{"id":"https://openalex.org/W2905614462","doi":"https://doi.org/10.1186/s12859-018-2555-x","title":"Protein complexes identification based on go attributed network embedding","display_name":"Protein complexes identification based on go attributed network embedding","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2905614462","doi":"https://doi.org/10.1186/s12859-018-2555-x","mag":"2905614462","pmid":"https://pubmed.ncbi.nlm.nih.gov/30572820"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2555-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2555-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2555-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2555-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022604762","display_name":"Bo Xu","orcid":"https://orcid.org/0000-0003-4135-0683"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]},{"id":"https://openalex.org/I4210102840","display_name":"Ubiquitous Energy (United States)","ror":"https://ror.org/01b06j989","country_code":"US","type":"company","lineage":["https://openalex.org/I4210102840"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Bo Xu","raw_affiliation_strings":["Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Dalian, 116000, China. boxu@dlut.edu.cn","School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China. boxu@dlut.edu.cn","School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Dalian, 116000, China. boxu@dlut.edu.cn","institution_ids":["https://openalex.org/I4210102840"]},{"raw_affiliation_string":"School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China. boxu@dlut.edu.cn","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]},{"raw_affiliation_string":"School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100377568","display_name":"Kun Li","orcid":"https://orcid.org/0000-0002-8788-1036"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Li","raw_affiliation_strings":["School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China"],"affiliations":[{"raw_affiliation_string":"School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101513399","display_name":"Wei Zheng","orcid":"https://orcid.org/0000-0001-8921-5304"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I7350606","display_name":"Dalian Jiaotong University","ror":"https://ror.org/05gp45n31","country_code":"CN","type":"education","lineage":["https://openalex.org/I7350606"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Zheng","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, No.2 Linggong Road, Ganjingzi District, Dalian, 116024, China","College of software, Dalian JiaoTong University, Dalian, 116000, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, No.2 Linggong Road, Ganjingzi District, Dalian, 116024, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of software, Dalian JiaoTong University, Dalian, 116000, China","institution_ids":["https://openalex.org/I7350606"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100705977","display_name":"Xiaoxia Liu","orcid":"https://orcid.org/0009-0003-6662-9020"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoxia Liu","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, No.2 Linggong Road, Ganjingzi District, Dalian, 116024, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, No.2 Linggong Road, Ganjingzi District, Dalian, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046020427","display_name":"Yijia Zhang","orcid":"https://orcid.org/0000-0002-5843-4675"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijia Zhang","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, No.2 Linggong Road, Ganjingzi District, Dalian, 116024, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, No.2 Linggong Road, Ganjingzi District, Dalian, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042620633","display_name":"Zhehuan Zhao","orcid":"https://orcid.org/0000-0002-5001-1352"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhehuan Zhao","raw_affiliation_strings":["Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Dalian, 116000, China","School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Dalian, 116000, China","institution_ids":[]},{"raw_affiliation_string":"School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009588567","display_name":"Zengyou He","orcid":"https://orcid.org/0000-0001-9526-8816"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zengyou He","raw_affiliation_strings":["Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Dalian, 116000, China","School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Dalian, 116000, China","institution_ids":[]},{"raw_affiliation_string":"School of Software Technology, Dalian University of Technology, No.321 Tuqiang Road, Economic Development Zone, Dalian, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5022604762"],"corresponding_institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944","https://openalex.org/I4210102840"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.117,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.78287966,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"19","issue":"1","first_page":"535","last_page":"535"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/adjacency-matrix","display_name":"Adjacency matrix","score":0.6727985739707947},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6182853579521179},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5864890813827515},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5841270685195923},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5385362505912781},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5267552733421326},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5216991305351257},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.47579964995384216},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45345115661621094},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.443962961435318},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4153997004032135},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.41220661997795105},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3630479574203491},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3562406301498413},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2777091860771179},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19663238525390625},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.175374835729599},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1164688766002655}],"concepts":[{"id":"https://openalex.org/C180356752","wikidata":"https://www.wikidata.org/wiki/Q727035","display_name":"Adjacency matrix","level":3,"score":0.6727985739707947},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6182853579521179},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5864890813827515},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5841270685195923},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5385362505912781},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5267552733421326},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5216991305351257},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.47579964995384216},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45345115661621094},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.443962961435318},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4153997004032135},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.41220661997795105},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3630479574203491},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3562406301498413},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2777091860771179},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19663238525390625},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.175374835729599},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1164688766002655},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-018-2555-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2555-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2555-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30572820","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30572820","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:d82898cd4daf48bab89bf87f7a7b5d8e","is_oa":true,"landing_page_url":"https://doaj.org/article/d82898cd4daf48bab89bf87f7a7b5d8e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5287093","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6302388","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6302388","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6302388","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2555-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2555-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2555-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1991553064","display_name":null,"funder_award_id":"61502071","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2611603324","display_name":null,"funder_award_id":"No.61572094","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2877651633","display_name":null,"funder_award_id":"No.61502071","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G306606422","display_name":null,"funder_award_id":"61572094","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3817569720","display_name":null,"funder_award_id":"DUT18RC","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G579174157","display_name":null,"funder_award_id":"DUT18RC(3)004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7110810602","display_name":null,"funder_award_id":"61572094","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7704078950","display_name":null,"funder_award_id":"No. DUT18RC(3)004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8208342437","display_name":null,"funder_award_id":"1 and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2905614462.pdf","grobid_xml":"https://content.openalex.org/works/W2905614462.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W74439177","https://openalex.org/W1635771532","https://openalex.org/W1777916189","https://openalex.org/W1888005072","https://openalex.org/W1973247012","https://openalex.org/W1973508741","https://openalex.org/W1979899431","https://openalex.org/W1986214964","https://openalex.org/W1987363726","https://openalex.org/W2007448777","https://openalex.org/W2050721857","https://openalex.org/W2067163733","https://openalex.org/W2082565035","https://openalex.org/W2091254101","https://openalex.org/W2103460693","https://openalex.org/W2110708857","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2125179362","https://openalex.org/W2132582966","https://openalex.org/W2132993044","https://openalex.org/W2135098204","https://openalex.org/W2136850043","https://openalex.org/W2138003801","https://openalex.org/W2140280811","https://openalex.org/W2140412523","https://openalex.org/W2143862148","https://openalex.org/W2160429376","https://openalex.org/W2160449408","https://openalex.org/W2163485494","https://openalex.org/W2164278908","https://openalex.org/W2165533101","https://openalex.org/W2166344835","https://openalex.org/W2166574880","https://openalex.org/W2242161203","https://openalex.org/W2254563062","https://openalex.org/W2403079677","https://openalex.org/W2579372251","https://openalex.org/W2616561032","https://openalex.org/W2622489478","https://openalex.org/W2914761779","https://openalex.org/W2914874661","https://openalex.org/W2962756421","https://openalex.org/W3098674174","https://openalex.org/W3103253084","https://openalex.org/W3104097132","https://openalex.org/W3105705953","https://openalex.org/W4231824804"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2188500270","https://openalex.org/W2303858293","https://openalex.org/W2183306018","https://openalex.org/W2549990292","https://openalex.org/W2049983311","https://openalex.org/W2219512485","https://openalex.org/W4293665714","https://openalex.org/W1977633309","https://openalex.org/W2098964748"],"abstract_inverted_index":{"GANE":[0],"provides":[1],"a":[2],"framework":[3],"that":[4],"integrate":[5],"many":[6],"valuable":[7],"and":[8,40],"different":[9],"biological":[10],"information":[11],"into":[12],"the":[13],"task":[14],"of":[15],"protein":[16,20],"complex":[17],"identification.":[18],"The":[19],"vector":[21],"representation":[22],"learned":[23],"from":[24],"our":[25],"attributed":[26],"PPI":[27,38],"network":[28],"can":[29],"also":[30],"be":[31],"used":[32],"in":[33],"other":[34],"tasks,":[35],"such":[36],"as":[37],"prediction":[39],"disease":[41],"gene":[42],"prediction.":[43]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}