{"id":"https://openalex.org/W2952528394","doi":"https://doi.org/10.1186/s12859-018-2531-5","title":"miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase","display_name":"miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2952528394","doi":"https://doi.org/10.1186/s12859-018-2531-5","mag":"2952528394","pmid":"https://pubmed.ncbi.nlm.nih.gov/30598108"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2531-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2531-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2531-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2531-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071137947","display_name":"Taosheng Xu","orcid":"https://orcid.org/0000-0001-8283-7274"},"institutions":[{"id":"https://openalex.org/I2802624667","display_name":"Hefei Institutes of Physical Science","ror":"https://ror.org/046n57345","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802624667"]},{"id":"https://openalex.org/I4210099079","display_name":"Institute of Intelligent Machines","ror":"https://ror.org/00w0qep84","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802624667","https://openalex.org/I4210099079"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Taosheng Xu","raw_affiliation_strings":["Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, 230031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, 230031, China","institution_ids":["https://openalex.org/I2802624667","https://openalex.org/I4210099079","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029560366","display_name":"Ning Su","orcid":"https://orcid.org/0000-0001-5559-7922"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210099079","display_name":"Institute of Intelligent Machines","ror":"https://ror.org/00w0qep84","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802624667","https://openalex.org/I4210099079"]},{"id":"https://openalex.org/I2802624667","display_name":"Hefei Institutes of Physical Science","ror":"https://ror.org/046n57345","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802624667"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ning Su","raw_affiliation_strings":["Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, 230031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, 230031, China","institution_ids":["https://openalex.org/I2802624667","https://openalex.org/I4210099079","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383342","display_name":"Lin Liu","orcid":"https://orcid.org/0000-0003-2843-5738"},"institutions":[{"id":"https://openalex.org/I170239107","display_name":"University of South Australia","ror":"https://ror.org/01p93h210","country_code":"AU","type":"education","lineage":["https://openalex.org/I170239107"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Lin Liu","raw_affiliation_strings":["School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095 Adelaide, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095 Adelaide, Australia","institution_ids":["https://openalex.org/I170239107"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100702169","display_name":"Junpeng Zhang","orcid":"https://orcid.org/0000-0001-6127-9701"},"institutions":[{"id":"https://openalex.org/I6593398","display_name":"Dali University","ror":"https://ror.org/02y7rck89","country_code":"CN","type":"education","lineage":["https://openalex.org/I6593398"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junpeng Zhang","raw_affiliation_strings":["School of Engineering, Dali University, Dali, 671003, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Engineering, Dali University, Dali, 671003, China","institution_ids":["https://openalex.org/I6593398"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100757645","display_name":"Hongqiang Wang","orcid":"https://orcid.org/0000-0003-1262-1958"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2802624667","display_name":"Hefei Institutes of Physical Science","ror":"https://ror.org/046n57345","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802624667"]},{"id":"https://openalex.org/I4210099079","display_name":"Institute of Intelligent Machines","ror":"https://ror.org/00w0qep84","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802624667","https://openalex.org/I4210099079"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongqiang Wang","raw_affiliation_strings":["Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, 230031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Machines, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, 230031, China","institution_ids":["https://openalex.org/I2802624667","https://openalex.org/I4210099079","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100457938","display_name":"Weijia Zhang","orcid":"https://orcid.org/0000-0001-8103-5325"},"institutions":[{"id":"https://openalex.org/I170239107","display_name":"University of South Australia","ror":"https://ror.org/01p93h210","country_code":"AU","type":"education","lineage":["https://openalex.org/I170239107"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Weijia Zhang","raw_affiliation_strings":["School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095 Adelaide, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095 Adelaide, Australia","institution_ids":["https://openalex.org/I170239107"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110740283","display_name":"Jie Gui","orcid":"https://orcid.org/0000-0002-9450-1759"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I41198531","display_name":"Nanjing University of Posts and Telecommunications","ror":"https://ror.org/043bpky34","country_code":"CN","type":"education","lineage":["https://openalex.org/I41198531"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jie Gui","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, 48109, United States","National Engineering Research Center of Communications and Networking, Nanjing University of Posts and Telecommunications, Nanjing, 210023, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, 48109, United States","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"National Engineering Research Center of Communications and Networking, Nanjing University of Posts and Telecommunications, Nanjing, 210023, China","institution_ids":["https://openalex.org/I41198531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719462","display_name":"Kui Yu","orcid":"https://orcid.org/0000-0003-2442-4572"},"institutions":[{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kui Yu","raw_affiliation_strings":["School of Computer and Information, Hefei University of Technology, Hefei, 230009, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Information, Hefei University of Technology, Hefei, 230009, China","institution_ids":["https://openalex.org/I16365422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012177739","display_name":"Jiuyong Li","orcid":"https://orcid.org/0000-0002-9023-1878"},"institutions":[{"id":"https://openalex.org/I170239107","display_name":"University of South Australia","ror":"https://ror.org/01p93h210","country_code":"AU","type":"education","lineage":["https://openalex.org/I170239107"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jiuyong Li","raw_affiliation_strings":["School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095 Adelaide, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095 Adelaide, Australia","institution_ids":["https://openalex.org/I170239107"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035846381","display_name":"Thuc Duy Le","orcid":"https://orcid.org/0000-0002-9732-4313"},"institutions":[{"id":"https://openalex.org/I170239107","display_name":"University of South Australia","ror":"https://ror.org/01p93h210","country_code":"AU","type":"education","lineage":["https://openalex.org/I170239107"]},{"id":"https://openalex.org/I4210140852","display_name":"Centre for Cancer Biology","ror":"https://ror.org/03yg7hz06","country_code":"AU","type":"facility","lineage":["https://openalex.org/I107656453","https://openalex.org/I170239107","https://openalex.org/I4210140852"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Thuc Duy Le","raw_affiliation_strings":["Centre for Cancer Biology, University of South Australia, SA, 5000 Adelaide, Australia. Thuc.Le@unisa.edu.au","School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095 Adelaide, Australia. Thuc.Le@unisa.edu.au","Centre for Cancer Biology, University of South Australia, SA, 5000 Adelaide, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cancer Biology, University of South Australia, SA, 5000 Adelaide, Australia. Thuc.Le@unisa.edu.au","institution_ids":[]},{"raw_affiliation_string":"School of Information Technology and Mathematical Sciences, University of South Australia, Mawson Lakes, SA, 5095 Adelaide, Australia. Thuc.Le@unisa.edu.au","institution_ids":[]},{"raw_affiliation_string":"Centre for Cancer Biology, University of South Australia, SA, 5000 Adelaide, Australia","institution_ids":["https://openalex.org/I4210140852","https://openalex.org/I170239107"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5035846381"],"corresponding_institution_ids":["https://openalex.org/I170239107","https://openalex.org/I4210140852"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.0416,"has_fulltext":true,"cited_by_count":89,"citation_normalized_percentile":{"value":0.92449723,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"19","issue":"S19","first_page":"514","last_page":"514"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mirbase","display_name":"MiRBase","score":0.9798890352249146},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9612935781478882},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6237001419067383},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.600074827671051},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3533473610877991},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34302252531051636},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2953428626060486},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.23743051290512085},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12697619199752808},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.07746478915214539}],"concepts":[{"id":"https://openalex.org/C49305753","wikidata":"https://www.wikidata.org/wiki/Q6826947","display_name":"MiRBase","level":4,"score":0.9798890352249146},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9612935781478882},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6237001419067383},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.600074827671051},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3533473610877991},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34302252531051636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2953428626060486},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.23743051290512085},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12697619199752808},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.07746478915214539},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-018-2531-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2531-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2531-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30598108","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30598108","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6311916","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6311916","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:deepblue.lib.umich.edu:2027.42/146768","is_oa":false,"landing_page_url":"http://hdl.handle.net/2027.42/146768","pdf_url":null,"source":{"id":"https://openalex.org/S4306400393","display_name":"Deep Blue (University of Michigan)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I27837315","host_organization_name":"University of Michigan","host_organization_lineage":["https://openalex.org/I27837315"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:8ebd75c51e87436fb9646b46a30eb183","is_oa":true,"landing_page_url":"https://doaj.org/article/8ebd75c51e87436fb9646b46a30eb183","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss S19, Pp 179-188 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5294682","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6311916","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:urm_publish:9916253209001831","is_oa":false,"landing_page_url":"https://hdl.handle.net/11541.2/135544","pdf_url":null,"source":{"id":"https://openalex.org/S4306402528","display_name":"UniSA Research Outputs Repository (University of South Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170239107","host_organization_name":"University of South Australia","host_organization_lineage":["https://openalex.org/I170239107"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2531-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2531-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2531-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G360527748","display_name":null,"funder_award_id":"IIPL-2016-003","funder_id":"https://openalex.org/F4320332588","funder_display_name":"Shanghai Key Laboratory of Intelligent Information Processing"},{"id":"https://openalex.org/G4773311257","display_name":null,"funder_award_id":"61572463","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5817035371","display_name":null,"funder_award_id":"61876206","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6012743596","display_name":null,"funder_award_id":"61702069","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G826466753","display_name":null,"funder_award_id":"1123042","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320332588","display_name":"Shanghai Key Laboratory of Intelligent Information Processing","ror":"https://ror.org/013q1eq08"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320335203","display_name":"Hefei Institutes of Physical Science, Chinese Academy of Sciences","ror":"https://ror.org/046n57345"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952528394.pdf","grobid_xml":"https://content.openalex.org/works/W2952528394.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1900337607","https://openalex.org/W1976942746","https://openalex.org/W1986519866","https://openalex.org/W1995856480","https://openalex.org/W2001554877","https://openalex.org/W2002995168","https://openalex.org/W2003816656","https://openalex.org/W2010461414","https://openalex.org/W2014946489","https://openalex.org/W2017426710","https://openalex.org/W2028387032","https://openalex.org/W2048270152","https://openalex.org/W2061888576","https://openalex.org/W2066024172","https://openalex.org/W2070571588","https://openalex.org/W2077327925","https://openalex.org/W2095463689","https://openalex.org/W2105549148","https://openalex.org/W2112192177","https://openalex.org/W2117977572","https://openalex.org/W2123079914","https://openalex.org/W2124756133","https://openalex.org/W2133658633","https://openalex.org/W2133968430","https://openalex.org/W2134097555","https://openalex.org/W2134118500","https://openalex.org/W2134629862","https://openalex.org/W2137257434","https://openalex.org/W2143516113","https://openalex.org/W2159675211","https://openalex.org/W2160697532","https://openalex.org/W2166240615","https://openalex.org/W2171322586","https://openalex.org/W2197980526","https://openalex.org/W2322942874","https://openalex.org/W2343700030","https://openalex.org/W2536204818","https://openalex.org/W2552676993","https://openalex.org/W2597632520","https://openalex.org/W2767546566"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W2011682793","https://openalex.org/W2109288169","https://openalex.org/W2157684052","https://openalex.org/W2891209917","https://openalex.org/W2952528394","https://openalex.org/W43224192","https://openalex.org/W2536204818","https://openalex.org/W90653389","https://openalex.org/W2162995709"],"abstract_inverted_index":{"BACKGROUND:":[0],"miRBase":[1,73,88,113],"is":[2,146,170,214],"the":[3,16,23,67,82,111,153,157,178,215,221,255,304],"primary":[4],"repository":[5],"for":[6,19,60,125,167,194,202,218,235,267],"published":[7,51,243],"miRNA":[8,20,43,129,196,222,236,244,271,295],"sequence":[9],"and":[10,13,25,49,65,89,127,136,150,180,201,205,232,254,269,277,297],"annotation":[11,26],"data,":[12],"serves":[14],"as":[15,173,182],"\"go-to\"":[17],"place":[18],"research.":[21],"However,":[22],"definition":[24],"of":[27,36,63,69,77,97,123,142,265,283,292,303,306],"miRNAs":[28,70,86,207,305],"have":[29,57],"been":[30,58],"changed":[31],"significantly":[32],"across":[33],"different":[34,47,53,61,72,98,140,247,281],"versions":[35,141,282],"miRBase.":[37,143,210,284],"The":[38,144,225,250,285],"changes":[39],"cause":[40],"inconsistency":[41],"in":[42,87,100,117,139,148,198,280,294],"related":[44],"data":[45,245],"between":[46,71],"databases":[48],"articles":[50],"at":[52,186],"times.":[54],"Several":[55],"tools":[56,99],"developed":[59],"purposes":[62],"querying":[64,195,220],"converting":[66,126,268],"information":[68,84,138,197,279],"versions,":[74],"but":[75],"none":[76],"them":[78],"individually":[79],"can":[80],"provide":[81,120,229,262,299],"comprehensive":[83,231],"about":[85],"users":[90,169],"will":[91,287],"need":[92],"to":[93,119,228,261],"use":[94],"a":[95,121,174,183,191,230,263,289,300],"number":[96],"their":[101],"analyses.":[102],"RESULTS:":[103],"We":[104],"introduce":[105],"miRBaseConverter,":[106],"an":[107],"R":[108,149],"package":[109,145,179,226,252,286],"integrating":[110],"latest":[112],"version":[114,135,276],"22":[115],"available":[116,151,172],"Bioconductor":[118,158,251],"suite":[122,264],"functions":[124,266],"retrieving":[128,270],"name":[130],"(ID),":[131],"accession,":[132,273],"sequence,":[133,274],"species,":[134,275],"family":[137,223,278],"implemented":[147],"under":[152],"GPL-2":[154],"license":[155],"from":[156,177,246],"website":[159],"(":[160],"http://bioconductor.org/packages/miRBaseConverter/":[161],").":[162],"A":[163],"Shiny-based":[164,256],"GUI":[165],"suitable":[166],"non-R":[168],"also":[171,181],"standalone":[175],"application":[176,185,258],"web":[184,257],"http://nugget.unisa.edu.au:3838/miRBaseConverter":[187],".":[188],"miRBaseConverter":[189,253],"has":[190],"built-in":[192],"database":[193],"all":[199],"species":[200],"both":[203],"pre-mature":[204],"mature":[206],"defined":[208],"by":[209],"In":[211],"addition,":[212],"it":[213],"first":[216],"tool":[217,234],"batch":[219],"information.":[224],"aims":[227],"easy-to-use":[233],"research":[237,296],"community":[238],"where":[239],"researchers":[240],"often":[241],"utilize":[242],"sources.":[248],"CONCLUSIONS:":[249],"are":[259],"presented":[260],"name,":[272],"serve":[288],"wide":[290],"range":[291],"applications":[293],"could":[298],"full":[301],"view":[302],"interest.":[307]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2019-06-27T00:00:00"}
