{"id":"https://openalex.org/W2953157285","doi":"https://doi.org/10.1186/s12859-018-2459-9","title":"GLUE: a flexible software system for virus sequence data","display_name":"GLUE: a flexible software system for virus sequence data","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2953157285","doi":"https://doi.org/10.1186/s12859-018-2459-9","mag":"2953157285","pmid":"https://pubmed.ncbi.nlm.nih.gov/30563445"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2459-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2459-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2459-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2459-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044545582","display_name":"Joshua B. Singer","orcid":"https://orcid.org/0000-0001-6989-475X"},"institutions":[{"id":"https://openalex.org/I4210146449","display_name":"MRC University of Glasgow Centre for Virus Research","ror":"https://ror.org/03vaer060","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210146449","https://openalex.org/I7882870","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Joshua B. Singer","raw_affiliation_strings":["MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK. josh.singer@glasgow.ac.uk","MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK"],"raw_orcid":"https://orcid.org/0000-0001-6989-475X","affiliations":[{"raw_affiliation_string":"MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK. josh.singer@glasgow.ac.uk","institution_ids":["https://openalex.org/I4210146449"]},{"raw_affiliation_string":"MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK","institution_ids":["https://openalex.org/I4210146449"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001065613","display_name":"Emma C. Thomson","orcid":"https://orcid.org/0000-0003-1482-0889"},"institutions":[{"id":"https://openalex.org/I4210146449","display_name":"MRC University of Glasgow Centre for Virus Research","ror":"https://ror.org/03vaer060","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210146449","https://openalex.org/I7882870","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Emma C. Thomson","raw_affiliation_strings":["MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK","institution_ids":["https://openalex.org/I4210146449"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062152339","display_name":"John McLauchlan","orcid":"https://orcid.org/0000-0003-2217-9948"},"institutions":[{"id":"https://openalex.org/I4210146449","display_name":"MRC University of Glasgow Centre for Virus Research","ror":"https://ror.org/03vaer060","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210146449","https://openalex.org/I7882870","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John McLauchlan","raw_affiliation_strings":["MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK","institution_ids":["https://openalex.org/I4210146449"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027557443","display_name":"Joseph Hughes","orcid":"https://orcid.org/0000-0003-2556-2563"},"institutions":[{"id":"https://openalex.org/I4210146449","display_name":"MRC University of Glasgow Centre for Virus Research","ror":"https://ror.org/03vaer060","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210146449","https://openalex.org/I7882870","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Joseph Hughes","raw_affiliation_strings":["MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK","institution_ids":["https://openalex.org/I4210146449"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046127353","display_name":"Robert J. Gifford","orcid":"https://orcid.org/0000-0003-4028-9884"},"institutions":[{"id":"https://openalex.org/I4210146449","display_name":"MRC University of Glasgow Centre for Virus Research","ror":"https://ror.org/03vaer060","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210146449","https://openalex.org/I7882870","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert J. Gifford","raw_affiliation_strings":["MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK. robert.gifford@glasgow.ac.uk","MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK. robert.gifford@glasgow.ac.uk","institution_ids":["https://openalex.org/I4210146449"]},{"raw_affiliation_string":"MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK","institution_ids":["https://openalex.org/I4210146449"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5044545582"],"corresponding_institution_ids":["https://openalex.org/I4210146449"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.0523,"has_fulltext":true,"cited_by_count":104,"citation_normalized_percentile":{"value":0.96505223,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"532","last_page":"532"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.42719998955726624,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.42719998955726624,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.3587999939918518,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.018799999728798866,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.5743415951728821},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5508291721343994},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5123435258865356},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.44464391469955444},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.43612173199653625},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42834338545799255},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.4282878041267395},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.421791136264801},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.418714314699173},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.41252970695495605},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37292975187301636},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36564335227012634},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32711389660835266},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3019084930419922},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2698598802089691},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20268985629081726},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15089735388755798},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1285412609577179}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.5743415951728821},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5508291721343994},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5123435258865356},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.44464391469955444},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.43612173199653625},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42834338545799255},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4282878041267395},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.421791136264801},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.418714314699173},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.41252970695495605},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37292975187301636},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36564335227012634},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32711389660835266},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3019084930419922},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2698598802089691},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20268985629081726},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15089735388755798},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1285412609577179},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-018-2459-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2459-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2459-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30563445","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30563445","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.gla.ac.uk:161316","is_oa":true,"landing_page_url":"http://eprints.gla.ac.uk/view/author/34155.html>,","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Articles"},{"id":"pmh:oai:doaj.org/article:c87dd2c1b11449888038078a3057990b","is_oa":false,"landing_page_url":"https://doaj.org/article/c87dd2c1b11449888038078a3057990b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-18 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5271464","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6299651","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6299651","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6299651","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2459-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2459-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2459-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1969347759","display_name":null,"funder_award_id":"MC PC 16045","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2072209760","display_name":null,"funder_award_id":"MC_PC_16045","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2206474454","display_name":null,"funder_award_id":"MC_UU_12014","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G3046823906","display_name":null,"funder_award_id":"MC UU 12014/12","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G505876214","display_name":null,"funder_award_id":"P50 GM103297","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G534087314","display_name":null,"funder_award_id":"102789/Z/13/Z","funder_id":"https://openalex.org/F4320307874","funder_display_name":"Wellcome"},{"id":"https://openalex.org/G5391251283","display_name":null,"funder_award_id":"102789/Z/13/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G5743883690","display_name":"Accelerating Precision Diagnostics \u2013 Bridging the Gap","funder_award_id":"MC_PC_16045","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6830746230","display_name":null,"funder_award_id":"MC_UU_12014/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6891376111","display_name":null,"funder_award_id":"MC_UU_12014/12","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320307874","display_name":"Wellcome","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320337","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953157285.pdf","grobid_xml":"https://content.openalex.org/works/W2953157285.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1526257973","https://openalex.org/W1668487814","https://openalex.org/W1779656687","https://openalex.org/W1817385113","https://openalex.org/W1826210767","https://openalex.org/W1984982520","https://openalex.org/W2021210077","https://openalex.org/W2047291432","https://openalex.org/W2053707749","https://openalex.org/W2067127476","https://openalex.org/W2074830661","https://openalex.org/W2096347191","https://openalex.org/W2096525273","https://openalex.org/W2103017472","https://openalex.org/W2106927931","https://openalex.org/W2109954801","https://openalex.org/W2112024536","https://openalex.org/W2115888213","https://openalex.org/W2121300182","https://openalex.org/W2123171788","https://openalex.org/W2139383620","https://openalex.org/W2141052558","https://openalex.org/W2142678478","https://openalex.org/W2146808131","https://openalex.org/W2151397621","https://openalex.org/W2154164013","https://openalex.org/W2157702265","https://openalex.org/W2160378127","https://openalex.org/W2162292509","https://openalex.org/W2169790816","https://openalex.org/W2185218296","https://openalex.org/W2318156787","https://openalex.org/W2397427953","https://openalex.org/W2604808360","https://openalex.org/W2605343262","https://openalex.org/W2751787921","https://openalex.org/W2808706827","https://openalex.org/W2952045272","https://openalex.org/W4211243282","https://openalex.org/W4235121031","https://openalex.org/W4235130189","https://openalex.org/W4238718120","https://openalex.org/W4255659575"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W1993070549","https://openalex.org/W4250169950","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W1906885765","https://openalex.org/W4232951075","https://openalex.org/W4386946098","https://openalex.org/W4238968199","https://openalex.org/W2218034408"],"abstract_inverted_index":{"BACKGROUND:":[0],"Virus":[1],"genome":[2,78],"sequences,":[3],"generated":[4],"in":[5,124,148],"ever-higher":[6],"volumes,":[7],"can":[8,173,187],"provide":[9],"new":[10],"scientific":[11],"insights":[12],"and":[13,19,29,80,90,135,146,177,201],"inform":[14],"our":[15],"responses":[16],"to":[17,87,91,190],"epidemics":[18],"outbreaks.":[20],"To":[21],"facilitate":[22],"interpretation,":[23],"such":[24,52,73],"data":[25,57,61,69,141,195],"must":[26],"be":[27,175,188],"organised":[28],"processed":[30],"within":[31,94],"scalable":[32],"computing":[33],"resources":[34,196],"that":[35],"encapsulate":[36],"virology":[37],"expertise.":[38],"GLUE":[39,55,107,171,186],"(Genes":[40],"Linked":[41],"by":[42,179],"Underlying":[43],"Evolution)":[44],"is":[45,103,144,154],"a":[46,104,128,149,164],"data-centric":[47],"bioinformatics":[48],"environment":[49],"for":[50,109],"building":[51],"resources.":[53],"The":[54],"core":[56],"schema":[58],"organises":[59],"sequence":[60,122,137,140,151,194,220],"along":[62],"evolutionary":[63],"lines,":[64],"capturing":[65],"not":[66],"only":[67],"nucleotide":[68],"but":[70],"associated":[71],"items":[72],"as":[74],"alignments,":[75],"genotype":[76],"definitions,":[77],"annotations":[79],"motifs.":[81],"Its":[82],"flexible":[83],"design":[84],"emphasises":[85],"applicability":[86],"different":[88],"viruses":[89],"diverse":[92],"needs":[93],"research,":[95],"clinical":[96,202],"or":[97],"public":[98,118,198],"health":[99],"contexts.":[100],"RESULTS:":[101],"HCV-GLUE":[102],"case":[105],"study":[106],"resource":[108,162],"hepatitis":[110],"C":[111],"virus":[112,193,219],"(HCV).":[113],"It":[114],"includes":[115],"an":[116],"interactive":[117],"web":[119,161],"application":[120],"providing":[121],"analysis":[123],"the":[125,169,215],"form":[126],"of":[127,166,218],"maximum-likelihood-based":[129],"genotyping":[130],"method,":[131],"antiviral":[132],"resistance":[133],"detection":[134],"graphical":[136],"visualisation.":[138],"HCV":[139],"from":[142],"GenBank":[143],"categorised":[145],"stored":[147],"large-scale":[150],"alignment":[152],"which":[153],"accessible":[155],"via":[156],"web-based":[157],"queries.":[158],"Whereas":[159],"this":[160],"provides":[163],"range":[165],"basic":[167],"functionality,":[168],"underlying":[170],"project":[172],"also":[174],"downloaded":[176],"extended":[178],"bioinformaticians":[180],"addressing":[181],"more":[182],"advanced":[183],"questions.":[184],"CONCLUSION:":[185],"used":[189],"rapidly":[191],"develop":[192],"with":[197,207],"health,":[199],"research":[200],"applications.":[203],"This":[204],"streamlined":[205],"approach,":[206],"its":[208],"focus":[209],"on":[210],"reuse,":[211],"will":[212],"help":[213],"realise":[214],"full":[216],"value":[217],"data.":[221]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":26},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
