{"id":"https://openalex.org/W2902563183","doi":"https://doi.org/10.1186/s12859-018-2494-6","title":"PanoromiX: a time-course network medicine platform integrating molecular assays and pathophenotypic data","display_name":"PanoromiX: a time-course network medicine platform integrating molecular assays and pathophenotypic data","publication_year":2018,"publication_date":"2018-11-29","ids":{"openalex":"https://openalex.org/W2902563183","doi":"https://doi.org/10.1186/s12859-018-2494-6","mag":"2902563183","pmid":"https://pubmed.ncbi.nlm.nih.gov/30497372"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2494-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2494-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2494-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2494-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028447819","display_name":"Ruoting Yang","orcid":"https://orcid.org/0000-0002-8289-1999"},"institutions":[{"id":"https://openalex.org/I2802821144","display_name":"Center for Environmental Health","ror":"https://ror.org/03k84rm07","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802821144"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"government","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ruoting Yang","raw_affiliation_strings":["Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA. ruoting.yang@nih.gov","Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA. ruoting.yang@nih.gov","Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA","Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA"],"affiliations":[{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA. ruoting.yang@nih.gov","institution_ids":["https://openalex.org/I4210130649"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA. ruoting.yang@nih.gov","institution_ids":["https://openalex.org/I4210088792"]},{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA","institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I2802821144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101484754","display_name":"Daniel J. Watson","orcid":"https://orcid.org/0000-0002-3217-3286"},"institutions":[{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Watson","raw_affiliation_strings":["Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA"],"affiliations":[{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053876373","display_name":"Joshua Williams","orcid":null},"institutions":[{"id":"https://openalex.org/I2802821144","display_name":"Center for Environmental Health","ror":"https://ror.org/03k84rm07","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802821144"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"government","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Williams","raw_affiliation_strings":["Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA","Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA"],"affiliations":[{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210088792"]},{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA","institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I2802821144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054996087","display_name":"Raina Kumar","orcid":"https://orcid.org/0000-0002-7090-0691"},"institutions":[{"id":"https://openalex.org/I2802821144","display_name":"Center for Environmental Health","ror":"https://ror.org/03k84rm07","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802821144"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"government","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raina Kumar","raw_affiliation_strings":["Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA","Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA"],"affiliations":[{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210088792"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA","institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I2802821144"]},{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067990677","display_name":"Ross T. Campbell","orcid":"https://orcid.org/0000-0002-0050-2129"},"institutions":[{"id":"https://openalex.org/I2802821144","display_name":"Center for Environmental Health","ror":"https://ror.org/03k84rm07","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802821144"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"government","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ross Campbell","raw_affiliation_strings":["Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA","Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA"],"affiliations":[{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210088792"]},{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA","institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I2802821144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006764467","display_name":"Uma Mudunuri","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Uma Mudunuri","raw_affiliation_strings":["Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA"],"affiliations":[{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research sponsored by the National Cancer Institute, Frederick, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082731692","display_name":"Rasha Hammamieh","orcid":"https://orcid.org/0000-0001-8643-6232"},"institutions":[{"id":"https://openalex.org/I2802821144","display_name":"Center for Environmental Health","ror":"https://ror.org/03k84rm07","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802821144"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"government","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rasha Hammamieh","raw_affiliation_strings":["Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA"],"affiliations":[{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210088792"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA","institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I2802821144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004751787","display_name":"Marti Jett","orcid":"https://orcid.org/0000-0002-2899-0216"},"institutions":[{"id":"https://openalex.org/I2802821144","display_name":"Center for Environmental Health","ror":"https://ror.org/03k84rm07","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802821144"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"government","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marti Jett","raw_affiliation_strings":["Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA"],"affiliations":[{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA","institution_ids":["https://openalex.org/I4210088792"]},{"raw_affiliation_string":"Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, USA","institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I2802821144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5028447819"],"corresponding_institution_ids":["https://openalex.org/I2802821144","https://openalex.org/I4210088792","https://openalex.org/I4210130649","https://openalex.org/I4210140884"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11489007,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"19","issue":"1","first_page":"458","last_page":"458"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.687641441822052},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5785900354385376},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.546388566493988},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.48443105816841125},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.465397447347641},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.46251335740089417},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4454706311225891},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.4407844841480255},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4324710965156555},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41125959157943726},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23124036192893982},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2025620937347412},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09058773517608643}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.687641441822052},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5785900354385376},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.546388566493988},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.48443105816841125},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.465397447347641},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.46251335740089417},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4454706311225891},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.4407844841480255},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4324710965156555},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41125959157943726},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23124036192893982},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2025620937347412},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09058773517608643},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001681","descriptor_name":"Biological Assay","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001681","descriptor_name":"Biological Assay","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001681","descriptor_name":"Biological Assay","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001681","descriptor_name":"Biological Assay","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001681","descriptor_name":"Biological Assay","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011328","descriptor_name":"Prions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011328","descriptor_name":"Prions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011328","descriptor_name":"Prions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011328","descriptor_name":"Prions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011328","descriptor_name":"Prions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-018-2494-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2494-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2494-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30497372","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30497372","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:bcf7bed062c243fabd5a5f16e9e72911","is_oa":true,"landing_page_url":"https://doaj.org/article/bcf7bed062c243fabd5a5f16e9e72911","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-6 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5245797","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6267067","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2494-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2494-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2494-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3667057077","display_name":null,"funder_award_id":"HSN261200800001E","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4519693722","display_name":null,"funder_award_id":"HHSN261200800001E","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5756171758","display_name":null,"funder_award_id":"HSN261200800001E","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6032214852","display_name":null,"funder_award_id":"HHSN261200800001E","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6211647149","display_name":null,"funder_award_id":"HHSN261200800001","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6402396321","display_name":null,"funder_award_id":"09284002.","funder_id":"https://openalex.org/F4320338280","funder_display_name":"Medical Research and Materiel Command"},{"id":"https://openalex.org/G7019524645","display_name":null,"funder_award_id":"HHSN261200800001","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7643671341","display_name":null,"funder_award_id":"09284002","funder_id":"https://openalex.org/F4320338280","funder_display_name":"Medical Research and Materiel Command"},{"id":"https://openalex.org/G7836354676","display_name":null,"funder_award_id":"HHSN261200800","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8198795195","display_name":null,"funder_award_id":"00001","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320338280","display_name":"Medical Research and Materiel Command","ror":"https://ror.org/03cd02q50"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2902563183.pdf","grobid_xml":"https://content.openalex.org/works/W2902563183.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1538287845","https://openalex.org/W1668625893","https://openalex.org/W1946371345","https://openalex.org/W2125910575","https://openalex.org/W2126434857","https://openalex.org/W2127293863","https://openalex.org/W2141545875","https://openalex.org/W2146997276","https://openalex.org/W2159675211","https://openalex.org/W2165706283","https://openalex.org/W2167566248","https://openalex.org/W2472803348","https://openalex.org/W2607608696","https://openalex.org/W2912062511","https://openalex.org/W4243335066"],"related_works":["https://openalex.org/W2114466827","https://openalex.org/W2135896045","https://openalex.org/W2155261113","https://openalex.org/W2156431842","https://openalex.org/W1584645941","https://openalex.org/W2278276487","https://openalex.org/W4311665222","https://openalex.org/W2092868481","https://openalex.org/W2005775729","https://openalex.org/W2061355760"],"abstract_inverted_index":{"This":[0],"emergent":[1],"tool":[2],"of":[3,13,39,41,47,68,83],"network":[4,33,54,78],"medicine":[5,34],"is":[6],"the":[7,11,45,81],"first":[8],"to":[9,17,58,63],"visualize":[10],"interconnectedness":[12],"tailored":[14],"genome":[15],"assays":[16],"pathological":[18],"networks":[19],"and":[20,72,80,86],"phenotypes":[21],"for":[22],"cells":[23],"or":[24],"organisms":[25],"in":[26],"a":[27],"data-agnostic":[28],"manner.":[29],"As":[30],"an":[31],"advanced":[32],"tool,":[35],"PanoromiX":[36],"allows":[37],"monitoring":[38],"panel":[40],"biomarker":[42],"perturbations":[43],"over":[44],"progression":[46],"diseases,":[48],"disease":[49,74],"classification":[50],"based":[51],"on":[52],"changing":[53],"modules":[55],"that":[56],"corresponds":[57],"specific":[59],"patho-phenotype":[60],"as":[61],"opposed":[62],"clinical":[64],"symptoms,":[65],"systematic":[66],"exploration":[67],"complex":[69],"molecular":[70],"interactions":[71],"distinct":[73],"states":[75],"via":[76],"regulatory":[77],"changes,":[79],"discovery":[82],"novel":[84],"diagnostic":[85],"therapeutic":[87],"targets.":[88]},"counts_by_year":[],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
