{"id":"https://openalex.org/W2911265822","doi":"https://doi.org/10.1186/s12859-018-2483-9","title":"Optimising orbit counting of arbitrary order by equation selection","display_name":"Optimising orbit counting of arbitrary order by equation selection","publication_year":2019,"publication_date":"2019-01-15","ids":{"openalex":"https://openalex.org/W2911265822","doi":"https://doi.org/10.1186/s12859-018-2483-9","mag":"2911265822","pmid":"https://pubmed.ncbi.nlm.nih.gov/30646859"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2483-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2483-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-018-2483-9.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-018-2483-9.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056011679","display_name":"Ine Melckenbeeck","orcid":"https://orcid.org/0000-0003-0733-089X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Ine Melckenbeeck","raw_affiliation_strings":["Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026037977","display_name":"Pieter Audenaert","orcid":"https://orcid.org/0000-0003-3319-4705"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"HOGENT University of Applied Sciences and Arts","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Pieter Audenaert","raw_affiliation_strings":["Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium. pieter.audenaert@ugent.be","Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium. pieter.audenaert@ugent.be","Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium. pieter.audenaert@ugent.be","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I12607205","https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium. pieter.audenaert@ugent.be","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069643815","display_name":"Thomas Van Parys","orcid":null},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Thomas Van Parys","raw_affiliation_strings":["Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium","Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, Ghent, 9052, Belgium","Department of Plant Systems Biology, VIB, Technologiepark 927, Ghent, 9052, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, Ghent, 9052, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Plant Systems Biology, VIB, Technologiepark 927, Ghent, 9052, Belgium","institution_ids":["https://openalex.org/I4210098178"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070738091","display_name":"Yves Van de Peer","orcid":"https://orcid.org/0000-0003-4327-3730"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]}],"countries":["BE","ZA"],"is_corresponding":false,"raw_author_name":"Yves Van De Peer","raw_affiliation_strings":["Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium","Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria 0028, South Africa","Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, Ghent, 9052, Belgium","Department of Plant Systems Biology, VIB, Technologiepark 927, Ghent, 9052, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria 0028, South Africa","institution_ids":["https://openalex.org/I69552723"]},{"raw_affiliation_string":"Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, Ghent, 9052, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Plant Systems Biology, VIB, Technologiepark 927, Ghent, 9052, Belgium","institution_ids":["https://openalex.org/I4210098178"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045659586","display_name":"Didier Colle","orcid":"https://orcid.org/0000-0002-1428-0301"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Didier Colle","raw_affiliation_strings":["Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium","Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067298865","display_name":"Mario Pickavet","orcid":"https://orcid.org/0000-0001-5817-7886"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Mario Pickavet","raw_affiliation_strings":["Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium","Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Ghent University - imec, IDLab, Technologiepark 15, Ghent, 9052, Belgium","institution_ids":["https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5026037977"],"corresponding_institution_ids":["https://openalex.org/I12607205","https://openalex.org/I2801227569","https://openalex.org/I32597200"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3314,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.56953026,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"20","issue":"1","first_page":"27","last_page":"27"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.65420001745224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.65420001745224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.14309999346733093,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.05640000104904175,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.58739173412323},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.536204993724823},{"id":"https://openalex.org/keywords/simultaneous-equations","display_name":"Simultaneous equations","score":0.49583110213279724},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.425087034702301},{"id":"https://openalex.org/keywords/independent-equation","display_name":"Independent equation","score":0.42124468088150024},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.35496240854263306},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34766602516174316},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.3220837712287903},{"id":"https://openalex.org/keywords/differential-equation","display_name":"Differential equation","score":0.20462656021118164},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.165456622838974}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.58739173412323},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.536204993724823},{"id":"https://openalex.org/C170036204","wikidata":"https://www.wikidata.org/wiki/Q735660","display_name":"Simultaneous equations","level":3,"score":0.49583110213279724},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.425087034702301},{"id":"https://openalex.org/C200602138","wikidata":"https://www.wikidata.org/wiki/Q16979193","display_name":"Independent equation","level":3,"score":0.42124468088150024},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.35496240854263306},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34766602516174316},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.3220837712287903},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.20462656021118164},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.165456622838974}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/s12859-018-2483-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2483-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-018-2483-9.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30646859","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30646859","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:archive.ugent.be:8584069","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/8584069","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:eded57b169ca4932ae424a4aee623470","is_oa":false,"landing_page_url":"https://doaj.org/article/eded57b169ca4932ae424a4aee623470","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss 1, Pp 1-13 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5322107","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6334470","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6334470","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6334470","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.up.ac.za:2263/75137","is_oa":true,"landing_page_url":"http://hdl.handle.net/2263/75137","pdf_url":null,"source":{"id":"https://openalex.org/S4306401870","display_name":"UpSpace Institutional Repository (University of Pretoria)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I69552723","host_organization_name":"University of Pretoria","host_organization_lineage":["https://openalex.org/I69552723"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:zenodo.org:2545000","is_oa":true,"landing_page_url":"https://zenodo.org/record/2545000","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics 20(1) 27","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2483-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2483-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-018-2483-9.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322603","display_name":"Universiteit Gent","ror":"https://ror.org/00cv9y106"},{"id":"https://openalex.org/F4320333065","display_name":"Seventh Framework Programme","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2911265822.pdf","grobid_xml":"https://content.openalex.org/works/W2911265822.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1849803292","https://openalex.org/W1950199196","https://openalex.org/W2043764521","https://openalex.org/W2104812688","https://openalex.org/W2112262143","https://openalex.org/W2121821841","https://openalex.org/W2136268441","https://openalex.org/W2148762636","https://openalex.org/W2153624566","https://openalex.org/W2156626376","https://openalex.org/W2157312249","https://openalex.org/W2256826326","https://openalex.org/W2345862122","https://openalex.org/W2387255728","https://openalex.org/W2543598748","https://openalex.org/W2570557198","https://openalex.org/W2749474377","https://openalex.org/W2770482399","https://openalex.org/W2800323586","https://openalex.org/W2913556077","https://openalex.org/W2963060993","https://openalex.org/W4293282039"],"related_works":["https://openalex.org/W2460529040","https://openalex.org/W153415882","https://openalex.org/W2178949136","https://openalex.org/W4252428448","https://openalex.org/W70989911","https://openalex.org/W2044452588","https://openalex.org/W3147097468","https://openalex.org/W960957809","https://openalex.org/W1982123151","https://openalex.org/W1989565115"],"abstract_inverted_index":{"BACKGROUND:":[0],"Graphlets":[1],"are":[2,63,78,88,130,160,177,191],"useful":[3],"for":[4],"bioinformatics":[5],"network":[6],"analysis.":[7],"Based":[8],"on":[9,73,97,134,142,214],"the":[10,35,52,119,135,138,143,174,210,229],"structure":[11],"of":[12,44,75,114,137,189],"Ho\u010devar":[13],"and":[14,56,66,91,185],"Dem\u0161ar's":[15],"ORCA":[16,39],"algorithm,":[17,24,28],"we":[18],"have":[19,94],"created":[20],"an":[21,95],"orbit":[22],"counting":[23],"named":[25],"Jesse.":[26],"This":[27],"like":[29],"ORCA,":[30],"uses":[31],"equations":[32,57,62,77,87,129,150,167,190,212],"to":[33,84,116,123,201,233],"count":[34,42],"orbits,":[36],"but":[37,140],"unlike":[38],"it":[40,50],"can":[41],"graphlets":[43],"any":[45],"order.":[46],"To":[47],"do":[48],"so,":[49],"generates":[51],"required":[53],"internal":[54],"structures":[55],"automatically.":[58],"Many":[59],"more":[60,161,205],"redundant":[61],"generated,":[64],"however,":[65],"Jesse's":[67,105],"running":[68,106],"time":[69,107],"is":[70,225],"highly":[71],"dependent":[72],"which":[74,86,92],"these":[76],"used.":[79],"Therefore,":[80],"this":[81,98],"paper":[82],"aims":[83],"investigate":[85],"most":[89,131,178],"efficient,":[90,162,206],"factors":[93],"effect":[96],"efficiency.":[99],"RESULTS:":[100],"With":[101],"appropriate":[102],"equation":[103],"selection,":[104],"may":[108],"be":[109],"reduced":[110],"by":[111,207,236],"a":[112,181,202,221],"factor":[113,203],"up":[115,200],"2":[117,204],"in":[118,153,173],"best":[120,211],"case,":[121],"compared":[122],"using":[124],"randomly":[125],"selected":[126],"equations.":[127],"Which":[128],"efficient":[132],"depends":[133],"density":[136,182],"graph,":[139],"barely":[141],"graph":[144,148,215],"type.":[145],"At":[146,180],"low":[147],"density,":[149,166],"with":[151,157,168,170],"terms":[152,169],"their":[154],"right-hand":[155,175],"side":[156,176],"few":[158],"arguments":[159,172],"whereas":[163],"at":[164],"high":[165],"many":[171],"efficient.":[179,194],"between":[183],"0.6":[184],"0.7,":[186],"both":[187],"types":[188],"about":[192],"equally":[193],"CONCLUSIONS:":[195],"Our":[196],"Jesse":[197],"algorithm":[198],"became":[199],"automatically":[208],"selecting":[209],"based":[213],"density.":[216],"It":[217],"was":[218],"adapted":[219],"into":[220],"Cytoscape":[222,230],"App":[223,231],"that":[224],"freely":[226],"available":[227],"from":[228],"Store":[232],"ease":[234],"application":[235],"bioinformaticians.":[237]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}
