{"id":"https://openalex.org/W2777443976","doi":"https://doi.org/10.1186/s12859-018-2506-6","title":"High-throughput binding affinity calculations at extreme scales","display_name":"High-throughput binding affinity calculations at extreme scales","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2777443976","doi":"https://doi.org/10.1186/s12859-018-2506-6","mag":"2777443976","pmid":"https://pubmed.ncbi.nlm.nih.gov/30577753"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2506-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2506-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2506-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2506-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063744091","display_name":"Jumana Dakka","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jumana Dakka","raw_affiliation_strings":["Department Electrical and Computer Engineering, Rutgers University, 94 Brett Road, Piscataway, NJ, USA","Department Electrical and Computer Engineering, Rutgers University, Piscataway, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Electrical and Computer Engineering, Rutgers University, 94 Brett Road, Piscataway, NJ, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department Electrical and Computer Engineering, Rutgers University, Piscataway, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009954932","display_name":"Matteo Turilli","orcid":"https://orcid.org/0000-0003-0527-1435"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matteo Turilli","raw_affiliation_strings":["Department Electrical and Computer Engineering, Rutgers University, 94 Brett Road, Piscataway, NJ, USA","Department Electrical and Computer Engineering, Rutgers University, Piscataway, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Electrical and Computer Engineering, Rutgers University, 94 Brett Road, Piscataway, NJ, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department Electrical and Computer Engineering, Rutgers University, Piscataway, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066932343","display_name":"David W. Wright","orcid":"https://orcid.org/0000-0002-5124-8044"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David W. Wright","raw_affiliation_strings":["Centre for Computational Sciences, UCL, 20 Gordon Street, London, UK","Centre for Computational Sciences, UCL, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Computational Sciences, UCL, 20 Gordon Street, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Centre for Computational Sciences, UCL, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046138213","display_name":"Stefan J. Zasada","orcid":"https://orcid.org/0000-0003-4643-4982"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stefan J. Zasada","raw_affiliation_strings":["Centre for Computational Sciences, UCL, 20 Gordon Street, London, UK","Centre for Computational Sciences, UCL, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Computational Sciences, UCL, 20 Gordon Street, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Centre for Computational Sciences, UCL, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088959784","display_name":"Vivek Balasubramanian","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vivek Balasubramanian","raw_affiliation_strings":["Department Electrical and Computer Engineering, Rutgers University, 94 Brett Road, Piscataway, NJ, USA","Department Electrical and Computer Engineering, Rutgers University, Piscataway, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Electrical and Computer Engineering, Rutgers University, 94 Brett Road, Piscataway, NJ, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department Electrical and Computer Engineering, Rutgers University, Piscataway, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080572714","display_name":"Shunzhou Wan","orcid":"https://orcid.org/0000-0001-7192-1999"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Shunzhou Wan","raw_affiliation_strings":["Centre for Computational Sciences, UCL, 20 Gordon Street, London, UK","Centre for Computational Sciences, UCL, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Computational Sciences, UCL, 20 Gordon Street, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Centre for Computational Sciences, UCL, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066453821","display_name":"Peter V. Coveney","orcid":"https://orcid.org/0000-0002-8787-7256"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter V. Coveney","raw_affiliation_strings":["Centre for Computational Sciences, UCL, 20 Gordon Street, London, UK","Centre for Computational Sciences, UCL, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Computational Sciences, UCL, 20 Gordon Street, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Centre for Computational Sciences, UCL, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038763846","display_name":"Shantenu Jha","orcid":"https://orcid.org/0000-0002-5040-026X"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I200870766","display_name":"Brookhaven National Laboratory","ror":"https://ror.org/02ex6cf31","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I200870766","https://openalex.org/I39565521","https://openalex.org/I4210142672"]},{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shantenu Jha","raw_affiliation_strings":["Computational Science Initiative, Brookhaven National Laboratory, 98 Rochester St, Shirley, NY, USA. shantenu.jha@rutgers.edu","Department Electrical and Computer Engineering, Rutgers University, 94 Brett Road, Piscataway, NJ, USA. shantenu.jha@rutgers.edu","Institute for Advanced Computational Sciences, Stony Brook University, NY, USA, Lake Dr, Laufer Center, Stony Brook, NY, USA. shantenu.jha@rutgers.edu","Computational Science Initiative, Brookhaven National Laboratory, Shirley, USA","Department Electrical and Computer Engineering, Rutgers University, Piscataway, USA","Institute for Advanced Computational Sciences, Stony Brook University, NY, USA, Stony Brook, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Science Initiative, Brookhaven National Laboratory, 98 Rochester St, Shirley, NY, USA. shantenu.jha@rutgers.edu","institution_ids":["https://openalex.org/I200870766"]},{"raw_affiliation_string":"Department Electrical and Computer Engineering, Rutgers University, 94 Brett Road, Piscataway, NJ, USA. shantenu.jha@rutgers.edu","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Institute for Advanced Computational Sciences, Stony Brook University, NY, USA, Lake Dr, Laufer Center, Stony Brook, NY, USA. shantenu.jha@rutgers.edu","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Computational Science Initiative, Brookhaven National Laboratory, Shirley, USA","institution_ids":["https://openalex.org/I200870766"]},{"raw_affiliation_string":"Department Electrical and Computer Engineering, Rutgers University, Piscataway, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Institute for Advanced Computational Sciences, Stony Brook University, NY, USA, Stony Brook, USA","institution_ids":["https://openalex.org/I59553526"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2145,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.51954678,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"19","issue":"S18","first_page":"482","last_page":"482"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.5534999966621399,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.5534999966621399,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.13099999725818634,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.060499999672174454,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6555429697036743},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6064658761024475},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5282142758369446},{"id":"https://openalex.org/keywords/molecular-binding","display_name":"Molecular binding","score":0.4917736351490021},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4856387674808502},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.45049771666526794},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.4350751042366028},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.29038292169570923},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1339924931526184},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12590447068214417}],"concepts":[{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6555429697036743},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6064658761024475},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5282142758369446},{"id":"https://openalex.org/C2777735830","wikidata":"https://www.wikidata.org/wiki/Q6507061","display_name":"Molecular binding","level":3,"score":0.4917736351490021},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4856387674808502},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.45049771666526794},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.4350751042366028},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.29038292169570923},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1339924931526184},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12590447068214417},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1186/s12859-018-2506-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2506-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2506-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30577753","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30577753","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:1712.09168","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1712.09168","pdf_url":"https://arxiv.org/pdf/1712.09168","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2777443976","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1712.09168v4","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:doaj.org/article:ed23a44c1e604c5da2d52bdae461bfe1","is_oa":false,"landing_page_url":"https://doaj.org/article/ed23a44c1e604c5da2d52bdae461bfe1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss S18, Pp 33-45 (2018)","raw_type":"article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10064861","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10064861/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   BMC Bioinformatics , 19  (Suppl 18)    , Article 482. (2018)      ","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:5287051","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6302294","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:osti.gov:1626773","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626773","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6302294","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6302294","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"doi:10.48550/arxiv.1712.09168","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1712.09168","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2506-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2506-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2506-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6700000166893005,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G7331901853","display_name":null,"funder_award_id":"EU H2020","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2777443976.pdf","grobid_xml":"https://content.openalex.org/works/W2777443976.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W60075760","https://openalex.org/W1966509953","https://openalex.org/W1968984443","https://openalex.org/W2014060139","https://openalex.org/W2015616444","https://openalex.org/W2016809033","https://openalex.org/W2018294192","https://openalex.org/W2033346155","https://openalex.org/W2039353947","https://openalex.org/W2058206198","https://openalex.org/W2062294298","https://openalex.org/W2084550263","https://openalex.org/W2093221728","https://openalex.org/W2104567958","https://openalex.org/W2112005274","https://openalex.org/W2118233996","https://openalex.org/W2122025954","https://openalex.org/W2127116424","https://openalex.org/W2139560553","https://openalex.org/W2142793137","https://openalex.org/W2147993766","https://openalex.org/W2150981663","https://openalex.org/W2156373035","https://openalex.org/W2221713243","https://openalex.org/W2294876259","https://openalex.org/W2404280981","https://openalex.org/W2412298807","https://openalex.org/W2556999899","https://openalex.org/W2560233715","https://openalex.org/W2565472021","https://openalex.org/W2566391875","https://openalex.org/W2597477172","https://openalex.org/W2610740470","https://openalex.org/W2613362156","https://openalex.org/W2769738407","https://openalex.org/W2770387129","https://openalex.org/W2781848074","https://openalex.org/W2800994818","https://openalex.org/W2963104418","https://openalex.org/W2963270656","https://openalex.org/W2963550297","https://openalex.org/W2964077466","https://openalex.org/W2964210303"],"related_works":["https://openalex.org/W2963368932","https://openalex.org/W1976044546","https://openalex.org/W2643648096","https://openalex.org/W2962780362","https://openalex.org/W3098306447","https://openalex.org/W2551297543","https://openalex.org/W2051602592","https://openalex.org/W2947383827","https://openalex.org/W1541843567","https://openalex.org/W3180820756","https://openalex.org/W2770891241","https://openalex.org/W3201778843","https://openalex.org/W1983294093","https://openalex.org/W2018408116","https://openalex.org/W2789856099","https://openalex.org/W2578333161","https://openalex.org/W2009297402","https://openalex.org/W3211045418","https://openalex.org/W1874341760","https://openalex.org/W2891063262"],"abstract_inverted_index":{"BACKGROUND:":[0],"Resistance":[1],"to":[2,26,40,121,132,136,187,190,203],"chemotherapy":[3],"and":[4,69,81,85,93,126,162,181,198,213],"molecularly":[5],"targeted":[6],"therapies":[7],"is":[8,44,151],"a":[9,74,115,147,192],"major":[10],"factor":[11],"in":[12,29,119,201],"limiting":[13],"the":[14,48,65,70,90,97,107,155,172,175,185],"effectiveness":[15],"of":[16,47,51,57,73,96,138,154,159,164,174,177,195],"cancer":[17,196],"treatment.":[18,38],"In":[19],"many":[20],"cases,":[21],"resistance":[22],"can":[23,61,77],"be":[24],"linked":[25],"genetic":[27],"changes":[28],"target":[30],"proteins,":[31],"either":[32],"pre-existing":[33],"or":[34],"evolutionarily":[35],"selected":[36],"during":[37],"Key":[39],"overcoming":[41],"this":[42],"challenge":[43],"an":[45],"understanding":[46],"molecular":[49,58],"determinants":[50],"drug":[52,86,214],"binding.":[53],"Using":[54],"multi-stage":[55,140],"pipelines":[56],"simulations":[59],"we":[60,105],"gain":[62],"insights":[63],"into":[64],"binding":[66,98,141,178],"free":[67,99],"energy":[68,100],"residence":[71],"time":[72],"ligand,":[75],"which":[76],"inform":[78],"both":[79,123],"stratified":[80],"personal":[82],"treatment":[83],"regimes":[84],"development.":[87],"To":[88],"support":[89,204],"scalable,":[91],"adaptive":[92],"automated":[94],"calculation":[95,143,156],"on":[101,210],"high-performance":[102],"computing":[103],"resources,":[104],"introduce":[106],"High-throughput":[108],"Binding":[109],"Affinity":[110],"Calculator":[111],"(HTBAC).":[112],"HTBAC":[113,170,183],"uses":[114],"building":[116],"block":[117],"approach":[118],"order":[120,202],"attain":[122],"workflow":[124],"flexibility":[125],"performance.":[127],"RESULTS:":[128],"We":[129],"demonstrate":[130],"close":[131],"perfect":[133],"weak":[134],"scaling":[135],"hundreds":[137],"concurrent":[139],"affinity":[142,179],"pipelines.":[144],"This":[145],"permits":[146],"rapid":[148],"time-to-solution":[149],"that":[150],"essentially":[152],"invariant":[153],"protocol,":[157],"size":[158],"candidate":[160,199],"ligands":[161,200],"number":[163],"ensemble":[165],"simulations.":[166],"CONCLUSIONS:":[167],"As":[168],"such,":[169],"advances":[171],"state":[173],"art":[176],"calculations":[180],"protocols.":[182],"provides":[184],"platform":[186],"enable":[188],"scientists":[189],"study":[191],"wide":[193],"range":[194],"drugs":[197],"personalized":[205],"clinical":[206],"decision":[207],"making":[208],"based":[209],"genome":[211],"sequencing":[212],"discovery.":[215]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
