{"id":"https://openalex.org/W2905614212","doi":"https://doi.org/10.1186/s12859-018-2537-z","title":"Nonlinear expression and visualization of nonmetric relationships in genetic diseases and microbiome data","display_name":"Nonlinear expression and visualization of nonmetric relationships in genetic diseases and microbiome data","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2905614212","doi":"https://doi.org/10.1186/s12859-018-2537-z","mag":"2905614212","pmid":"https://pubmed.ncbi.nlm.nih.gov/30577738"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2537-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2537-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-018-2537-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-018-2537-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061478689","display_name":"Xianchao Zhu","orcid":"https://orcid.org/0000-0002-7148-7923"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianchao Zhu","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101496385","display_name":"Xianjun Shen","orcid":"https://orcid.org/0000-0001-5714-8848"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianjun Shen","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, China. xjshen@mail.ccnu.edu.cn","School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China. xjshen@mail.ccnu.edu.cn","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003550654","display_name":"Xingpeng Jiang","orcid":"https://orcid.org/0000-0002-8848-9300"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingpeng Jiang","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030709309","display_name":"Kaiping Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaiping Wei","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102010131","display_name":"Tingting He","orcid":"https://orcid.org/0000-0001-7523-6550"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingting He","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061864295","display_name":"Yuanyuan Ma","orcid":"https://orcid.org/0000-0001-9103-5513"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanyuan Ma","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100390362","display_name":"Jiaqi Liu","orcid":"https://orcid.org/0000-0002-3316-4744"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaqi Liu","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101569679","display_name":"Xiaohua Hu","orcid":"https://orcid.org/0000-0002-4777-3022"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]},{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Xiaohua Hu","raw_affiliation_strings":["College of Computing and Informatics, Drexel University, Philadelphia, PA, 19104, USA","School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computing and Informatics, Drexel University, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I72816309"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5766,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.65432972,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"19","issue":"S20","first_page":"505","last_page":"505"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.3095000088214874,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.3095000088214874,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.09870000183582306,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.09120000153779984,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6392406821250916},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.633934736251831},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5674203038215637},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5318934917449951},{"id":"https://openalex.org/keywords/data-point","display_name":"Data point","score":0.5079534649848938},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4736674427986145},{"id":"https://openalex.org/keywords/nonlinear-dimensionality-reduction","display_name":"Nonlinear dimensionality reduction","score":0.47106167674064636},{"id":"https://openalex.org/keywords/multidimensional-scaling","display_name":"Multidimensional scaling","score":0.45460718870162964},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.4532800614833832},{"id":"https://openalex.org/keywords/metric-space","display_name":"Metric space","score":0.44140541553497314},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.43315446376800537},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3977620601654053},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38931387662887573},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3874712288379669},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.3064078688621521},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3054550886154175},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20909377932548523},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.1261613368988037}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6392406821250916},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.633934736251831},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5674203038215637},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5318934917449951},{"id":"https://openalex.org/C21080849","wikidata":"https://www.wikidata.org/wiki/Q13611879","display_name":"Data point","level":2,"score":0.5079534649848938},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4736674427986145},{"id":"https://openalex.org/C151876577","wikidata":"https://www.wikidata.org/wiki/Q7049464","display_name":"Nonlinear dimensionality reduction","level":3,"score":0.47106167674064636},{"id":"https://openalex.org/C91682802","wikidata":"https://www.wikidata.org/wiki/Q620538","display_name":"Multidimensional scaling","level":2,"score":0.45460718870162964},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.4532800614833832},{"id":"https://openalex.org/C198043062","wikidata":"https://www.wikidata.org/wiki/Q180953","display_name":"Metric space","level":2,"score":0.44140541553497314},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.43315446376800537},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3977620601654053},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38931387662887573},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3874712288379669},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.3064078688621521},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3054550886154175},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20909377932548523},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.1261613368988037},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017711","descriptor_name":"Nonlinear Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017711","descriptor_name":"Nonlinear Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017711","descriptor_name":"Nonlinear Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030342","descriptor_name":"Genetic Diseases, Inborn","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030342","descriptor_name":"Genetic Diseases, Inborn","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030342","descriptor_name":"Genetic Diseases, Inborn","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-018-2537-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2537-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-018-2537-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30577738","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30577738","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:14c0e46d88b94926b06f6df2b7f42430","is_oa":true,"landing_page_url":"https://doaj.org/article/14c0e46d88b94926b06f6df2b7f42430","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss S20, Pp 37-48 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5287075","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6302369","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6302369","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6302369","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2537-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2537-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-018-2537-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities"}],"awards":[{"id":"https://openalex.org/G4060796902","display_name":null,"funder_award_id":"2017YFC0909502","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8543904368","display_name":null,"funder_award_id":"61532008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2905614212.pdf","grobid_xml":"https://content.openalex.org/works/W2905614212.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W70116980","https://openalex.org/W1557571920","https://openalex.org/W1965881002","https://openalex.org/W1980287119","https://openalex.org/W1984479357","https://openalex.org/W1989684700","https://openalex.org/W2000967257","https://openalex.org/W2006465310","https://openalex.org/W2014455239","https://openalex.org/W2020301095","https://openalex.org/W2021597686","https://openalex.org/W2032230795","https://openalex.org/W2034838676","https://openalex.org/W2040385059","https://openalex.org/W2071841602","https://openalex.org/W2085438764","https://openalex.org/W2086782664","https://openalex.org/W2086796339","https://openalex.org/W2097521365","https://openalex.org/W2098318489","https://openalex.org/W2103432148","https://openalex.org/W2104261859","https://openalex.org/W2105813018","https://openalex.org/W2108563286","https://openalex.org/W2110598196","https://openalex.org/W2116063398","https://openalex.org/W2116718098","https://openalex.org/W2119412782","https://openalex.org/W2122683976","https://openalex.org/W2124541940","https://openalex.org/W2128428892","https://openalex.org/W2136279704","https://openalex.org/W2140239055","https://openalex.org/W2149489931","https://openalex.org/W2151249778","https://openalex.org/W2154654747","https://openalex.org/W2157444450","https://openalex.org/W2159413587","https://openalex.org/W2168301815","https://openalex.org/W2168394145","https://openalex.org/W2187089797","https://openalex.org/W2252143850","https://openalex.org/W2771238672","https://openalex.org/W4235457527","https://openalex.org/W4240861547","https://openalex.org/W6658390920"],"related_works":["https://openalex.org/W2375574759","https://openalex.org/W2383239174","https://openalex.org/W3088634662","https://openalex.org/W117517268","https://openalex.org/W3162910294","https://openalex.org/W2539700568","https://openalex.org/W1996633793","https://openalex.org/W2931531042","https://openalex.org/W1489327846","https://openalex.org/W2364156185"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,83,225],"traditional":[2],"methods":[3,119,123],"of":[4,19,49,65,85,97,103,127,239],"visualizing":[5],"high-dimensional":[6,81],"data":[7,77,86,105],"objects":[8],"in":[9,25,52,79,180],"low-dimensional":[10,53],"metric":[11,20,68],"spaces":[12],"are":[13,111],"subject":[14],"to":[15,30,46,55,61,124,135,147,162],"the":[16,47,57,63,73,94,98,101,108,142,164,177,181,190,196,230,247],"basic":[17],"limitations":[18,23,64],"space.":[21,82],"These":[22],"result":[24],"multidimensional":[26],"scaling":[27],"that":[28,141,229],"fails":[29,146],"faithfully":[31],"represent":[32],"non-metric":[33,58],"similarity":[34,60,219],"data.":[35,223],"RESULTS:":[36],"Multiple":[37],"maps":[38],"t-SNE":[39],"(mm-tSNE)":[40],"has":[41],"drawn":[42],"much":[43],"attention":[44],"due":[45],"construction":[48],"multiple":[50],"mappings":[51],"space":[54],"visualize":[56],"pairwise":[59],"eliminate":[62],"a":[66,80,149,158,205],"single":[67],"map.":[69],"mm-tSNE":[70,240],"regularization":[71,95],"combines":[72],"intrinsic":[74],"geometry":[75],"between":[76],"points":[78,87,106],"weight":[84],"on":[88,107,211,242],"each":[89,130,170],"map":[90,110],"is":[91],"used":[92],"as":[93,113,115],"parameter":[96],"manifold,":[99],"so":[100,140],"weights":[102],"similar":[104],"same":[109],"also":[112],"close":[114],"possible.":[116],"However,":[117],"these":[118],"use":[120,157],"standard":[121],"momentum":[122,160],"calculate":[125],"parameters":[126],"gradient":[128,137,171,179],"at":[129,176],"iteration,":[131],"which":[132],"may":[133],"lead":[134],"erroneous":[136],"search":[138,183],"directions":[139],"target":[143,165],"loss":[144,166],"function":[145,167],"achieve":[148],"better":[150,234],"local":[151],"minimum.":[152],"In":[153],"this":[154],"article,":[155],"we":[156,208],"Nesterov":[159],"method":[161,232],"learn":[163],"and":[168,221,254],"correct":[169],"update":[172],"by":[173],"looking":[174],"back":[175],"previous":[178],"candidate":[182],"direction.":[184],"By":[185],"using":[186],"indirect":[187],"second-order":[188],"information,":[189],"algorithm":[191],"obtains":[192],"faster":[193],"convergence":[194],"than":[195,236],"original":[197],"algorithm.":[198],"To":[199],"further":[200],"evaluate":[201],"our":[202],"approach":[203],"from":[204],"comparative":[206],"perspective,":[207],"conducted":[209],"experiments":[210],"several":[212,237],"datasets":[213],"including":[214,246],"social":[215],"network":[216],"data,":[217,220],"phenotype":[218],"microbiomic":[222],"CONCLUSIONS:":[224],"experimental":[226],"results":[227,235],"show":[228],"proposed":[231],"achieves":[233],"versions":[238],"based":[241],"three":[243],"evaluation":[244],"indicators":[245],"neighborhood":[248],"preservation":[249],"ratio":[250],"(NPR),":[251],"error":[252],"rate":[253],"time":[255],"complexity.":[256]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
