{"id":"https://openalex.org/W2902090272","doi":"https://doi.org/10.1186/s12859-018-2514-6","title":"Antimicrobial peptide similarity and classification through rough set theory using physicochemical boundaries","display_name":"Antimicrobial peptide similarity and classification through rough set theory using physicochemical boundaries","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2902090272","doi":"https://doi.org/10.1186/s12859-018-2514-6","mag":"2902090272","pmid":"https://pubmed.ncbi.nlm.nih.gov/30522443"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2514-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2514-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2514-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2514-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024756311","display_name":"Kyle Boone","orcid":"https://orcid.org/0000-0001-6383-6479"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Boone","raw_affiliation_strings":["Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 5109, 1530 W 15th Street, Lawrence, KS, 66045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 5109, 1530 W 15th Street, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066191241","display_name":"Kyle V. Camarda","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Camarda","raw_affiliation_strings":["Chemical and Petroleum Engineering Department, University of Kansas, Learned Hall, Room 4154, 1530 West 15th Street, Lawrence, KS, 66045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chemical and Petroleum Engineering Department, University of Kansas, Learned Hall, Room 4154, 1530 West 15th Street, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044702300","display_name":"Paulette Spencer","orcid":"https://orcid.org/0000-0003-1447-826X"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paulette Spencer","raw_affiliation_strings":["Mechanical Engineering Department, Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 3111, 1530 West 15th Street, Lawrence, KS, 66045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mechanical Engineering Department, Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 3111, 1530 West 15th Street, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065968105","display_name":"Candan Tamerler","orcid":"https://orcid.org/0000-0002-1960-2218"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]},{"id":"https://openalex.org/I4210145583","display_name":"Bioengineering Center","ror":"https://ror.org/04f0ydx59","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210145583"]}],"countries":["RU","US"],"is_corresponding":true,"raw_author_name":"Candan Tamerler","raw_affiliation_strings":["Mechanical Engineering Department, Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 3135A, 1530 W 15th St, Lawrence, KS, 66045, USA. ctamerler@ku.edu","Mechanical Engineering Department, Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 3135A, 1530 W 15th St, Lawrence, KS, 66045, USA"],"raw_orcid":"https://orcid.org/0000-0002-1960-2218","affiliations":[{"raw_affiliation_string":"Mechanical Engineering Department, Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 3135A, 1530 W 15th St, Lawrence, KS, 66045, USA. ctamerler@ku.edu","institution_ids":["https://openalex.org/I4210145583"]},{"raw_affiliation_string":"Mechanical Engineering Department, Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 3135A, 1530 W 15th St, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5065968105"],"corresponding_institution_ids":["https://openalex.org/I146416000","https://openalex.org/I4210145583"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.6562,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.93876845,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"19","issue":"1","first_page":"469","last_page":"469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.7228000164031982,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.7228000164031982,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.07370000332593918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.0617000013589859,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6764894723892212},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5481564998626709},{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.5278398990631104},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4997093677520752},{"id":"https://openalex.org/keywords/rough-set","display_name":"Rough set","score":0.49686864018440247},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4927397072315216},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.46281516551971436},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4315205514431},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.356983482837677},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33967188000679016},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.326911985874176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2608238756656647},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1404331624507904},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.13964560627937317},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.1306597888469696},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07598230242729187}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6764894723892212},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5481564998626709},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.5278398990631104},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4997093677520752},{"id":"https://openalex.org/C111012933","wikidata":"https://www.wikidata.org/wiki/Q3137210","display_name":"Rough set","level":2,"score":0.49686864018440247},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4927397072315216},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.46281516551971436},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4315205514431},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.356983482837677},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33967188000679016},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.326911985874176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2608238756656647},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1404331624507904},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13964560627937317},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.1306597888469696},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07598230242729187},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-018-2514-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2514-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2514-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30522443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30522443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6282327","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6282327","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:8b34fcbadb46447ba736ca4396cdd8e6","is_oa":true,"landing_page_url":"https://doaj.org/article/8b34fcbadb46447ba736ca4396cdd8e6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5256015","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6282327","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:kuscholarworks.ku.edu:1808/29804","is_oa":true,"landing_page_url":"http://hdl.handle.net/1808/29804","pdf_url":null,"source":{"id":"https://openalex.org/S4306400421","display_name":"KU ScholarWorks (The University of Kansas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I146416000","host_organization_name":"University of Kansas","host_organization_lineage":["https://openalex.org/I146416000"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2514-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2514-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2514-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1796441542","display_name":null,"funder_award_id":"DE025476","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G2690760647","display_name":null,"funder_award_id":"R01DE025476","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4437381613","display_name":null,"funder_award_id":"R01DE022054","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G4699390085","display_name":null,"funder_award_id":"R21 AR062249","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"},{"id":"https://openalex.org/G6060359808","display_name":null,"funder_award_id":"AR062249-03","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"},{"id":"https://openalex.org/G6481838377","display_name":null,"funder_award_id":"R01DE025476","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G6651703470","display_name":null,"funder_award_id":"R01 DE025476","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G6987145265","display_name":null,"funder_award_id":"R01 DE022054","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G7149847372","display_name":null,"funder_award_id":"R01DE022054","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8919448161","display_name":null,"funder_award_id":"3R01DE022054-04S1","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"}],"funders":[{"id":"https://openalex.org/F4320308668","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337362","display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","ror":"https://ror.org/006zn3t30"},{"id":"https://openalex.org/F4320337365","display_name":"National Institute of Dental and Craniofacial Research","ror":"https://ror.org/004a2wv92"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2902090272.pdf","grobid_xml":"https://content.openalex.org/works/W2902090272.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W1486212524","https://openalex.org/W1507205226","https://openalex.org/W1513618424","https://openalex.org/W1573695335","https://openalex.org/W1872996274","https://openalex.org/W1914617498","https://openalex.org/W1964667833","https://openalex.org/W1975313075","https://openalex.org/W1976178947","https://openalex.org/W1977241485","https://openalex.org/W1987735546","https://openalex.org/W1988531810","https://openalex.org/W1991028942","https://openalex.org/W1991045584","https://openalex.org/W1992603413","https://openalex.org/W1998064689","https://openalex.org/W2015490529","https://openalex.org/W2024342748","https://openalex.org/W2033757486","https://openalex.org/W2035755292","https://openalex.org/W2043338013","https://openalex.org/W2051699170","https://openalex.org/W2066352661","https://openalex.org/W2074988297","https://openalex.org/W2083416546","https://openalex.org/W2087125825","https://openalex.org/W2092404853","https://openalex.org/W2094494364","https://openalex.org/W2097099115","https://openalex.org/W2097874743","https://openalex.org/W2110119381","https://openalex.org/W2115792147","https://openalex.org/W2129115651","https://openalex.org/W2130253098","https://openalex.org/W2130479394","https://openalex.org/W2132075562","https://openalex.org/W2136362180","https://openalex.org/W2148074855","https://openalex.org/W2151084977","https://openalex.org/W2156125289","https://openalex.org/W2157963336","https://openalex.org/W2159767366","https://openalex.org/W2161062388","https://openalex.org/W2167456918","https://openalex.org/W2171165413","https://openalex.org/W2171781500","https://openalex.org/W2175270296","https://openalex.org/W2189116376","https://openalex.org/W2243973145","https://openalex.org/W2278373797","https://openalex.org/W2339719866","https://openalex.org/W2402480458","https://openalex.org/W2464864096","https://openalex.org/W2465491169","https://openalex.org/W2474880329","https://openalex.org/W2521491383","https://openalex.org/W2525580669","https://openalex.org/W2535433376","https://openalex.org/W2536217206","https://openalex.org/W2558715379","https://openalex.org/W2571531214","https://openalex.org/W2588463038","https://openalex.org/W2588467130","https://openalex.org/W2588631349","https://openalex.org/W2604779599","https://openalex.org/W2614793868","https://openalex.org/W2619285227","https://openalex.org/W2765656961","https://openalex.org/W2765783049","https://openalex.org/W2766127942","https://openalex.org/W2784222933","https://openalex.org/W2787850129","https://openalex.org/W2807001312","https://openalex.org/W3148499142","https://openalex.org/W6964921961"],"related_works":["https://openalex.org/W2392963705","https://openalex.org/W2382278777","https://openalex.org/W2107349454","https://openalex.org/W2353240132","https://openalex.org/W1964260090","https://openalex.org/W2375932290","https://openalex.org/W1486178390","https://openalex.org/W138553499","https://openalex.org/W2167403502","https://openalex.org/W2027352683"],"abstract_inverted_index":{"BACKGROUND:":[0],"Antimicrobial":[1],"peptides":[2,44,89,92,119,134,143],"attract":[3],"considerable":[4],"interest":[5],"as":[6,20],"novel":[7],"agents":[8],"to":[9,30,58,86,160,174,191,230,237,254,270,309,321],"combat":[10],"infections.":[11],"Their":[12],"long-time":[13],"potency":[14],"across":[15],"bacteria,":[16],"viruses":[17],"and":[18,66,117,135,141,242,251],"fungi":[19],"part":[21],"of":[22,42,75,115,130,186,316,325],"diverse":[23],"innate":[24],"immune":[25],"systems":[26],"offers":[27],"a":[28,52,99,145,189,192,221,322],"solution":[29],"overcome":[31],"the":[32,39,47,72,136,150,155,165,184,273,292,314],"rising":[33],"concerns":[34],"from":[35,90,276],"antibiotic":[36],"resistance.":[37],"With":[38],"rapid":[40],"increase":[41,207,214],"antimicrobial":[43,76],"reported":[45],"in":[46,98,144],"databases,":[48],"peptide":[49,68,326],"selection":[50],"becomes":[51],"challenge.":[53],"We":[54,78,259],"propose":[55],"similarity":[56,131,151],"analyses":[57],"describe":[59],"key":[60],"properties":[61,74,318],"that":[62,168,204,263,295],"distinguish":[63],"between":[64,139],"active":[65,88,116,133,140,274],"non-active":[67],"sequences":[69,275],"building":[70],"upon":[71],"physicochemical":[73,123,128,137,265,317],"peptides.":[77,176,278],"used":[79,154,173,229],"an":[80],"iterative":[81],"supervised":[82],"machine":[83],"learning":[84],"approach":[85,170],"classify":[87,175,272],"inactive":[91,118,142,277],"with":[93,299],"low":[94,222],"false":[95,205,211,223],"discovery":[96,224],"rates":[97],"relatively":[100],"short":[101],"computational":[102,215],"search":[103,216],"time.":[104],"RESULTS:":[105],"By":[106],"generating":[107],"explicit":[108],"boundaries,":[109,152],"our":[110,161,218,232,289],"method":[111,182,196,219,236,290,303],"defines":[112],"new":[113,323],"categories":[114],"based":[120,243],"on":[121,244],"their":[122],"properties.":[124],"Consequently,":[125],"it":[126],"describes":[127],"characteristics":[129],"among":[132],"boundaries":[138,266,315],"single":[146],"process.":[147],"To":[148],"build":[149],"we":[153,247],"rough":[156,179,233],"set":[157,180,234],"theory":[158,181,235],"approach;":[159],"knowledge,":[162],"this":[163,169,245],"is":[164,197],"first":[166],"time":[167],"has":[171],"been":[172],"The":[177,302],"modified":[178],"limits":[183],"number":[185],"values":[187],"describing":[188],"boundary":[190],"user-defined":[193],"limit.":[194],"Our":[195],"optimized":[198],"for":[199],"specificity":[200],"over":[201],"selectivity.":[202],"Noting":[203],"positives":[206],"activity":[208],"assays":[209],"while":[210],"negatives":[212],"only":[213],"time,":[217],"provided":[220],"rate.":[225],"Published":[226],"datasets":[227],"were":[228],"compare":[231],"other":[238],"published":[239],"classification":[240,280],"methods":[241,281],"comparison,":[246],"achieved":[248],"high":[249],"selectivity":[250],"comparable":[252,305],"sensitivity":[253],"currently":[255,310],"available":[256,311],"methods.":[257,312],"CONCLUSIONS:":[258],"developed":[260],"rule":[261,293],"sets":[262,294],"define":[264],"which":[267],"allow":[268],"us":[269],"directly":[271],"Existing":[279],"are":[282],"either":[283],"sequence-order":[284],"insensitive":[285],"or":[286,306],"length-dependent,":[287],"whereas":[288],"generates":[291],"combine":[296],"order-sensitive":[297],"descriptors":[298],"length-independent":[300],"descriptors.":[301],"provides":[304],"improved":[307],"performance":[308],"Discovering":[313],"may":[319],"lead":[320],"understanding":[324],"similarity.":[327]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":7}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}
