display_name":"Gue\u2010Ho Hwang","orcid":"https://orcid.org/0000-0002-4201-0974"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Gue-Ho Hwang","raw_affiliation_strings":["Department of Chemistry, Hanyang University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026647323","display_name":"Jeongbin Park","orcid":"https://orcid.org/0000-0002-9064-4912"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jeongbin Park","raw_affiliation_strings":["Center for Digital Health, Berlin Institute of Health and Charit\u00e9 Universit\u00e4tsmedizin Berlin, Berlin, Germany","Faculty of Biosciences, Heidelberg University, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Digital Health, Berlin Institute of Health and Charit\u00e9 Universit\u00e4tsmedizin Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I4210139777"]},{"raw_affiliation_string":"Faculty of Biosciences, Heidelberg University, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060146997","display_name":"Kayeong Lim","orcid":"https://orcid.org/0000-0002-6274-7252"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kayeong Lim","raw_affiliation_strings":["Center for Genome Engineering, Institute for Basic Science, Seoul, South Korea","Department of Chemistry, Seoul National University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genome Engineering, Institute for Basic Science, Seoul, South Korea","institution_ids":["https://openalex.org/I4210104335"]},{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100426037","display_name":"Sung\u2010Hyun Kim","orcid":"https://orcid.org/0009-0005-6052-2577"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sunghyun Kim","raw_affiliation_strings":["Center for Genome Engineering, Institute for Basic Science, Daejeon, South Korea","Department of Chemistry, Seoul National University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genome Engineering, Institute for Basic Science, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210104335"]},{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025853206","display_name":"Jihyeon Yu","orcid":"https://orcid.org/0000-0003-0247-7753"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jihyeon Yu","raw_affiliation_strings":["Department of Chemistry, Hanyang University, Seoul, South Korea","Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]},{"raw_affiliation_string":"Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048697830","display_name":"Eunchong Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Eunchong Yu","raw_affiliation_strings":["Department of Chemistry, Hanyang University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058382490","display_name":"Sang\u2010Tae Kim","orcid":"https://orcid.org/0000-0003-1645-6021"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sang-Tae Kim","raw_affiliation_strings":["Center for Genome Engineering, Institute for Basic Science, Daejeon, South Korea","Department of Chemistry, Seoul National University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genome Engineering, Institute for Basic Science, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210104335"]},{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044191947","display_name":"Roland Eils","orcid":"https://orcid.org/0000-0002-0034-4036"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]},{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roland Eils","raw_affiliation_strings":["Center for Digital Health, Berlin Institute of Health and Charit\u00e9 Universit\u00e4tsmedizin Berlin, Berlin, Germany","Health Data Science Unit, Heidelberg University Hospital, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Digital Health, Berlin Institute of Health and Charit\u00e9 Universit\u00e4tsmedizin Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I4210139777"]},{"raw_affiliation_string":"Health Data Science Unit, Heidelberg University Hospital, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100390285","display_name":"Jin\u2010Soo Kim","orcid":"https://orcid.org/0000-0003-4847-1306"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jin-Soo Kim","raw_affiliation_strings":["Center for Genome Engineering, Institute for Basic Science, Seoul, South Korea","Department of Chemistry, Seoul National University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genome Engineering, Institute for Basic Science, Seoul, South Korea","institution_ids":["https://openalex.org/I4210104335"]},{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058387827","display_name":"Sangsu Bae","orcid":"https://orcid.org/0000-0003-3615-8566"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Sangsu Bae","raw_affiliation_strings":["Department of Chemistry, Hanyang University, Seoul, South Korea. sangsubae@hanyang.ac.kr","Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea. sangsubae@hanyang.ac.kr","Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea"],"raw_orcid":"https://orcid.org/0000-0003-3615-8566","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Hanyang University, Seoul, South Korea. sangsubae@hanyang.ac.kr","institution_ids":["https://openalex.org/I4575257"]},{"raw_affiliation_string":"Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea. sangsubae@hanyang.ac.kr","institution_ids":["https://openalex.org/I4575257"]},{"raw_affiliation_string":"Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5058387827"],"corresponding_institution_ids":["https://openalex.org/I4575257"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":7.0371,"has_fulltext":true,"cited_by_count":204,"citation_normalized_percentile":{"value":0.97943585,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"542","last_page":"542"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14293","display_name":"Biotechnology and Related Fields","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.7590470314025879},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7262405753135681},{"id":"https://openalex.org/keywords/genome-editing","display_name":"Genome editing","score":0.5207988023757935},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4539180099964142},{"id":"https://openalex.org/keywords/base","display_name":"Base (topology)","score":0.43816250562667847},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4291403591632843},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.42887917160987854},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34517014026641846},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3398853838443756},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27648234367370605},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.24270182847976685},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.22858926653862},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1527400016784668},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12975460290908813},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11996528506278992}],"concepts":[{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.7590470314025879},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7262405753135681},{"id":"https://openalex.org/C144501496","wikidata":"https://www.wikidata.org/wiki/Q5533489","display_name":"Genome editing","level":4,"score":0.5207988023757935},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4539180099964142},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.43816250562667847},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4291403591632843},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.42887917160987854},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34517014026641846},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3398853838443756},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27648234367370605},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.24270182847976685},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.22858926653862},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1527400016784668},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12975460290908813},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11996528506278992},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-018-2585-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2585-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-018-2585-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30587106","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30587106","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:archiv.ub.uni-heidelberg.de:25800","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402333","display_name":"heiDOK (Heidelberg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I223822909","host_organization_name":"Heidelberg University","host_organization_lineage":["https://openalex.org/I223822909"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:6f3d4be073304c12bc5c677fb04bf7f0","is_oa":true,"landing_page_url":"https://doaj.org/article/6f3d4be073304c12bc5c677fb04bf7f0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-7 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5289448","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6307267","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:s-space.snu.ac.kr:10371/147077","is_oa":false,"landing_page_url":"https://hdl.handle.net/10371/147077","pdf_url":null,"source":{"id":"https://openalex.org/S4306401345","display_name":"Seoul National University Open Repository (Seoul National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139264467","host_organization_name":"Seoul National University","host_organization_lineage":["https://openalex.org/I139264467"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2585-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2585-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-018-2585-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2093489216","display_name":null,"funder_award_id":"PJ01319301","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G2147243150","display_name":null,"funder_award_id":"2017M3A9G8084539","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G2486052060","display_name":null,"funder_award_id":"20000158","funder_id":"https://openalex.org/F4320321681","funder_display_name":"Ministry of Trade, Industry and Energy"},{"id":"https://openalex.org/G2972625734","display_name":null,"funder_award_id":"2018M3A9H3022412","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G4222886549","display_name":null,"funder_award_id":"20000158","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G4360875691","display_name":null,"funder_award_id":"2018M3A9H3022412","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G4651768879","display_name":null,"funder_award_id":"HI16C1012","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G6957614229","display_name":null,"funder_award_id":"2017M3A9G8084539","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320310693","display_name":"Deutsches Krebsforschungszentrum","ror":"https://ror.org/04cdgtt98"},{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320321681","display_name":"Ministry of Trade, Industry and Energy","ror":"https://ror.org/008nkqk13"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2883250809.pdf","grobid_xml":"https://content.openalex.org/works/W2883250809.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1608084731","https://openalex.org/W1922040927","https://openalex.org/W2039705224","https://openalex.org/W2045435533","https://openalex.org/W2050480410","https://openalex.org/W2064815984","https://openalex.org/W2076951953","https://openalex.org/W2077659966","https://openalex.org/W2105464583","https://openalex.org/W2107959600","https://openalex.org/W2114245320","https://openalex.org/W2115603949","https://openalex.org/W2120932131","https://openalex.org/W2122563582","https://openalex.org/W2150547367","https://openalex.org/W2167380395","https://openalex.org/W2221514390","https://openalex.org/W2336828812","https://openalex.org/W2479120789","https://openalex.org/W2480829753","https://openalex.org/W2509775353","https://openalex.org/W2590764628","https://openalex.org/W2594473698","https://openalex.org/W2594683972","https://openalex.org/W2621848900","https://openalex.org/W2622049469","https://openalex.org/W2623277795","https://openalex.org/W2737309984","https://openalex.org/W2752453466","https://openalex.org/W2758269208","https://openalex.org/W2766599608","https://openalex.org/W2793309516","https://openalex.org/W2889513238","https://openalex.org/W4245053291"],"related_works":["https://openalex.org/W4366822718","https://openalex.org/W3030388918","https://openalex.org/W4200005163","https://openalex.org/W2807464733","https://openalex.org/W4220766053","https://openalex.org/W2603161682","https://openalex.org/W4213248511","https://openalex.org/W3165203721","https://openalex.org/W4388296936","https://openalex.org/W2960163646"],"abstract_inverted_index":{"BACKGROUND:":[0],"As":[1],"a":[2,18,38,41,110,123,141,169],"result":[3],"of":[4,28,68,80,154],"its":[5],"simplicity":[6],"and":[7,99,143,175,180,188,204],"high":[8],"efficiency,":[9],"the":[10,66,78,148],"CRISPR-Cas":[11],"system":[12],"has":[13],"been":[14,45,86],"widely":[15],"used":[16],"as":[17],"genome":[19],"editing":[20,48,128],"tool.":[21],"Recently,":[22],"CRISPR":[23,214],"base":[24,95,105,127,215],"editors,":[25,96],"which":[26],"consist":[27],"deactivated":[29],"Cas9":[30,33],"(dCas9)":[31],"or":[32,40],"nickase":[34],"(nCas9)":[35],"linked":[36],"with":[37,115],"cytidine":[39],"guanine":[42],"deaminase,":[43],"have":[44,83],"developed.":[46,87],"Base":[47],"tools":[49,75,82,93,198],"will":[50],"be":[51,166,183],"very":[52],"useful":[53,116,196],"for":[54,94,125,213],"gene":[55],"correction":[56],"because":[57,147],"they":[58],"can":[59,182],"produce":[60],"highly":[61],"specific":[62],"DNA":[63,113],"substitutions":[64],"without":[65],"introduction":[67],"any":[69],"donor":[70],"DNA,":[71],"but":[72],"dedicated":[73],"web-based":[74],"to":[76,165,168,199,205],"facilitate":[77],"use":[79],"such":[81],"not":[84,163],"yet":[85],"RESULTS:":[88],"We":[89,193],"present":[90],"two":[91,195],"web":[92,197],"named":[97],"BE-Designer":[98,101,179],"BE-Analyzer.":[100],"provides":[102,136],"all":[103],"possible":[104],"editor":[106],"target":[107,201],"sequences":[108],"in":[109,140],"given":[111],"input":[112],"sequence":[114,202],"information":[117,137],"including":[118],"potential":[119],"off-target":[120],"sites.":[121],"BE-Analyzer,":[122],"tool":[124,149],"assessing":[126],"outcomes":[129],"from":[130,209],"next":[131],"generation":[132],"sequencing":[133,157],"(NGS)":[134],"data,":[135],"about":[138],"mutations":[139],"table":[142],"interactive":[144],"graphs.":[145],"Furthermore,":[146],"runs":[150],"client-side,":[151],"large":[152],"amounts":[153],"targeted":[155],"deep":[156],"data":[158,177,208],"(<":[159],"1":[160],"GB)":[161],"do":[162],"need":[164],"uploaded":[167],"server,":[170],"substantially":[171],"reducing":[172],"running":[173],"time":[174],"increasing":[176],"security.":[178],"BE-Analyzer":[181],"freely":[184],"accessed":[185],"at":[186],"http://www.rgenome.net/be-designer/":[187],"http://www.rgenome.net/be-analyzer":[189],"/,":[190],"respectively.":[191],"CONCLUSION:":[192],"develop":[194],"design":[200],"(BE-Designer)":[203],"analyze":[206],"NGS":[207],"experimental":[210],"results":[211],"(BE-Analyzer)":[212],"editors.":[216]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":34},{"year":2024,"cited_by_count":32},{"year":2023,"cited_by_count":24},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":30},{"year":2020,"cited_by_count":35},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
