{"id":"https://openalex.org/W2904558870","doi":"https://doi.org/10.1186/s12859-018-2546-y","title":"Measures of co-expression for improved function prediction of long non-coding RNAs","display_name":"Measures of co-expression for improved function prediction of long non-coding RNAs","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2904558870","doi":"https://doi.org/10.1186/s12859-018-2546-y","mag":"2904558870","pmid":"https://pubmed.ncbi.nlm.nih.gov/30567492"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2546-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2546-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2546-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2546-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021700777","display_name":"Rezvan Ehsani","orcid":"https://orcid.org/0000-0002-8236-7628"},"institutions":[{"id":"https://openalex.org/I112450260","display_name":"Zabol University","ror":"https://ror.org/03d9mz263","country_code":"IR","type":"education","lineage":["https://openalex.org/I112450260"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Rezvan Ehsani","raw_affiliation_strings":["Department of Bioinformatics, University of Zabol, Zabol, Iran. rezvanehsani74@gmail.com","Department of Mathematics, University of Zabol, Zabol, Iran. rezvanehsani74@gmail.com","Department of Mathematics, University of Zabol, Zabol, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, University of Zabol, Zabol, Iran. rezvanehsani74@gmail.com","institution_ids":["https://openalex.org/I112450260"]},{"raw_affiliation_string":"Department of Mathematics, University of Zabol, Zabol, Iran. rezvanehsani74@gmail.com","institution_ids":["https://openalex.org/I112450260"]},{"raw_affiliation_string":"Department of Mathematics, University of Zabol, Zabol, Iran","institution_ids":["https://openalex.org/I112450260"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015108785","display_name":"Finn Drabl\u00f8s","orcid":"https://orcid.org/0000-0001-5794-828X"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Finn Drabl\u00f8s","raw_affiliation_strings":["Department of Clinical and Molecular Medicine, NTNU - Norwegian University of Science and Technology, NO-7491, Trondheim, Norway. finn.drablos@ntnu.no","Department of Clinical and Molecular Medicine, NTNU - Norwegian University of Science and Technology, NO-7491, Trondheim, Norway"],"raw_orcid":"https://orcid.org/0000-0001-5794-828X","affiliations":[{"raw_affiliation_string":"Department of Clinical and Molecular Medicine, NTNU - Norwegian University of Science and Technology, NO-7491, Trondheim, Norway. finn.drablos@ntnu.no","institution_ids":["https://openalex.org/I204778367"]},{"raw_affiliation_string":"Department of Clinical and Molecular Medicine, NTNU - Norwegian University of Science and Technology, NO-7491, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5015108785","https://openalex.org/A5021700777"],"corresponding_institution_ids":["https://openalex.org/I112450260","https://openalex.org/I204778367"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.8004,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.67927158,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"19","issue":"1","first_page":"533","last_page":"533"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.0034000000450760126,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.694731593132019},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.5747894048690796},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5546949505805969},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5355913639068604},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5163685083389282},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5022993087768555},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4710794985294342},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.45036718249320984},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4451417922973633},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4254872798919678},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3971579670906067},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2699151337146759},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.26725611090660095},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24245604872703552},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14941692352294922},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1470048427581787}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.694731593132019},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.5747894048690796},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5546949505805969},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5355913639068604},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5163685083389282},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5022993087768555},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4710794985294342},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.45036718249320984},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4451417922973633},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4254872798919678},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3971579670906067},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2699151337146759},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.26725611090660095},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24245604872703552},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14941692352294922},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1470048427581787},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-018-2546-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2546-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2546-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30567492","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30567492","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:brage.bibsys.no:11250/2579221","is_oa":true,"landing_page_url":"http://hdl.handle.net/11250/2579221","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"533-?","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:c96f54cf3f5647acaec371ff67daa259","is_oa":true,"landing_page_url":"https://doaj.org/article/c96f54cf3f5647acaec371ff67daa259","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-12 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5271576","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6300029","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6300029","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6300029","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2546-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2546-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2546-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311040","display_name":"Norges Teknisk-Naturvitenskapelige Universitet","ror":"https://ror.org/05xg72x27"},{"id":"https://openalex.org/F4320329674","display_name":"University of Zabol","ror":"https://ror.org/03d9mz263"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2904558870.pdf","grobid_xml":"https://content.openalex.org/works/W2904558870.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W964275744","https://openalex.org/W1494732973","https://openalex.org/W1759437670","https://openalex.org/W1975064579","https://openalex.org/W1977093862","https://openalex.org/W1979768717","https://openalex.org/W1992212213","https://openalex.org/W1996207018","https://openalex.org/W1999722941","https://openalex.org/W1999746344","https://openalex.org/W2010692211","https://openalex.org/W2017844161","https://openalex.org/W2034784092","https://openalex.org/W2037363723","https://openalex.org/W2040746023","https://openalex.org/W2083325294","https://openalex.org/W2087377443","https://openalex.org/W2096465161","https://openalex.org/W2100761975","https://openalex.org/W2103017472","https://openalex.org/W2117790705","https://openalex.org/W2118260473","https://openalex.org/W2120731490","https://openalex.org/W2128983843","https://openalex.org/W2129375421","https://openalex.org/W2135695964","https://openalex.org/W2138370010","https://openalex.org/W2140628770","https://openalex.org/W2140729960","https://openalex.org/W2141458291","https://openalex.org/W2142019735","https://openalex.org/W2150098952","https://openalex.org/W2150926065","https://openalex.org/W2153525556","https://openalex.org/W2160567079","https://openalex.org/W2160947271","https://openalex.org/W2180674495","https://openalex.org/W2259090596","https://openalex.org/W2296343843","https://openalex.org/W2479117119","https://openalex.org/W2512588567","https://openalex.org/W2515810558","https://openalex.org/W2537453540","https://openalex.org/W2582743722","https://openalex.org/W2601961147","https://openalex.org/W2604820680","https://openalex.org/W2760015231","https://openalex.org/W2777095407","https://openalex.org/W2783468010","https://openalex.org/W2799820278","https://openalex.org/W2810580188","https://openalex.org/W2885306346","https://openalex.org/W2952603222","https://openalex.org/W2963057791","https://openalex.org/W3024216082"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2341842940","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2059640416","https://openalex.org/W2329895846"],"abstract_inverted_index":{"BACKGROUND:":[0],"Almost":[1],"16,000":[2],"human":[3,104],"long":[4],"non-coding":[5],"RNA":[6],"(lncRNA)":[7],"genes":[8,34,47,175],"have":[9,73,107],"been":[10],"identified":[11],"in":[12,44,143,145],"the":[13,17,52,60,67,94,148,171],"GENCODE":[14],"project.":[15],"However,":[16,54],"function":[18,28,172],"of":[19,21,29,69,93,133,173,180],"most":[20],"them":[22],"remains":[23],"to":[24,59,65,117,125,169],"be":[25,36],"discovered.":[26],"The":[27,183],"lncRNAs":[30,163],"and":[31,75,82,84,89],"other":[32],"novel":[33],"can":[35],"predicted":[37],"by":[38],"identifying":[39],"significantly":[40],"enriched":[41],"annotation":[42,127,153],"terms":[43,154],"already":[45],"annotated":[46],"that":[48,62,140,165],"are":[49,57,63,123],"co-expressed":[50,95],"with":[51,147],"lncRNAs.":[53],"such":[55],"approaches":[56],"sensitive":[58],"methods":[61,122],"used":[64,109,185],"estimate":[66],"level":[68],"co-expression.":[70],"RESULTS:":[71],"We":[72,106],"tested":[74],"compared":[76],"two":[77,85],"well-known":[78],"statistical":[79,149],"metrics":[80,87],"(Pearson":[81],"Spearman)":[83],"geometrical":[86,141],"(Sobolev":[88],"Fisher)":[90],"for":[91,186],"identification":[92],"genes,":[96],"using":[97,129],"experimental":[98],"expression":[99,181],"data":[100],"across":[101],"19":[102],"normal":[103],"tissues.":[105],"also":[108],"a":[110,130,177],"benchmarking":[111],"approach":[112],"based":[113],"on":[114,161],"semantic":[115],"similarity":[116],"evaluate":[118],"how":[119],"well":[120],"these":[121,174],"able":[124],"predict":[126,152,170],"terms,":[128],"well-annotated":[131],"set":[132,179],"protein-coding":[134],"genes.":[135],"CONCLUSION:":[136],"This":[137],"work":[138],"shows":[139],"metrics,":[142,150],"particular":[144],"combination":[146],"will":[151],"more":[155],"efficiently":[156],"than":[157],"traditional":[158],"approaches.":[159],"Tests":[160],"selected":[162],"confirm":[164],"it":[166],"is":[167,189],"possible":[168],"given":[176],"reliable":[178],"data.":[182],"software":[184],"this":[187],"investigation":[188],"freely":[190],"available.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
