{"id":"https://openalex.org/W2953317739","doi":"https://doi.org/10.1186/s12859-018-2510-x","title":"High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow","display_name":"High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2953317739","doi":"https://doi.org/10.1186/s12859-018-2510-x","mag":"2953317739","pmid":"https://pubmed.ncbi.nlm.nih.gov/30577742"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2510-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2510-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2510-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2510-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065662869","display_name":"Jonathan Ozik","orcid":"https://orcid.org/0000-0002-3495-6735"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan Ozik","raw_affiliation_strings":["Argonne National Laboratory, Argonne, IL, USA","Argonne National Laboratory, Argonne, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Argonne, IL, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Argonne National Laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064138452","display_name":"Nicholson Collier","orcid":"https://orcid.org/0000-0002-2376-4156"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholson Collier","raw_affiliation_strings":["Argonne National Laboratory, Argonne, IL, USA","Argonne National Laboratory, Argonne, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Argonne, IL, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Argonne National Laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020776475","display_name":"Justin M. Wozniak","orcid":"https://orcid.org/0000-0002-2441-2048"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin M. Wozniak","raw_affiliation_strings":["Argonne National Laboratory, Argonne, IL, USA","Argonne National Laboratory, Argonne, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Argonne, IL, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Argonne National Laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069616469","display_name":"Charles M. Macal","orcid":"https://orcid.org/0000-0001-9167-0699"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Macal","raw_affiliation_strings":["Argonne National Laboratory, Argonne, IL, USA","Argonne National Laboratory, Argonne, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Argonne, IL, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Argonne National Laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112042579","display_name":"Chase Cockrell","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chase Cockrell","raw_affiliation_strings":["Dept. of Surgery, University of Chicago, Chicago, IL, USA","Dept. of Surgery, University of Chicago, Chicago, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Surgery, University of Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Dept. of Surgery, University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019288997","display_name":"Samuel H. Friedman","orcid":"https://orcid.org/0000-0001-8003-6860"},"institutions":[{"id":"https://openalex.org/I4210087673","display_name":"Opto-Knowledge Systems (United States)","ror":"https://ror.org/002hd9629","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087673"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel H. Friedman","raw_affiliation_strings":["Opto-Knowledge Systems, Inc., Torrance, CA, USA","Opto-Knowledge Systems, Inc., Torrance, USA"],"affiliations":[{"raw_affiliation_string":"Opto-Knowledge Systems, Inc., Torrance, CA, USA","institution_ids":["https://openalex.org/I4210087673"]},{"raw_affiliation_string":"Opto-Knowledge Systems, Inc., Torrance, USA","institution_ids":["https://openalex.org/I4210087673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031086500","display_name":"Ahmadreza Ghaffarizadeh","orcid":"https://orcid.org/0000-0002-9359-8800"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ahmadreza Ghaffarizadeh","raw_affiliation_strings":["Lawrence J. Ellison Center for Transformative Medicine, University of Southern California, Los Angeles, CA, USA","Lawrence J. Ellison Center for Transformative Medicine, University of Southern California, Los Angeles, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence J. Ellison Center for Transformative Medicine, University of Southern California, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Lawrence J. Ellison Center for Transformative Medicine, University of Southern California, Los Angeles, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058904152","display_name":"Randy Heiland","orcid":"https://orcid.org/0000-0002-7440-2905"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Randy Heiland","raw_affiliation_strings":["Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA","Intelligent Systems Engineering, Indiana University, Bloomington, USA"],"affiliations":[{"raw_affiliation_string":"Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Intelligent Systems Engineering, Indiana University, Bloomington, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042696510","display_name":"Gary An","orcid":"https://orcid.org/0000-0003-4549-9004"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary An","raw_affiliation_strings":["Dept. of Surgery, University of Chicago, Chicago, IL, USA","Dept. of Surgery, University of Chicago, Chicago, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Surgery, University of Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Dept. of Surgery, University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052380564","display_name":"Paul Macklin","orcid":"https://orcid.org/0000-0002-9925-0151"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Paul Macklin","raw_affiliation_strings":["Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA. macklinp@iu.edu","Intelligent Systems Engineering, Indiana University, Bloomington, USA"],"affiliations":[{"raw_affiliation_string":"Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA. macklinp@iu.edu","institution_ids":[]},{"raw_affiliation_string":"Intelligent Systems Engineering, Indiana University, Bloomington, USA","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5052380564"],"corresponding_institution_ids":["https://openalex.org/I4210119109"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.5351,"has_fulltext":true,"cited_by_count":65,"citation_normalized_percentile":{"value":0.95555168,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"19","issue":"S18","first_page":"483","last_page":"483"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7407031059265137},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7354835271835327},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.6358387470245361},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4883708357810974},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4630351960659027},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3930491805076599},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33510690927505493},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3073693811893463}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7407031059265137},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7354835271835327},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.6358387470245361},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4883708357810974},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4630351960659027},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3930491805076599},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33510690927505493},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3073693811893463},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-018-2510-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2510-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2510-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30577742","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30577742","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:osti.gov:1493923","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1493923","pdf_url":"https://www.osti.gov/servlets/purl/1493923","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:3b54ab4e9252442b8bb4f95b1ea476f1","is_oa":true,"landing_page_url":"https://doaj.org/article/3b54ab4e9252442b8bb4f95b1ea476f1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss S18, Pp 81-97 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5287154","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6302449","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:iu.tind.io:1084","is_oa":false,"landing_page_url":"http://iu.tind.io/record/1084","pdf_url":null,"source":{"id":"https://openalex.org/S4306402656","display_name":"IUScholarWorks Open (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://iu.tind.io/record/1084","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6302449","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6302449","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2510-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2510-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2510-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1015216249","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1065316766","display_name":null,"funder_award_id":"Award","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1116540683","display_name":null,"funder_award_id":"DE-AC02-06CH11","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1751644051","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1844751952","display_name":null,"funder_award_id":"DE-AC02_06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2046628644","display_name":null,"funder_award_id":"#B616283","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G2270367297","display_name":null,"funder_award_id":"Award","funder_id":"https://openalex.org/F4320306260","funder_display_name":"Breast Cancer Research Foundation"},{"id":"https://openalex.org/G254035773","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G2754454295","display_name":null,"funder_award_id":"DE-AC02-06CH11357.","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2777053550","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3000213308","display_name":null,"funder_award_id":"DE-AC02-06CH113","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G3232922872","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G3318903820","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3801222974","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G3925338917","display_name":null,"funder_award_id":"R01GM115839","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3993168407","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G4003678348","display_name":null,"funder_award_id":"S10OD018","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4145457401","display_name":null,"funder_award_id":"DE-AC02-06CH113","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G425189044","display_name":null,"funder_award_id":"DE-AC02-05CH","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4392917094","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4699350723","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4877169874","display_name":null,"funder_award_id":"DE-AC02-06CH11357.","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5001603810","display_name":null,"funder_award_id":"17-SC-20-S","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5802748842","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6085113958","display_name":null,"funder_award_id":"E-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6209044371","display_name":null,"funder_award_id":"B616283","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G6429026066","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G650626725","display_name":null,"funder_award_id":"E-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6699942780","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6848031779","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6859237865","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6918803902","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7351994996","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7406122311","display_name":null,"funder_award_id":"AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7664691372","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7825954517","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8143874970","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8227349700","display_name":null,"funder_award_id":"1720625","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8234470690","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8253304997","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8314672274","display_name":null,"funder_award_id":"DE-AC02-06CH11","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306260","display_name":"Breast Cancer Research Foundation","ror":"https://ror.org/0348ff195"},{"id":"https://openalex.org/F4320316625","display_name":"Jayne Koskinas Ted Giovanis Foundation for Health and Policy","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332369","display_name":"National Nuclear Security Administration","ror":"https://ror.org/03sk1we31"},{"id":"https://openalex.org/F4320338286","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953317739.pdf","grobid_xml":"https://content.openalex.org/works/W2953317739.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W82764054","https://openalex.org/W85719053","https://openalex.org/W251810509","https://openalex.org/W638753378","https://openalex.org/W973310309","https://openalex.org/W1482729585","https://openalex.org/W1580540249","https://openalex.org/W1659842140","https://openalex.org/W1891141189","https://openalex.org/W1919520516","https://openalex.org/W1967060514","https://openalex.org/W1970941056","https://openalex.org/W1971514365","https://openalex.org/W2009913017","https://openalex.org/W2018722597","https://openalex.org/W2022702208","https://openalex.org/W2044835625","https://openalex.org/W2045434770","https://openalex.org/W2049491375","https://openalex.org/W2064360454","https://openalex.org/W2066671159","https://openalex.org/W2069531683","https://openalex.org/W2082447375","https://openalex.org/W2082652742","https://openalex.org/W2092375071","https://openalex.org/W2098367419","https://openalex.org/W2101332957","https://openalex.org/W2112270062","https://openalex.org/W2119124369","https://openalex.org/W2122995470","https://openalex.org/W2124185479","https://openalex.org/W2127225632","https://openalex.org/W2128095147","https://openalex.org/W2137700068","https://openalex.org/W2142171814","https://openalex.org/W2150908245","https://openalex.org/W2152558226","https://openalex.org/W2153712501","https://openalex.org/W2163305918","https://openalex.org/W2165088034","https://openalex.org/W2169716006","https://openalex.org/W2172015659","https://openalex.org/W2176008734","https://openalex.org/W2256248976","https://openalex.org/W2314428698","https://openalex.org/W2323550971","https://openalex.org/W2334873176","https://openalex.org/W2408410815","https://openalex.org/W2500357783","https://openalex.org/W2515436849","https://openalex.org/W2530996262","https://openalex.org/W2559351623","https://openalex.org/W2560367415","https://openalex.org/W2566589469","https://openalex.org/W2577818097","https://openalex.org/W2593773150","https://openalex.org/W2601194936","https://openalex.org/W2738453970","https://openalex.org/W2753216119","https://openalex.org/W2914331073","https://openalex.org/W2949797623","https://openalex.org/W4206723194","https://openalex.org/W4242505789","https://openalex.org/W4254777883","https://openalex.org/W6892757795"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2039578808"],"abstract_inverted_index":{"While":[0],"key":[1,23],"notational":[2],"and":[3,10,20,42],"computational":[4,29],"challenges":[5],"remain,":[6],"mechanistic":[7],"agent-based":[8],"models":[9],"high-throughput":[11,28],"model":[12],"exploration":[13],"environments":[14],"can":[15,31],"be":[16],"combined":[17],"to":[18],"systematically":[19],"rapidly":[21],"explore":[22],"problems":[24],"in":[25],"cancer.":[26],"These":[27],"experiments":[30],"improve":[32],"our":[33],"understanding":[34],"of":[35],"the":[36],"underlying":[37],"biology,":[38],"drive":[39],"future":[40],"experiments,":[41],"ultimately":[43],"inform":[44],"clinical":[45],"practice.":[46]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":3}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
