{"id":"https://openalex.org/W2901743950","doi":"https://doi.org/10.1186/s12859-018-2455-0","title":"Gene characteristics predicting missense, nonsense and frameshift mutations in tumor samples","display_name":"Gene characteristics predicting missense, nonsense and frameshift mutations in tumor samples","publication_year":2018,"publication_date":"2018-11-19","ids":{"openalex":"https://openalex.org/W2901743950","doi":"https://doi.org/10.1186/s12859-018-2455-0","mag":"2901743950","pmid":"https://pubmed.ncbi.nlm.nih.gov/30453881"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2455-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2455-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2455-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2455-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031124240","display_name":"Ivan P. Gorlov","orcid":null},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I1289422878","display_name":"Dartmouth\u2013Hitchcock Medical Center","ror":"https://ror.org/00d1dhh09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I107672454","https://openalex.org/I1289422878","https://openalex.org/I4390039337"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ivan P. Gorlov","raw_affiliation_strings":["The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon. ivan.p.gorlov@dartmouth.edu","The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon"],"raw_orcid":"https://orcid.org/0000-0002-9006-7203","affiliations":[{"raw_affiliation_string":"The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon. ivan.p.gorlov@dartmouth.edu","institution_ids":["https://openalex.org/I1289422878"]},{"raw_affiliation_string":"The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon","institution_ids":["https://openalex.org/I1289422878","https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014454420","display_name":"Claudio W. Pikielny","orcid":"https://orcid.org/0000-0002-2216-0617"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I1289422878","display_name":"Dartmouth\u2013Hitchcock Medical Center","ror":"https://ror.org/00d1dhh09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I107672454","https://openalex.org/I1289422878","https://openalex.org/I4390039337"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Claudio W. Pikielny","raw_affiliation_strings":["The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon","institution_ids":["https://openalex.org/I1289422878","https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080933903","display_name":"H. Robert Frost","orcid":"https://orcid.org/0000-0002-6794-9945"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I1289422878","display_name":"Dartmouth\u2013Hitchcock Medical Center","ror":"https://ror.org/00d1dhh09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I107672454","https://openalex.org/I1289422878","https://openalex.org/I4390039337"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hildreth R. Frost","raw_affiliation_strings":["The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon","institution_ids":["https://openalex.org/I1289422878","https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064750288","display_name":"Stephanie C. Her","orcid":null},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I1289422878","display_name":"Dartmouth\u2013Hitchcock Medical Center","ror":"https://ror.org/00d1dhh09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I107672454","https://openalex.org/I1289422878","https://openalex.org/I4390039337"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephanie C. Her","raw_affiliation_strings":["The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon","institution_ids":["https://openalex.org/I1289422878","https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049815446","display_name":"Michael D. Cole","orcid":"https://orcid.org/0000-0002-3421-5451"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I1289422878","display_name":"Dartmouth\u2013Hitchcock Medical Center","ror":"https://ror.org/00d1dhh09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I107672454","https://openalex.org/I1289422878","https://openalex.org/I4390039337"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael D. Cole","raw_affiliation_strings":["The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon","institution_ids":["https://openalex.org/I1289422878","https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012109520","display_name":"Samuel D. Strohbehn","orcid":null},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I1289422878","display_name":"Dartmouth\u2013Hitchcock Medical Center","ror":"https://ror.org/00d1dhh09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I107672454","https://openalex.org/I1289422878","https://openalex.org/I4390039337"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel D. Strohbehn","raw_affiliation_strings":["The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon","institution_ids":["https://openalex.org/I1289422878","https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005867985","display_name":"David Wallace-Bradley","orcid":null},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Wallace-Bradley","raw_affiliation_strings":["Department of Statistics, Rice University, M.S. 138, 6100 Main Street, Houston, TX, 77005, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, Rice University, M.S. 138, 6100 Main Street, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071222148","display_name":"Marek Kimmel","orcid":"https://orcid.org/0000-0001-8161-890X"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marek Kimmel","raw_affiliation_strings":["Department of Statistics, Rice University, M.S. 138, 6100 Main Street, Houston, TX, 77005, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, Rice University, M.S. 138, 6100 Main Street, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077624751","display_name":"Olga Y. Gorlova","orcid":"https://orcid.org/0000-0001-8241-6322"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I1289422878","display_name":"Dartmouth\u2013Hitchcock Medical Center","ror":"https://ror.org/00d1dhh09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I107672454","https://openalex.org/I1289422878","https://openalex.org/I4390039337"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olga Y. Gorlova","raw_affiliation_strings":["The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon","institution_ids":["https://openalex.org/I1289422878","https://openalex.org/I107672454"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028989565","display_name":"Christopher I. Amos","orcid":"https://orcid.org/0000-0002-8540-7023"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]},{"id":"https://openalex.org/I1289422878","display_name":"Dartmouth\u2013Hitchcock Medical Center","ror":"https://ror.org/00d1dhh09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I107672454","https://openalex.org/I1289422878","https://openalex.org/I4390039337"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher I. Amos","raw_affiliation_strings":["The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Geisel School of Medicine, Department of Biomedical Data Science, Dartmouth College, HB7936, One Medical Center Dr., Dartmouth-Hitchcock Medical Center, Beirut, NH, 03756, Lebanon","institution_ids":["https://openalex.org/I1289422878","https://openalex.org/I107672454"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5031124240"],"corresponding_institution_ids":["https://openalex.org/I107672454","https://openalex.org/I1289422878"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5601,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.61903857,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"19","issue":"1","first_page":"430","last_page":"430"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8271999955177307,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8271999955177307,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.019200000911951065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14065","display_name":"Biological Research and Disease Studies","score":0.017899999395012856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/frameshift-mutation","display_name":"Frameshift mutation","score":0.8938950300216675},{"id":"https://openalex.org/keywords/missense-mutation","display_name":"Missense mutation","score":0.8456534147262573},{"id":"https://openalex.org/keywords/nonsense","display_name":"Nonsense","score":0.791871964931488},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.690237820148468},{"id":"https://openalex.org/keywords/nonsense-mutation","display_name":"Nonsense mutation","score":0.6754531860351562},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5544459819793701},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5527215003967285},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5500574707984924},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42133790254592896},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.3955867290496826},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.14382192492485046}],"concepts":[{"id":"https://openalex.org/C29906990","wikidata":"https://www.wikidata.org/wiki/Q1440688","display_name":"Frameshift mutation","level":4,"score":0.8938950300216675},{"id":"https://openalex.org/C75563809","wikidata":"https://www.wikidata.org/wiki/Q2656896","display_name":"Missense mutation","level":4,"score":0.8456534147262573},{"id":"https://openalex.org/C62923972","wikidata":"https://www.wikidata.org/wiki/Q600499","display_name":"Nonsense","level":3,"score":0.791871964931488},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.690237820148468},{"id":"https://openalex.org/C96777560","wikidata":"https://www.wikidata.org/wiki/Q518638","display_name":"Nonsense mutation","level":5,"score":0.6754531860351562},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5544459819793701},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5527215003967285},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5500574707984924},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42133790254592896},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.3955867290496826},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.14382192492485046}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018389","descriptor_name":"Codon, Nonsense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018389","descriptor_name":"Codon, Nonsense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018389","descriptor_name":"Codon, Nonsense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059645","descriptor_name":"Mutation Rate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059645","descriptor_name":"Mutation Rate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059645","descriptor_name":"Mutation Rate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-018-2455-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2455-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2455-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30453881","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30453881","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c7fe5ced7f304ca98c74b3534ff89c04","is_oa":true,"landing_page_url":"https://doaj.org/article/c7fe5ced7f304ca98c74b3534ff89c04","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-14 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5218811","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6245819","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:scholarship.rice.edu:1911/103422","is_oa":true,"landing_page_url":"http://hdl.handle.net/1911/103422","pdf_url":null,"source":{"id":"https://openalex.org/S4306401268","display_name":"Rice Digital Scholarship Archive (Rice University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I74775410","host_organization_name":"Rice University","host_organization_lineage":["https://openalex.org/I74775410"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2455-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2455-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2455-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5899999737739563,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G155061019","display_name":null,"funder_award_id":"R01 CA080320","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2216334699","display_name":null,"funder_award_id":"CA206980-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2417926332","display_name":null,"funder_award_id":"P01 CA206980","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2512426779","display_name":null,"funder_award_id":"U19 CA148127","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2777814215","display_name":null,"funder_award_id":"P01 CA206980","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3021165017","display_name":null,"funder_award_id":"K01LM012426","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3053212588","display_name":null,"funder_award_id":"U19 CA148127 to C.I.A","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3332342740","display_name":null,"funder_award_id":"CA149462","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4019629856","display_name":null,"funder_award_id":"P01 CA206980-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4359886251","display_name":null,"funder_award_id":"R01 CA149462","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4380431008","display_name":null,"funder_award_id":"1R56LM12371-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4963535298","display_name":null,"funder_award_id":"K01 LM012426","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5742944843","display_name":null,"funder_award_id":"U19 CA148127","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6173764000","display_name":null,"funder_award_id":"CA148127","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6217102073","display_name":"Collaborative Research: Modeling Stochastic Spatial Effects in Epithelial Mesenchymal Transformation, Signaling, and Cell Migration and Invasion","funder_award_id":"1361411","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7139542057","display_name":null,"funder_award_id":"R56 LM012371","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7201615433","display_name":null,"funder_award_id":"DMS-1361411","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G875225873","display_name":null,"funder_award_id":"R01 CA055248","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310400","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2901743950.pdf","grobid_xml":"https://content.openalex.org/works/W2901743950.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1955219914","https://openalex.org/W1964963969","https://openalex.org/W2000391750","https://openalex.org/W2009720434","https://openalex.org/W2011941471","https://openalex.org/W2029115887","https://openalex.org/W2043398720","https://openalex.org/W2045749216","https://openalex.org/W2055320236","https://openalex.org/W2059145105","https://openalex.org/W2070550360","https://openalex.org/W2078146553","https://openalex.org/W2089902748","https://openalex.org/W2097113581","https://openalex.org/W2101735289","https://openalex.org/W2104549677","https://openalex.org/W2121948489","https://openalex.org/W2128995100","https://openalex.org/W2134471382","https://openalex.org/W2134488721","https://openalex.org/W2136917184","https://openalex.org/W2152061559","https://openalex.org/W2194405749","https://openalex.org/W2277313359","https://openalex.org/W2280346092","https://openalex.org/W2289603825","https://openalex.org/W2472351724","https://openalex.org/W2557187647","https://openalex.org/W2559510638","https://openalex.org/W2563402210","https://openalex.org/W2611387862","https://openalex.org/W2619962003","https://openalex.org/W2751686252","https://openalex.org/W3023863403","https://openalex.org/W6606015674"],"related_works":["https://openalex.org/W4206615058","https://openalex.org/W3011076703","https://openalex.org/W2501856692","https://openalex.org/W2100847686","https://openalex.org/W4250065318","https://openalex.org/W1519534478","https://openalex.org/W4280552696","https://openalex.org/W2001105869","https://openalex.org/W3112847293","https://openalex.org/W2092849118"],"abstract_inverted_index":{"BACKGROUND:":[0],"Because":[1,146],"driver":[2,210,217],"mutations":[3,68,81,143,151,192,231,258],"provide":[4],"selective":[5],"advantage":[6],"to":[7,13,23,34,58,138],"the":[8,64,70,88,103,109,127,140,169,172,186,225,254,280],"mutant":[9],"clone,":[10],"they":[11,160],"tend":[12],"occur":[14],"at":[15],"a":[16,196,233,273],"higher":[17,197],"frequency":[18,30,65],"in":[19,69,72,93,108,171,232],"tumor":[20,73],"samples":[21],"compared":[22],"selectively":[24],"neutral":[25],"(passenger)":[26],"mutations.":[27,131,183],"However,":[28],"mutation":[29],"alone":[31],"is":[32,40],"insufficient":[33],"identify":[35,59],"cancer":[36,246,268,283],"genes":[37,194,218,240],"because":[38],"mutability":[39],"influenced":[41],"by":[42,83,262],"many":[43],"gene":[44,60,71,118,158,260,284],"characteristics,":[45,159],"such":[46],"as":[47,124,241,243,272],"size,":[48,97],"nucleotide":[49,98],"composition,":[50,99],"etc.":[51],"The":[52],"goal":[53],"of":[54,66,90,102,113,126,129,142,157,168,174,177,181,185,191,201,206,214,230,256,279],"this":[55],"study":[56],"was":[57,219],"characteristics":[61,119,165],"associated":[62,153,247],"with":[63,154,195],"somatic":[67,80,130],"samples.":[74],"RESULTS:":[75],"We":[76,132,249],"used":[77,123],"data":[78],"on":[79],"detected":[82],"genome":[84],"wide":[85,264],"screens":[86,265],"from":[87],"Catalog":[89],"Somatic":[91],"Mutations":[92],"Cancer":[94],"(COSMIC).":[95],"Gene":[96,164],"expression":[100],"level":[101,112],"gene,":[104,234],"relative":[105],"replication":[106],"time":[107],"cell":[110],"cycle,":[111],"evolutionary":[114],"conservation":[115],"and":[116,149,179,188,227],"other":[117],"(totaling":[120],"11)":[121],"were":[122,161],"predictors":[125],"number":[128,141,173,200,213,229,255],"applied":[133],"stepwise":[134],"multiple":[135],"linear":[136],"regression":[137],"predict":[139],"per":[144,259],"gene.":[145],"missense,":[147,175],"nonsense,":[148,178],"frameshift":[150,182],"are":[152,208],"different":[155],"sets":[156],"modeled":[162],"separately.":[163],"explain":[166],"88%":[167],"variation":[170],"40%":[176],"23%":[180],"Comparisons":[184],"observed":[187,226],"expected":[189,199],"numbers":[190],"identified":[193,237],"than":[198],"mutations-":[202],"positive":[203],"outliers.":[204],"Many":[205],"these":[207],"known":[209,238],"genes.":[211,248],"A":[212],"novel":[215,245],"candidate":[216],"also":[220,250],"identified.":[221],"CONCLUSIONS:":[222],"By":[223],"comparing":[224],"predicted":[228],"we":[235],"have":[236],"cancer-associated":[239],"well":[242],"111":[244],"showed":[251],"that":[252],"adding":[253],"silent":[257],"reported":[261],"genome/exome":[263],"across":[266],"all":[267],"type":[269],"(COSMIC":[270],"data)":[271],"predictor":[274],"substantially":[275],"exceeds":[276],"predicting":[277,285],"accuracy":[278],"most":[281],"popular":[282],"tool":[286],"-":[287],"MutsigCV.":[288]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
